BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17010.1 Length=1074 Score E Sequences producing significant alignments: (Bits) Value Ahg318465 jgi|Araly1|318465|fgenesh1_pm.C_scaffold_3001481 1214 0.0 Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886 257 1e-67 > Ahg318465 jgi|Araly1|318465|fgenesh1_pm.C_scaffold_3001481 Length=909 Score = 1214 bits (657), Expect = 0.0 Identities = 837/921 (91%), Gaps = 24/921 (3%) Strand=Plus/Plus Query 1 ATGGGTAAGAGTAGTAACATAGTTTTTGATCGGATTAAAGAAGAACGGCAGATGTTGAGC 60 ||||||| ||| || ||||| | ||||||| |||| |||||||||| ||||||||||| Sbjct 1 ATGGGTAGGAGAAGGAACATTGGTTTTGATAAAATTATAGAAGAACGGAAGATGTTGAGC 60 Query 61 TTTTTCAAGATTTTTCAGAGGGCAGATCTATCCTCTGACTGCATGAGAGCGCTTCCTTAC 120 |||||||||||||||||||| |||||||||| ||||| |||||||||||| || ||||| Sbjct 61 TTTTTCAAGATTTTTCAGAGTTCAGATCTATCTTCTGAATGCATGAGAGCGTTTTCTTAC 120 Query 121 AGCTTCATAAGCAAAGTCTCTGA-GAAAGACTTCTCTTACAAGATGGTTATAAGAGCGCA 179 ||||||||||| | | |||| | |||||||||||||||||||||||| ||||||||||| Sbjct 121 AGCTTCATAAGTAGACTCTC-AAGGAAAGACTTCTCTTACAAGATGGTGATAAGAGCGCA 179 Query 180 ATGGGGAAAGACATGGGATGTAGAAGTCTCCAAGAACCCGACATACTACTACATTGAGAC 239 |||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||||| Sbjct 180 ATGGGGAAAGACATGGCATCTAGAAATCTCCAAGAACCCGAGATACTACTACATTGAGAG 239 Query 240 GCGTGGATGGGATCTGTTTGTGAGTGACAATGCTTTAGGACAAAACGAGTTCATTACCTT 299 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 240 GCGTGGATGGGATCAGTTTGTGAGTGACAATGCTTTAGGAGAAAACGAGTTCATTACCTT 299 Query 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGGCT-TAGAGA 358 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 300 CACTCACAGAGGAAATATGGTCTTTCATGTCAACATCTACGAGCAGAATGG-TGTAGAGA 358 Query 359 TGCGTAA-ACCTCGAAAATTCCAGACGATGGGTCCTTCTAGTGGGATCAAGAAAGAAGAA 417 ||| | | |||||||||||||||||| |||| | |||||||||||||||||||||||| | Sbjct 359 TGC-TCACACCTCGAAAATTCCAGACAATGGATTCTTCTAGTGGGATCAAGAAAGAAGGA 417 Query 418 GGAGAGAACAGCCTCATAGATGTGAAGAAGGAAGAGGAAAGTGATGAATCTC-CGGGACG 476 | |||| | || ||| ||||||||||||||||||||||| ||||||||| | ||||||| Sbjct 418 G-AGAGTA--GCTTCAAAGATGTGAAGAAGGAAGAGGAAACTGATGAATC-CGCGGGACG 473 Query 477 AGCTGAGTTCCTAGTTAGAAAGAAGAAGACTGAGGATTCCAAATCATcaaagaagaagat 536 |||||||||| |||||||||||| |||||||||||| ||||||||||| ||||||||||| Sbjct 474 AGCTGAGTTCGTAGTTAGAAAGAGGAAGACTGAGGAATCCAAATCATCCAAGAAGAAGAT 533 Query 537 g-acgagaaacaaagtgaagaag-aagagcaagagcaagagcaa-gcaagTGCTGGATGG 593 | | |||||| ||| ||||| | ||||||||||| |||||||| | |||||||| |||| Sbjct 534 GGA-GAGAAAGAAAAAGAAGA-GCAAGAGCAAGAGTAAGAGCAAAG-AAGTGCTGAATGG 590 Query 594 TGTTCCAGAGTTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATACCAAA 653 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 591 TGTTCCAGAATTCAAAATCACCATAAGGAAATCATACCTCAAGTTCCTGGCAATCCCAAA 650 Query 654 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGATTTTCACGATTCGTCACCCGAA 713 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 651 ACATTTTGTGGATGATCATATCCCGAATAAGTCTAAGTTTTTCACGGTTCGTCACCCGAA 710 Query 714 TGG--T-GGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGG 770 ||| | ||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 711 TGGGATTGGTTCATGGAAGGTGCTCTGCTTGGTGAGGGAGATTAGGACAATCTTCTCAGG 770 Query 771 TGGATACTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTA 829 ||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| | Sbjct 771 TGGATACTCAAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCA 829 Query 830 AGCTTATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGA-GAAGATG 888 |||| |||||||||||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 830 AGCTCATCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGACCAGAGATGA-GATT 888 Query 889 GATCAGTGCATGATCGATTGA 909 ||||| | ||||||||||||| Sbjct 889 GATCACTACATGATCGATTGA 909 > Ahg897920 jgi|Araly1|897920|Al_scaffold_0005_1886 Length=330 Score = 257 bits (139), Expect = 1e-67 Identities = 176/194 (91%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 717 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGATTCGGACAATCTTCTCAGGTGGATA 776 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 138 TGGTTCATGGAAGGTGCTTTGCTTGGTGAGGGAGAATCAGACAACCTTCTCAGGTGGATA 197 Query 777 CTCGAAATTGGCAAGAGAGT-TCCCTTTGATGGTTGGTGACAAATGCACCTTTAAGCTTA 835 || |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| | Sbjct 198 TTCTAAATTGGCAAGAGAGTATCC-TTTAATGGTTGGTGACAAATGCACCTTCAAGCTCA 256 Query 836 TCAAACCCTTCGAGTTTGTCCTTCTTACCTCCAAGAAGAACAGAGAGAAGATGGATCAGT 895 |||||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||| | Sbjct 257 TCAAACCCTTAGAGTTCGTCCTTCTTACCTCCAAGAAGACCAGAGAGGACATCGATCACT 316 Query 896 GCATGATCGATTGA 909 ||||||||||||| Sbjct 317 ACATGATCGATTGA 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39990939933 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5