BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17609.2
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479237 jgi|Araly1|479237|fgenesh2_kg.3__1938__AT3G17609.2 977 0.0
> Ahg479237 jgi|Araly1|479237|fgenesh2_kg.3__1938__AT3G17609.2
Length=655
Score = 977 bits (529), Expect = 0.0
Identities = 615/656 (94%), Gaps = 7/656 (1%)
Strand=Plus/Plus
Query 19 GCAATTTCCTTTGGTTTGATATTCTCTTCAACCTCTTACCTCTCTATTCTCGTCTTTAGC 78
||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| |
Sbjct 1 GCAATATCCTTTGGTTTAATATTCTCTTGAACCTCTTACCTCTCTACTCTGGTCTTTACC 60
Query 79 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTCCAACGACCCAATGGGAACTCGAGT 138
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 61 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTTCAACGACCCAATGGGCACTCGAGT 120
Query 139 TCGTCTTCTTCCCACAAGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 198
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTCTTCTTCCCACATGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 180
Query 199 CCTGACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGACGATGGAGTC 258
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCTAACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGATGATGGAGTC 240
Query 259 AACAATCCGGAGCTTGACCAGACTCAAAATGGAGTCTCTACAGCTAAACGCCGCCGTGGA 318
|| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 241 AATAATCCGGAGCTTGACCCGACTCAAAATGAAGTCTCTACCGCTAAACGCCGCCGTGGT 300
Query 319 AGAAACCCTGTTGATAAAGAATATAGAAGCCTCAAGAGATTATTGAGGAACAGAGTATCA 378
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 301 CGAAACCCAGTTGATAAAGAGTATAGAAGCCTCAAGAGATTGTTGAGGAACAGAGTATCA 360
Query 379 GCGCAACAAGCAAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 438
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCACAACAAGCGAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 420
Query 439 GAGTTACAGAACAACAATGACCAGCTCGAAGAGAAGATTTCTACTTTGACGAACGAGAAC 498
|||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 421 GAGTTACAGAACAACAATGATCAACTTGAAGAGAAGATATCGACTTTGACGAACGAGAAC 480
Query 499 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAACTGATGACAATCACTAAATA 558
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAGCTGATGACAATCACTAAATA 540
Query 559 TTTACCCTTTAATCCATTGTTCAGTGTTGTATGATTATctttctttctttttt-ggtttt 617
||||||||| |||||||||||||||||||||| |||||||| ||| |||||| |||||
Sbjct 541 TTTACCCTTGAATCCATTGTTCAGTGTTGTATAATTATCTTA-TTTATTTTTTTGGTTTC 599
Query 618 ggtttgtatacactttttgTTCGAATAACA-T---T-CACTTTGAGCATCATTGTC 668
|||||||||||| ||||||||||||||||| | | |||||||||||||||||||
Sbjct 600 GGTTTGTATACAATTTTTGTTCGAATAACAATCAGTTCACTTTGAGCATCATTGTC 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24513035631
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5