BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17020.1 Length=778 Score E Sequences producing significant alignments: (Bits) Value Ahg929544 jgi|Araly1|929544|scaffold_302001.1 821 0.0 > Ahg929544 jgi|Araly1|929544|scaffold_302001.1 Length=537 Score = 821 bits (444), Expect = 0.0 Identities = 496/522 (95%), Gaps = 0/522 (0%) Strand=Plus/Plus Query 85 AGAGAGAGTTATGGCGGAGAGTGGTGGACGAAGGATCGGAGTGGCGGTGGATTTCTCGGA 144 |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 16 AGAGTGAGTTATGGCGGAGAGTGGTGGACGGAGAATCGGAGTGGCGGTGGATTTCTCGGA 75 Query 145 CTGCAGTAAGAAGGCTCTGAGCTGGGCGATCGATAACGTGGTTCGCGACGGAGATCATCT 204 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 GTGTAGCAAGAAGGCTCTGAGCTGGGCGATCGATAACGTGGTTCGCGACGGAGATCATCT 135 Query 205 GATCCTAATCACTATTGCTCACGATATGAATTACGAGGAAGGCGAGATGCAGCTCTGGGA 264 ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 136 AATCCTAATCACCATCGCTCACGATATGAATTACGAGGAAGGAGAGATGCAGCTATGGGA 195 Query 265 GACCGTTGGATCACCTTTTATTCCTATGAGTGAATTCTCTGACGCTGCTGTGATGAAAAA 324 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || Sbjct 196 GACCGTTGGATCACCTTTTATTCCTCTGAGTGAATTCTCTGATGCTGCTGTGATGAAGAA 255 Query 325 GTATGCATTGAAGCCAGATGCTGAAACCCTTGACATTGTCAATACTGCCGCTAGGAAGAA 384 ||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 256 GTATGCAGTGAAGCCAGATGCTGAAACTCTTGACATTGTCAACACTGCCGCTAGGAAGAA 315 Query 385 AACGATTACAGTAGTGATGAAGATATATTGGGGAGATCCTCGTGAGAAGATTTGTGCAGC 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 AACGGTTACAGTAGTGATGAAGATATATTGGGGAGATCCTCGTGAGAAGATTTGTGCAGC 375 Query 445 AGCTGAACAGATTCCTCTCTCAAGCCTTGTGATGGGTAACAGAGGCCTTGGTGGTCTTAA 504 |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| Sbjct 376 AGCTGAACAGATTCCTCTTTCAAGCCTTGTGATGGGTAACCGAGGCCTCGGTGGTCTTAA 435 Query 505 GAGGATGATTATGGGAAGTGTAAGCAACCATGTTGTCAACAACGTTGCATGCCCTGTGAC 564 ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| Sbjct 436 GAGGATGATTATGGGAAGTGTAAGCAACCATGTGGTGAACAACGTTGTATGCCCTGTGAC 495 Query 565 CGTTGTCAAGGCTCACATCTGAGTTTGCTCGGAGAACTCTAA 606 ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 496 CGTTGTCAAGGCTCACACCTGAGTTTGCTCGGGGAACTCTAA 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28706556501 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5