BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17130.1
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929555 jgi|Araly1|929555|scaffold_302012.1 850 0.0
> Ahg929555 jgi|Araly1|929555|scaffold_302012.1
Length=598
Score = 850 bits (460), Expect = 0.0
Identities = 523/553 (95%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAGATCATCCACCGTCACATCATTACCGTGTCTCTCCCTCTTTCTCCTTC-TGCT 59
||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| || ||||
Sbjct 30 ATGAAGAGATCCTCCACAGTCACATCATTACCGTGTCTCTCCCTATTTCTCC-TCTTGCT 88
Query 60 TCTGCCGTCGGTAGTCCAATCCTCCGACGACCTTATCGACAAAATATGCCAAGCAACGCC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ACTGCCGTCGGTAGTCCAATCCTCCGACGACCTTATCGACAAAATATGCCAAGCAACGCC 148
Query 120 ATTCTGCGACCTATGTGAAGCCTCTCTTCGTCCATTCTCTCCGTCACCTTCTGATCCCAA 179
||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||| ||
Sbjct 149 GTTCTGCGACCTCTGTGAAGCCTCTCTCCGTCCACTCTCTCCCTCACCTTCTGATCCAAA 208
Query 180 ATCCTTAGGTGCCGCTATGGCCAGCGTCGTGCTCGGAAACATGACCGATACTTTAGGATA 239
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 209 ATCCTTAGCCGCCGCTATGGCCAGTGTCGTCCTCGGAAACATGACCGATACTTTAGGATA 268
Query 240 CATCCAATCGCTGATCAAACATGCTCACGATCCTGCGGCAGAGCGCGCGCTGGCTCAGTG 299
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 269 CATTCAATCGCTGATCAAACATTCTCACGATCCTGCGGCAGAGCGCGCGCTGGCTCAGTG 328
Query 300 CGCTGAGCTGTACCGGCCGGTGGTCAAGTTTAATATTCCTCAGGCGATGGAGGCAATGCA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CGCCGAGCTGTACCGGCCGGTGGTCAAGTTTAATATTCCTCAGGCGATGGAGGCAATGCA 388
Query 360 GGGCGGCAAATTCGGCTTTGCGATATATGTGCTCGGAGACGCCGAGAAGCAGACTGATTC 419
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 389 GGGCGGCAAATTTGGATTTGCGATATATGTACTCGGAGACGCCGAGAAGCAGACTGATTC 448
Query 420 TTGTCAGAAAGGAATCACGAACGCCGGCGCCGACGATGAAAGCTCGGTGGCTGTTACGGC 479
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 449 TTGTCAGAAAGGGATCACGAACACCGGCGCCGACGATGAAAGCTCGGTGGCTGTTACGGC 508
Query 480 TAGAAACAAGCTAGTTAAAAATCTTTGTGACGTGGCGATTTCTGTGCTTAAGTCTCTGAT 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 509 TAGAAACAAGCTAGTTAAGAATCTTTGTGACGTGGCGATTTCTGTGCTTAAGTCTCTTAT 568
Query 540 GAATGGTCTTTAA 552
|| | |||||||
Sbjct 569 GA--G-TCTTTAA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20146150992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5