BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17800.2 Length=1700 Score E Sequences producing significant alignments: (Bits) Value Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875 1991 0.0 > Ahg904747 jgi|Araly1|904747|Al_scaffold_0003_1875 Length=1281 Score = 1991 bits (1078), Expect = 0.0 Identities = 1218/1286 (95%), Gaps = 7/1286 (1%) Strand=Plus/Plus Query 279 ATGGATGCCTTGACCTCGAGTTTGGTTCGATCTCCCATCGTACCATCGAGAACTTCCGAC 338 ||||||||| |||| |||||||||||||||||||| || ||||| | |||||||||||| Sbjct 1 ATGGATGCCGTGACGGCGAGTTTGGTTCGATCTCCCGTCTTACCACCTAGAACTTCCGAC 60 Query 339 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACGCGTTCTGGTTCT 398 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 AACGGTTCTGGATCTATGTTCCTTACCGCCAGTGGCCCTGGATTCACTCGTTCTGGTTCT 120 Query 399 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAAGACTTCAACTTCGTTTAAGGGTATGTCCCAAATCTCTTCAAAACGCGTCTGCTAGA 180 Query 459 TCCTCAAGATCATTACAGAGCTTAACAACGACTGCTAAAACTCGGAGAAGTTTTGTGGTT 518 |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| Sbjct 181 TCCTCAAGATCATTGCAAAGCTTAACAACGACTGCTAAAACTCGGACAAGTTTTGTGGTT 240 Query 519 AGAGCTTCTTCAGCGTCTAATGATGCTTCATCTGGTTCTTCCCCCAAACCGATCGCTCCG 578 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 AGAGCTTCTTCAGCGTCTAATGATGCTTCCTCTGGTTCTTCCCCCAAACCGATCGCTCCG 300 Query 579 CTCCAGCTGCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 638 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTCAGCTTCAATCGCCTGCTGGTCAGTTTCTGTCTCAGATTTTGGTGAGCCATCCTCAT 360 Query 639 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGAGCAGCTTCAAACTGATCGGGACTCTCAG 698 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 361 CTTGTGCCTGCAGCTGTTGAACAGCAGCTTGACCAGCTTCAAACTGATCGGGACTCTGAT 420 Query 699 GGACAGAACAAAGATTCAGCGTCTGTACCTGGAACCGACATCGTTCTCTACAGGAGAATT 758 ||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct 421 GGACAGAACAAGGATGCATCGTCTGTACCTGGAACCGACATCGTTCTCTACAAGAGAATT 480 Query 759 GCGGAG-TTGAAGGAAAACGAGAGAAGAAGAACATTGGAAGAGATTTTGTATGCATTGGT 817 |||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 481 GCGGAGGTT-AAGGAAAACGAGAGAAGAAGGACATTGGAGGAGATTTTGTATGCATTGGT 539 Query 818 GGTTCAAAAGTTCATGGAAGCTAACGTATCACTTGTACCTTCAGTAAGCCCATCTTCAGA 877 ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 540 GGTTCAAAAGTTCATGGAATCTAATGTATCACTTGTACCATCAGTAAGCCCATCTTCAGA 599 Query 878 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTCGAGCGGCTTCACTC 937 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 600 TCCGTCTGGTCGGGTTGATACTTGGCCGACCAAAGTGGAGAAACTTGAGCGGCTTCACTC 659 Query 938 GCCCGAGATGTACGAGATGATTCACAACCATCTTGCCTTGATTCTTGGAAGCAGAATGGG 997 ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 660 GCCCGAGATGTACGAGATGATTCACAACCATCTAGCCCTCATTCTTGGAAGCAGAATGGG 719 Query 998 TGATCTGAACTCTGTTGCACAGATAAGCAAGCTCAGAGTTGGCCAAGTTTACGCTGCTTC 1057 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 720 TGATCTGAACTCTGTTGCTCAGATAAGCAAGCTCAGAGTTGGGCAAGTTTACGCTGCTTC 779 Query 1058 TGTGATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 1117 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGTTATGTATGGATATTTCTTGAAGAGGGTGGACCAAAGGTTTCAGCTTGAGAAGACGAT 839 Query 1118 GAAGATTCTTCCGGGTGGGTCGGATGAAAGTAAAACAAGCGTTGAGCAAGCC-GAGGGGA 1176 |||||||||||| ||||||| |||||||||||||||||||||||| ||| || |||| || Sbjct 840 GAAGATTCTTCCTGGTGGGTTGGATGAAAGTAAAACAAGCGTTGAACAA-CCAGAGGAGA 898 Query 1177 CGGCAACATATCAGGCGGCTGTATCGTCTCACCCAGAGGTTGGTGCATTTGCGGGCGGAG 1236 | ||||||||||||| | ||| |||||||||||||||||| ||||||| ||||||| Sbjct 899 AAACGACATATCAGGCGG-T--ATCCTCTCACCCAGAGGTTGGTTCATTTGCAGGCGGAG 955 Query 1237 TTAGTGCTAAGGGCTTCGGCAGCGAGATTAAACCATCCCGATTAAGGTCATATGTGATGT 1296 |||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct 956 TTAGTGCTAAGGGCTTTGGCAGTGAGATTAAACCGTCCCGGTTAAGGTCATACGTGATGT 1015 Query 1297 CATTTGATGCGGAGACGCTGCAGAGATACGCCACTATAAGATCAAGAGAAGCAGTTGGAA 1356 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1016 CATTCGATGCGGAGACGCTTCAGAGATACGCCACTATAAGATCAAGAGAAGCTGTTGGAA 1075 Query 1357 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCTGAGATTGTAATAACACCGGAGG 1416 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 1076 TCATCGAGAAGCACACAGAGGCATTGTTTGGTAAGCCCGAGATTGTAATAACACCAGAAG 1135 Query 1417 GCACAGTCGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1476 | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GAACGGTTGATTCATCGAAGGACGAACAGATAAAGATCAGCTTCGGTGGAATGAAGAGGC 1195 Query 1477 TCGTCTTGGAGGCAGTTACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1536 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TCGTCTTGGAGGCTGTAACTTTCGGGTCGTTCCTTTGGGATGTTGAGAGCCATGTAGATG 1255 Query 1537 CGAGGTACCACTTTGTATTGAACTAA 1562 | |||||||||||||||||||||||| Sbjct 1256 CTAGGTACCACTTTGTATTGAACTAA 1281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63763070130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5