BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17040.1 Length=2144 Score E Sequences producing significant alignments: (Bits) Value Ahg479172 jgi|Araly1|479172|fgenesh2_kg.3__1873__AT3G17040.1 3232 0.0 > Ahg479172 jgi|Araly1|479172|fgenesh2_kg.3__1873__AT3G17040.1 Length=2050 Score = 3232 bits (1750), Expect = 0.0 Identities = 1954/2053 (95%), Gaps = 11/2053 (1%) Strand=Plus/Plus Query 32 AAAGCTCACAAACGGTTTTATCAGTTAAAGCTTTTTTAAACAATGCACTTCTTCTTCGTG 91 |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| Sbjct 1 AAAGCTCACAAACGGTTTTATCAGTTAACGCTTTTCTGAACAATGCACTTCTTCTTCGTG 60 Query 92 CCGAATTCTTCGTCTTCATCTCCTTCTCCGGCCAATACTTCTTCATTCTCGCTATCGTTT 151 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 61 CCGACTTCTTCGTCTTCATCTCCTTCTCCGGCCAATACTTCTTCATTCTCTCTATTGTTT 120 Query 152 CTCACT-C--CTCAAATTCCTGAGAATCTCTGTAAGTCACCGACGAAAATCCACATCGGA 208 ||| || | ||||||||||||||||||||||||| |||||| |||| ||||| |||||| Sbjct 121 CTCGCTCCTTCTCAAATTCCTGAGAATCTCTGTAAATCACCGGCGAAGATCCATATCGGA 180 Query 209 ACTCATGGAATCTCCGGTCAATCGTTTCTCAGTCATCCTACTTTCTCATCTAAGAACACG 268 |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct 181 ACTCATGGAATCTCCGGTAAATCGTTTCTCACACATCCTACGTTCTCATCTAAGAACACG 240 Query 269 TATCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGCCGCAAAAGGAATCT 328 | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 241 TCTCTGTATGCAGTCGTCGACAGGTCTTCTTCAGGTGTATTTTCGTCGCAAAATGAATCT 300 Query 329 GCCAATGGCGAGGGAGAGGAATCTAACACGGAGGAGGGAGTATTAGTAGTTCGACGGCCG 388 ||||||||||| |||| |||||||||||| | |||||| |||||||||||||||||||| Sbjct 301 GCCAATGGCGAAGGAGGGGAATCTAACAC--A-GAGGGATTATTAGTAGTTCGACGGCCG 357 Query 389 TTGTTGGAGAATTCCGATAAGGAATCTAGTGAGGAAGAGGGAAAAAAGTATCCAGCGAGG 448 | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 358 TCGTTGGAGAATTCTGATAAGGAATCTAGTGAGGAAGAGGCAAAAAAGTATCCAGCGAGG 417 Query 449 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ATCGATGCTGGTCTGAGTAATATAGCTAAGAAGATGCCGATATTTGAGCCGGAGAGATCG 477 Query 509 GAATCGTCGTCGTC-ATCTTCAGCCGCTGCTGCTGCAAGAGCTCAAGAGAGACCGCTTGC 567 || ||||| ||||| | | || ||||| ||||||||||| ||||||||||| |||||||| Sbjct 478 GAGTCGTCATCGTCGA-CGTCCGCCGCCGCTGCTGCAAGGGCTCAAGAGAGGCCGCTTGC 536 Query 568 GGTGAATTTGGACTTGTCTCTGTACAAAGCAAAGGTTTTGGCGAGAAATTTCAGATACAA 627 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 537 CGTGAATTTGGACTTATCTCTGTACAAAGCAAAGGTTTTGGCGAGGAATTTCAGATACAA 596 Query 628 AGACGCCGAGAAGATTCTAGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 687 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 597 AGACGCCGAGAAGATTCTGGAGAAGTGCATAGCTTACTGGCCGGAGGATGGGAGACCGTA 656 Query 688 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCTGAAGCTCGAATCCTGTA 747 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 657 CGTGGCATTGGGGAAGATACTAAGCAAACAATCCAAGTTAGCCGAAGCTCGAATCGTGTA 716 Query 748 TGAAAAAGGGTGTCAATCTACACAAGGAGAGAATTCATACATTTGGCAGTGTTGGGCTGT 807 ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 717 TGAGAATGGGTGTCAATCTACACAAGGAGAGAATGCATACATTTGGCAGTGTTGGGCTGT 776 Query 808 CCTGGAAAACAGGTTGGGAAATGTAAGAAGAGCCAGGGAGTTGTTTGATGCAGCCACGGT 867 |||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 777 CCTGGAAAACAGATTGGGAAATGTAAGAAGAGCCAGAGAATTGTTTGATGCAGCTACGGT 836 Query 868 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACCTGGAGATAAAACAAGG 927 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 837 GGCTGACAAGAAGCATGTAGCAGCCTGGCATGGATGGGCAAACTTGGAGATAAAACAAGG 896 Query 928 AAATATAAGTAAAGCAAGGAATCTTCTAGCCAAAGGCCTCAAGTTTTGTGGCAGAAACGA 987 ||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||| Sbjct 897 AAATATAAGTAAAGCGAGGAATCTGCTAGCCAAAGGCCTCAAGTTTTGTGGCCGTAACGA 956 Query 988 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGGCCGGTATGAACAGGCAAG 1047 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 957 GTATATCTACCAAACACTTGCCTTGTTGGAGGCCAAAGCTGCCCGGTATGAACAGGCAAG 1016 Query 1048 GTACCTGTTCAAGCAGGCGACTATATGCAATTC-AAGGAGTTGTGCCAGTTGGTTGGCAT 1106 |||||||||||||||||| || ||||||||||| || ||| || |||||||||||||||| Sbjct 1017 GTACCTGTTCAAGCAGGCCACCATATGCAATTCGAA-GAGCTGCGCCAGTTGGTTGGCAT 1075 Query 1107 GGGCACAGTTGGAAATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1166 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 GGGCACAGTTGGAGATACAGCAGGAAAGATACCCAGCTGCTAGAAAGCTTTTTGAGAAAG 1135 Query 1167 CTGTCCAGGCAAGCCCCAAGAATAGATTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1226 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1136 CTGTCCAGGCAAGCCCCAAGAATAGGTTTGCGTGGCACGTATGGGGGGTGTTTGAAGCTG 1195 Query 1227 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCCTGAAGATAGGTCATGCGCTAAATCCTA 1286 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1196 GAGTAGGTAATGTTGAGCGTGGAAGAAAGCTCTTGAAGATAGGTCATGCGCTAAATCCTA 1255 Query 1287 GAGACCCTGTTCTCCTTCAGTCCCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1346 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1256 GAGACCCTGTTCTCCTTCAGTCTCTTGGCTTACTGGAGTACAAACATTCATCTGCTAATC 1315 Query 1347 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGCTCGATCCTAGACATCAACCTGTTTGGA 1406 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1316 TTGCCCGGGCTTTACTAAGGAGAGCATCAGAGGTCGATCCTAGACATCAACCTGTTTGGA 1375 Query 1407 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACACAACAACAGCTAGAGAACTTTACC 1435 Query 1467 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTTCTCGCTGTCTACAGGCGTGGG 1526 |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| Sbjct 1436 AAAGAGCTCTCTCCATTGATGCAAATACCGAAAGTGCTGCTCGTTGTCTACAGGCATGGG 1495 Query 1527 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTCAGATCTTCAT 1586 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1496 GAGTTCTCGAGCAGAGAGCAGGAAACTTATCAGCAGCAAGAAGATTATTTAGATCTTCAT 1555 Query 1587 TGAACATTAACTCACAAAGCTACGTTACATGGATGACATGGGCACAACTTGAGGAAGATC 1646 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1556 TGAACATTAACTCACAAAGCTACGTTACGTGGATGACATGGGCACAACTTGAGGAAGATC 1615 Query 1647 AAGGAGACACCGAACGTGCTGAAGAAATCCGTAACCTCTATTTTCAACAACGCACAGAGG 1706 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1616 AAGGAGACTCCGAACGTGCTGAAGAAATCCGTAACCTCTATTTCCAACAACGCACAGAGG 1675 Query 1707 TTGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATTATTGACCCGGCTTTAGACA 1766 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1676 TCGTTGATGATGCTTCGTGGGTCACAGGATTCTTGGATATCATTGACCCGGCTTTAGACA 1735 Query 1767 CCGTTAAAAGGCTCTTGAACTTTGGTCAGAACAATGACAACAACAGATTAACTACTACTC 1826 ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1736 CCGTTAAAAGGCTTTTGAACTTTGGTCAAAACAATGACAACAACAGGTTAACTACTACTC 1795 Query 1827 TTAGAAACATGAATAGAACCAAAGATAGCCAATCCAATCAGCAACCCGAGAGCTCTGCGG 1886 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | || Sbjct 1796 TTAGAAACATGAATGGAACCAAAGATAGCCAAACCAATCAGCAACCCGAGAGCTCAGTGG 1855 Query 1887 GACGCGAGGACATTGAAACTGGGAGCGGGTTTAACCTCGATGTATTTTTACGCTCGAAGC 1946 |||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 1856 GACGCGAGGACACTGAAACTGGGAGCGGATTTAACCTCGATGCGTTTTTACGCGAGAAGC 1915 Query 1947 TGTCGTTGGATCCTTTGAAGCTGGACGTTAATCTTGATTCTAAGAGGTTAGAGAGATTCA 2006 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1916 TGTCGTTGGATCCTTTGAAGCTGGACGTTAACCTTGATTCTAAGAAGTTAGAGAGATTCA 1975 Query 2007 CTAGAGGAAGAATAAATGGTGCTTGAAAAAATAAGAGGG-ATATTTATTGAGGCGGTGTA 2065 ||||||| ||||||||||||||||||||||| | ||||| |||||||||||||| ||||| Sbjct 1976 CTAGAGGGAGAATAAATGGTGCTTGAAAAAACATGAGGGGATATTTATTGAGGCAGTGTA 2035 Query 2066 AAGATGAAGGGTC 2078 ||||| ||||||| Sbjct 2036 AAGATAAAGGGTC 2048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80675138910 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5