BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17670.2 Length=885 Score E Sequences producing significant alignments: (Bits) Value Ahg479250 jgi|Araly1|479250|fgenesh2_kg.3__1951__AT3G17670.1 1195 0.0 > Ahg479250 jgi|Araly1|479250|fgenesh2_kg.3__1951__AT3G17670.1 Length=832 Score = 1195 bits (647), Expect = 0.0 Identities = 704/732 (96%), Gaps = 1/732 (0%) Strand=Plus/Plus Query 16 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 60 Query 76 CTCAGGTGAACAAGTGAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGAAGACAAGG 135 |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 CTCAGGAGAACAAGTAAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGGAGACAAGG 120 Query 136 CTCCTTCCAGATTCTCGAGACTTTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCA 195 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCCTTCCAGATTCTCGAGACATTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCC 180 Query 196 CTGCGCTTGCCTCGGCCGATGCGGCTCCGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 255 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 CTGCGCTTGCCTCGGCCGATGCGGCTCTGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 240 Query 256 CATCCTACGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTATGTGG 315 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 CATCCTCCGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTCTGTGG 300 Query 316 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACGGCTTTAGCGTT 375 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 301 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACCGCTTTAGCGTT 360 Query 376 AACCAACAATGCTCTCTCTCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 435 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AACCAACAATGCTCTCTATCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 420 Query 436 CACTCAGGCTTTAGAGCTGAAACCCTACGGTGGCTTGCATAGAATATTCAAACACAGATC 495 ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 421 CACTCAGGCATTAGAGCTGAAACCATACGGTGGCTTGCATAGAATCTTCAAACACAGATC 480 Query 496 AGTAGCAAAATTGGGAATGCTTGATTACTCTGGGGCTCTTGAAGATATAAGCCAAGCTCT 555 |||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 481 AGTAGCAAAACTGGGAATGCTTGATTATTCTGGGGCTCTTGAAGATATAAGCCGTGCTCT 540 Query 556 AGCTTTAGCTCCTAACTATTCTGAGCCCTACATATGCCAAGGGGATGTCTACGTAGCAAA 615 ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 541 AGCATTAGCTCCTAACTATTATGAGCCATACATATGCCAAGGGGATGTCTACGTAGCAAA 600 Query 616 AGGTCAATATGATCTTGCAGAGAAGTCATACTTGACATGTCTAGAGATAGATCCTTCTCT 675 |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 601 GGGTCAATACGATCTTGCAGAGAAGTCATACGTGAAATGTCTAGAGATAGATCCTTCTCT 660 Query 676 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAAACTTCAACAGAAAGTTGTTGAACT 735 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 661 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAACCTTCAACAGAAAGTTGTTGAAGT 720 Query 736 AGATTTGA-ATA 746 |||| ||| ||| Sbjct 721 AGATGTGACATA 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32785708620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5