BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17520.1
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929605 jgi|Araly1|929605|scaffold_302062.1 1367 0.0
> Ahg929605 jgi|Araly1|929605|scaffold_302062.1
Length=948
Score = 1367 bits (740), Expect = 0.0
Identities = 867/929 (93%), Gaps = 5/929 (1%)
Strand=Plus/Plus
Query 1 AGTGTAACAAAAAT-GGGGTTAGAGAG-GAA-AGTGTACGGTTTGGTTATGGTATCTTTG 57
||||||| |||||| ||||| | |||| ||| ||||||||||||||||||||||||||||
Sbjct 14 AGTGTAATAAAAATGGGGGTAACAGAGAGAAGAGTGTACGGTTTGGTTATGGTATCTTTG 73
Query 58 GTACTTATGGCTATTGCAACGATGTGTTGTGTCCAAGCTACGATCGAGGAAGAAGCGGCT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GTACTTATGGCTATTGCAACGATGTGTTGTGTCCAAGCTACGATCGAGGAAGAAGCGGCT 133
Query 118 AAGGATGAATCATGGACTGATTGGGCAAAGGAGAAGATCGGTCTCAAGCACGAAGACAAC 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 134 AAGGATGAATCATGGACTGATTGGGCCAAGGAGAAGATCGGTCTCAAGCACGAAGACAAC 193
Query 178 ATCCAACCCACTCACACCACCACGACCGTTCAAGACGACGCTTGGAGAGCGAGTCAAAAA 237
|||||||||||||| |||||||| || || |||||||||||||||||||||||| |||||
Sbjct 194 ATCCAACCCACTCATACCACCACAACTGTCCAAGACGACGCTTGGAGAGCGAGTGAAAAA 253
Query 238 GCCGAGGACGCAAAGGAGGCGGCTAAACGCAAAGCAGAGGAAGCGGTTGGAGCCGCGAAG 297
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 254 GCCGAGGACGCAAAAGAGGCGGTTAAACGCAAAGCAGAGGAAGCGGTTGGAGCCGCAAAG 313
Query 298 GAGAAAGCGGGTTCGGCATACGAGACAGCTAAATCGAAAGTTGAG-GAGGGTTTGGCTTC 356
||||||| ||| ||||| |||||||||||||||||||||| || | |||||||||| |||
Sbjct 314 GAGAAAGTGGGATCGGCTTACGAGACAGCTAAATCGAAAGCTG-GCGAGGGTTTGGGTTC 372
Query 357 TGTAAAAGACAAGGCCTCGCAGAGTTACGACTCAGCTGGTCAAGTTAAGGATGACGTGTC 416
| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 373 CCTGAAAGACAAGGCCTCGCAGGGGTACGACTCAGCTGGTCAAGTTAAGGATGACGTGTC 432
Query 417 TCACAAGTCAAAGCAAGTTAAAGATAGCTTGTCGGGAGACGAAAACGATGAGTCTTGGAC 476
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 433 TCACAAGTCAAAGCAAGTTAAAGATAGCTTGTCCGGAGATGAAAACGATGAGTCCTGGAC 492
Query 477 CGGTTGGGCCAAAGAGAAAATCGGAATCAAGAACGAAGACATCAACAGCCCTAACTTGGG 536
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 493 TGATTGGGCCAAAGAGAAAATCGGAATCAAGAATGAAGACATCAATAGCCCTAACTTGGG 552
Query 537 AGAGACGGTATCTGAGAAGGCAAAAGAAGCTAAGGAAGCGGCTAAACGCAAAGCAGGAGA 596
|||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 553 AGAGACAGTGTCGGAGAAGGCTAAAGACGCTAAGGACGCTGCTAAACGCAAAGCAGGAGA 612
Query 597 TGCTAAAGAGAAGTTGGCGGAGACAGTTGAGACGGCGAAAGAGAAGGCGAGCGATATGAC 656
|||||| |||||||||| ||| || |||||| | ||||||||||||||||||||||||||
Sbjct 613 TGCTAAGGAGAAGTTGGAGGAAACGGTTGAGGCCGCGAAAGAGAAGGCGAGCGATATGAC 672
Query 657 GAGTGCAGCTaaggagaaggcggagaagttgaaggaggaagcagagagagagagtaagag 716
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 673 GAGTGCAGCTAAGGAGAAGGCGGAGACGGTGAAGAAGGAAGCAGAGAGAGAGAGTAAGAG 732
Query 717 tgcgaaggagaaAATTAAAGAAAGTTATGAGACTGCAAAATCAAAAGCCGATGAGACTTT 776
||||||||||| || ||| ||||| || |||||||| ||||| |||||||||||||||||
Sbjct 733 TGCGAAGGAGACAAGTAAGGAAAGCTACGAGACTGCGAAATCTAAAGCCGATGAGACTTT 792
Query 777 AGAGTCCGCGAAAGATAAGGCGTCGCAGAGTTACGACTCAGCTGCGCGTAAATCGGAGGA 836
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 793 GGAGTCTGCAAAAGATAAGGCGGCGCAGAGTTACGACTCAGCTGCGCGTAAATCGGAGGA 852
Query 837 AGCTAAAGATACCGTGTCTCACAAGTCAAAACGTGTTAAAGAGAGCTTGACCGACGATGA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AGCTAAAGATACCGTGTCTCACAAGTCAAAACGTGTTAAAGAGAGCTTGACCGACGATGA 912
Query 897 TGCTGAGCTCTGAGAAGTTGGGAGAAACT 925
||||||||||| |||||||||||||||||
Sbjct 913 TGCTGAGCTCTAAGAAGTTGGGAGAAACT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5