BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17510.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1 2523 0.0
Ahg923153 jgi|Araly1|923153|scaffold_104434.1 913 0.0
> Ahg479227 jgi|Araly1|479227|fgenesh2_kg.3__1928__AT3G17510.1
Length=1795
Score = 2523 bits (1366), Expect = 0.0
Identities = 1647/1770 (93%), Gaps = 70/1770 (4%)
Strand=Plus/Plus
Query 4 AGAGGAAACAAAGAGAAGTAGCGTCCTCTCTTCAATTTCAACCGGCA-------ct-ttc 55
||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 AGAGGAAGCAAAGAGAAGTAGCGTCCTCTCTTCAATTTCAACCGGCACTTTCTTCTCTTC 60
Query 56 ttc-tcttcttcttcttcttcCCAATCTTCCTCGTCTCTTTACCTACACCtatatatata 114
||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 61 TTCTTCTTCTTCTTCTTCTTCCCAATCTTCTTCGTCTCTTTACCTACACC------TATA 114
Query 115 tatatatatatatCTCCTTCCCTCACACACATACCTGCACAGCTACAATAATCTACTTCC 174
|||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 115 TATATA-ATATCTCTCCTTCCCTCACACACAAACCTGCACAGCTGCAATAATCTACTT-C 172
Query 175 CCTCTTTCAATAACGGAATTAATAGTAATCTAATCGGAAGATTCAAGCGAGAAATCGATT 234
|| |||| | || | | || | |||||||||||||||||||||||||||||
Sbjct 173 CC-CTTT---T-------TT-A-A-CAA-CGAATCGGAAGATTCAAGCGAGAAATCGATT 217
Query 235 TGGTTGTCTGTTAATTTGTTGGGAAATAAATTGAAATAGGAGATTGATTGGATGGTGAGA 294
|||||||||| |||| | | | || | | ||||||||||||| |
Sbjct 218 TGGTTGTCTGA-AATT-G--G-----T-----GA--T------T-GATTGGATGGTGAAA 254
Query 295 AGGCAAGAGGAGGAGAAGAAGGCGGAGAAGGGAATGCGTCTGGGGAAATACGAGCTAGGG 354
|||||||||||| | | ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 255 AGGCAAGAGGAG-A-A-GAAGGTGGAGAAGGGAATGCGTCTGGGTAAATACGAGCTTGGT 311
Query 355 AGGACGCTCGGCGAGGGTAATTTCGGTAAAGTTAAATTCGCTAAAGATACCGTCTCCGGT 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 312 AGGACGCTCGGCGAGGGTAATTTCGGTAAAGTTAAATTCGCTAGAGATACCGTCTCCGGT 371
Query 415 CATTCCTTCGCCGTTAAAATCATCGACAAGTCTCGTATCGCCGATCTCAACTTCTCCTTA 474
|| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 372 CAATCCGTCGCTGTTAAAATTATCGACAAGTCTCGTATCGCCGATCTCAACTTCTCCTTA 431
Query 475 CAG------ATAAAAAGAGAGATCCGGACTCTGAAAATGTTGAAACATCCCCACATTGTT 528
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 432 CAGGTTTGCATAAAAAGAGAGATCCGGACTCTGAAAATGTTGAAGCATCCCCACATTGTT 491
Query 529 AGATTACATGAGGTCTTGGCTAGCAAAACGAAAATTAATATGGTAATGGAACTTGTTACC 588
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGATTACATGAGGTATTGGCTAGCAAAACGAAAATTAATATGGTAATGGAACTTGTTACC 551
Query 589 GGAGGAGAATTGTTCGACAGAATTGTTTCCAACGGAAAATTAACAGAAACTGATGGAAGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GGAGGAGAATTGTTCGACAGAATTGTTTCCAACGGAAAATTAACAGAAACTGATGGAAGA 611
Query 649 AAAATGTTTCAGCAGCTTATCGATGGAATCAGCTACTGTCATAGCAAAGGTGTTTTCCAC 708
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 612 AAAATGTTTCAGCAGCTGATTGATGGAATCAGCTACTGTCACAGCAAAGGTGTTTTCCAC 671
Query 709 AGGGATCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGAT 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CGGGATCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGAT 731
Query 769 TTTGGCCTCAGTGCTCTGCCTCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGT 828
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TTTGGCCTCAGTGCCCTGCCTCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGT 791
Query 829 GGAAGTCCTAATTACGTTGCGCCTGAGGTTTTAGCTAACAGAGGCTACGATGGTGCAGCA 888
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 792 GGAAGTCCTAATTACGTTGCGCCTGAGGTTTTAGCCAACAGAGGTTACGATGGTGCAGCG 851
Query 889 TCAGACATATGGTCCTGTGGTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTC 948
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCAGATATATGGTCGTGTGGTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTT 911
Query 949 GACGACAGAAACCTTGCAGTTCTTTACCAGAAGATATGTAAAGGAGACCCACCAATACCA 1008
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 912 GACGATAGAAACCTTGTAGTTCTTTACCAGAAGATATGCAAAGGAGACCCACCAATACCA 971
Query 1009 AGATGGTTATCCCCGGGTGCAAGAACCATGATTAAGAGAATGCTTGATCCAAATCCAGTC 1068
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 972 AGATGGTTATCACCAGGTGCAAGAACCATGATTAAGAGAATGCTCGATCCAAATCCAGTC 1031
Query 1069 ACGAGGATCACAGTTGTGGGTATTAAAGCCAGCGAGTGGTTCAAACTTGAGTACATTCCT 1128
|| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1032 ACCAGGATCACAGTCGTGGGTATTAAAGCCAGCGAGTGGTTCAAACACGAGTATATTCCT 1091
Query 1129 TCAATTCCCGATGATGATGACGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATC 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TCAATTCCCGATGATGATGACGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATC 1151
Query 1189 CAAGAACTCGGATCAGAAGAAGGGAAGGGCAGTGATTCACCGACCATCATCAATGCGTTT 1248
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1152 CAAGAACTCGGATCAGAAGAAGGGAAGGGCAGTGATTCACCAACGATCATCAATGCGTTT 1211
Query 1249 CAGTTAATCGGAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGAACAAGAGAATGTA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 CAGTTAATCGGAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGAACAAGAGAATGTA 1271
Query 1309 TCAGAGAGGAGAATAAGATTCACTTCAAATAGCTCAGCAAAAGATTTACTGGAGAAAATC 1368
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1272 TCAGAGAGGAGAATAAGATTCACTTCAAATAGCTCCGCAAAAGATTTACTCGAGAAAATC 1331
Query 1369 GAAACAGCCGTTACAGAAATGGGATTCAGTGTACAAAAGAAACATGCCAAGTTAAGAGTA 1428
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1332 GAAACAGCCGTTACAGAGATGGGATTCAGTGTACAAAAGAAACATGCGAAGTTAAAAGTA 1391
Query 1429 AAACAAGAAGAAAGAAACCAGAAAGGTCAAGTTGGTTTATCAGTAACAGCTGAGGTTTTC 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AAACAAGAAGAAAGAAACCAGAAAGGTCAAGTTGGTTTATCAGTAACAGCTGAGGTTTTC 1451
Query 1489 GAGATAAAGCCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTA 1548
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 GAGATAAAACCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTA 1511
Query 1549 TATAGACAGTTGTACGAGAGACTATTAAAAGACGTGGGCACATCCTCGCCGGAGCAAGAG 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TATAGACAGTTGTACGAGAGACTATTAAAAGACGTGGGCACATCCTCGCCGGAGCAAGAG 1571
Query 1609 ATAGTAAC-T--TAGGTGTTGGTGTTTTCGGCTGAA-GAGATATACATAGCTCTAATAAT 1664
|||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1572 ATAGTATCCTAGTAGGTGTTGGTGTTTTCGGCTGAAAGAGATATACATAGCTCTAATAAT 1631
Query 1665 TTATCATATGGAACACACCATCCATGTTCATATAATTTATTATCTTAAGTATATATAAAA 1724
||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 1632 TTATCATATGGTACACACCATCCATGTTCATA-A-TTTATTATCTTAAGTATATATCAAA 1689
Query 1725 GGAGCTCGATTTATATGATTAGTGCAAATA 1754
||||||||||||||||||||||||||||||
Sbjct 1690 GGAGCTCGATTTATATGATTAGTGCAAATA 1719
> Ahg923153 jgi|Araly1|923153|scaffold_104434.1
Length=1324
Score = 913 bits (494), Expect = 0.0
Identities = 1042/1297 (80%), Gaps = 76/1297 (6%)
Strand=Plus/Plus
Query 322 AAGGGAATGCGTCTGGGGAAATACGAGCTAGGGAGGACGCTCGGCGAGGGTAATTTCGGT 381
|||||||||| | | || ||||||||||| |||||||| || || ||||| || ||| |
Sbjct 30 AAGGGAATGCTTGTTGGTAAATACGAGCTTGGGAGGACACTTGGAGAGGG-AAATTCCGC 88
Query 382 AAA-GTTAAATTCGCTAAAGATACCGTCTCCGGTC-ATTCC-TTCGCCGTTAAAATCATC 438
||| ||||||||||||| |||||| | ||||| | | || |||||| | |||||||||
Sbjct 89 AAAGGTTAAATTCGCTATAGATACTATTTCCGG-CGA-ACCATTCGCCATCAAAATCATC 146
Query 439 GACAAGTCTCGTATCGC-CGATCTCAACTTCTCCTTACAGATAAAAAGAGAGATCCGGAC 497
|| ||||| |||||| | || | | ||| |||| || ||||| || |||||||| || ||
Sbjct 147 GATAAGTCGCGTATCACTCG-TATTAACGTCTCTTTTCAGATCAAGAGAGAGATTCGAAC 205
Query 498 TCTGAAAATGTTGAAA-CATCCCCACATTGTTAGATTACATGAGGTCTTGGCTAGCAAAA 556
|| ||| | || ||| ||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 206 ACTCAAAGT-TTTAAAGCATCCAAACATTGTCAGATTACATGAGGTCTTGGCAAGCAAAA 264
Query 557 CGAAAATTAATATGGTAATGGAACT-TGTTACCGGAGGAGAATTGTTCGACAGAATTGTT 615
| || ||| | ||||| ||||| | ||| || || ||||| || || |||||||||||
Sbjct 265 CCAAGATTTACATGGTTCTGGAA-TGTGTCACTGGGGGAGACTTATTTGACAGAATTGTC 323
Query 616 TCCAACGGAAA-ATTAACAGAAACTGATGGAAGAAAAATGTTTCAGCAGCTT-ATCGATG 673
||||| ||||| || | ||||| || ||| |||||||||||||||| || || ||||
Sbjct 324 TCCAAAGGAAAGCTT-TCTGAAACAGAGGGACTAAAAATGTTTCAGCAG-TTGATTGATG 381
Query 674 GAATCAGCTACTGTCATAGCAAAGGTGTTTTCCACAGGGATCTCAAGCTAGAGAATGTTC 733
|||||||||| ||||||| ||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 382 GAATCAGCTATTGTCATAACAAGGGAGTTTTTCACAGAGATCTCAAGCTAGAGAATGTTC 441
Query 734 TTCTTGATGCAAAGGGACATATAAAGATCACTGATTTTGGCCTCAGTGCTCTGCCTCAGC 793
|||||||||||||||| || || |||||||||||||||||||| |||||||||||||| |
Sbjct 442 TTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGCCTCAAC 501
Query 794 ATTTTAGGGATGACGGATTGTTGCATACAACCTGTGGAAGTCCTAATTACGTTGCGCCTG 853
|||||||||| || || ||| | |||||||| ||||| |||||||| || || |||||||
Sbjct 502 ATTTTAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGCGCCTG 561
Query 854 AGGTTTTAGCTAACAGAGGCTACGATGGTGCAGCATCAGACATATGGTCCTGTGGTGTAA 913
||||| ||||||||| ||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 562 AGGTTCTAGCTAACAAAGGGTATGATGGTGCAGCATCAGATATATGGTCATGTGGAGTAA 621
Query 914 TCTTGTATGTGATTCTAACCGGATGTCTTCCTTTCGACGACAGA-AACCTTGCAGTTCTT 972
|||||||||| ||||| || |||||||| ||||| || || | |||||||||||| ||
Sbjct 622 TCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGAT-GCTAACCTTGCAGTTATT 680
Query 973 TACCAGAAGATATGT-AAAGGAGA-CCCACCAATACCAAGATGGTTATCCCCGGGTGC-A 1029
| || |||||||| | ||||| || ||| |||||||| |||||| |||| || ||||| |
Sbjct 681 TGCCGGAAGATAT-TCAAAGGGGATCCC-CCAATACCTAGATGGATATCACCTGGTGCTA 738
Query 1030 AGAACCATGATTAAGAGAATGCTTGATCCAAATCCAGTCACGAGGATCACAGTTGTGGGT 1089
| ||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | |
Sbjct 739 A-AACCATGATCAAGAGAATGCTTGATCCAAGTCCAGTCACGAGGATGACAATCGCAAAT 797
Query 1090 ATTAAAGCCAGCGAGTGGTTCAAACTTGAGTACATTCCTTCAAT-TCCCGATGATGATGA 1148
||||| || | || |||||||||| ||| |||| |||||||| | | |||||||||||
Sbjct 798 ATTAAGGCTAATGATTGGTTCAAACATGACTACACTCCTTCAAAATAC-GATGATGATGA 856
Query 1149 CGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATCCAAGAAC-TCGGATCAGAAG 1207
|| | | || | | ||| |||||||||| | ||||| ||||
Sbjct 857 TGA--------T-G-CA-------T-A--CTT----AATCCAAGAAGAT-GGATCTGAAG 891
Query 1208 AAGGGAAGGGCAGTGATTCACCGACCATCATCAATGCGTTTCAGTTAATCGGAATGTCTT 1267
||| ||| || |||||| || ||||| ||||| || ||| |||| || |||||||| |
Sbjct 892 AAGAAAAGAGCCCTGATTCTCCAACCATTATCAACGCATTTAAGTTGATTGGAATGTCAT 951
Query 1268 CCTTTCTTGACCTGTCCGGTTTCTTTGA-ACAAGAGAATGTATCAGAGAGG-AGAATAAG 1325
| ||||| ||||| || ||||||||||| | ||||||| ||||||||||| ||| ||||
Sbjct 952 CATTTCTCGACCTCTCAGGTTTCTTTGAGA-AAGAGAAAGTATCAGAGAGACAGA-TAAG 1009
Query 1326 ATTCACTTCAAATAGCTCAGCAAAAGATTTACTGGAGAAAATCGAAAC-AGCCGTTACAG 1384
|||||| |||||||||| ||| | |||||| |||||||||||||||| | | ||||||
Sbjct 1010 ATTCACGTCAAATAGCTTAGCCATAGATTTGTTGGAGAAAATCGAAACGATCT-TTACAG 1068
Query 1385 AAATGGGATTCAG-TGTACAAAAGAAACATGCCAAG-TTAAGAGTAAAACAA-GAAGAAA 1441
| ||||| ||| | | |||| |||||||| || ||| |||| || || ||| |||||||
Sbjct 1069 AGATGGGTTTCTGCT-TACAGAAGAAACACGC-AAGGTTAAAAGCAAT-CAAAGAAGAAA 1125
Query 1442 GAAAC-CAGAAAGGTCAA-GTTGGTTTATCAGTAACAGCTGAGGTTTTCGAGATAAAG-C 1498
| | | || ||||| ||| | |||||||||||||| ||||||||||||||||||| | |
Sbjct 1126 GCA-CTCAAAAAGGGCAATGC-GGTTTATCAGTAACGGCTGAGGTTTTCGAGATAA-GTC 1182
Query 1499 CGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGT-T-TATATAGACA 1556
|||| || || |||||||| ||||||||||| |||| |||| ||| | |||||| |||
Sbjct 1183 CGTCCCTAAATGTGGTTGAACTAAGAAAATCACATGGTGATT--TGTCTCTATATAAACA 1240
Query 1557 GTTGTACGAGAGACTATTAAAAGA-CGTGGGCACATC 1592
||||||||||||| |||| || || | ||||| ||||
Sbjct 1241 GTTGTACGAGAGATTATTGAATGAAC-TGGGCTCATC 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5