BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17810.1
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479265 jgi|Araly1|479265|fgenesh2_kg.3__1966__AT3G17810.1 2477 0.0
> Ahg479265 jgi|Araly1|479265|fgenesh2_kg.3__1966__AT3G17810.1
Length=1688
Score = 2477 bits (1341), Expect = 0.0
Identities = 1596/1715 (93%), Gaps = 33/1715 (2%)
Strand=Plus/Plus
Query 22 TTAAGTTCTTTCCTTTGTTCTTCGATTTGATCACCAACTCTCACATATTTCGAAATCGTC 81
||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1 TTAAGTTGTTTACTTTGTTCTTCGATTTGATCACCAACTCTCACATATCTCGATATCCAA 60
Query 82 ACACTTTGTTGCGTGTCGTCTTCTCTCTCTCATAAT-TCTTGAGTTTCACGTCTCAAGAT 140
|||||||||||||||| ||||||| ||||| | | |||| | | | || | ||
Sbjct 61 ACACTTTGTTGCGTGTTATCTTCTCCCTCTC-T-CTCTCTT-A---T-A-ATC-CTTGAG 111
Query 141 TTGATCACTTCTGCCAATTTTCCAGATTGATCTCTCTAATTATGGCTTCCATGAGTTTCG 200
|| |||| ||| ||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 112 TT--TCACGTCT--CAA---GCCAGATTGATCTCTGTAATCATGGCTTCCATGAGTTTCG 164
Query 201 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 224
Query 261 CCTCTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 320
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CAACTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 284
Query 321 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCCAATCCTTTCGTGA 380
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 285 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCTAATCCTTTCGTGA 344
Query 381 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGATGAAGGTT 440
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 345 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGACGAAGGTT 404
Query 441 GGGGGGCCGTCATCGCCAAAACCGTATCTTTAGATGCATCCAAAGTTATCAACGTGACAC 500
|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 405 GGGGAGCCGTCATCGCCAAAACCGTATCATTAGATGCAGCCAAAGTTATCAACGTGACAC 464
Query 501 CTAGATATGCTCGGCTACGAACCGGATCCAATGGCTCAGCCAAAACAGATGTAATTGGGT 560
|| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 465 CTCGATATGCTCGGCTACGAACTGGTTCCAGTGGCTCAGCCAAAACAGATGTAATTGGGT 524
Query 561 GGCAGAACATAGAACTCATCAGTGACAGACCTCTTGAAACCATGCTCAAAGAGTTTGAGC 620
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 525 GGCAGAACATAGAACTCATCAGTGACCGACCTCTTGAAACCATGCTCAGAGAGTTTGAGC 584
Query 621 GGTTGAAAAAAGAGTATCCTGATCGGATTCTGATTGCTTC-AGTCATGGAGGAATATAAC 679
| ||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||
Sbjct 585 GATTGAAAAAAGAGTATCCTGATCGGATTTTGATTGCTTCCA-TCATGGAGGAATACAAC 643
Query 680 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 703
Query 740 ATCAACTTCTCGTGTCCTCATGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 799
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCAACTTCTCGTGTCCTCACGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 763
Query 800 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTA 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTT 823
Query 860 TGGGCTAAGATGACTCCTAATATTACTGACATAACTGAGCCTGCTAGGGTGTCACTAAAA 919
||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||
Sbjct 824 TGGGCTAAGATGACTCCTAATATCACTGACATAACAGAGCCTGCAAGGGTATCTCTAAAA 883
Query 920 TCCGGATGTGAAGGAATTGCAGCGATCAATACAATCATGAGTGTAATGGGAATTGATATG 979
|| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 884 TCAGGATGTGAAGGAATTTCAGCTATCAATACAATCATGAGTGTTATGGGAATTGATATG 943
Query 980 AAGACGTTGCGTCCTGAGCCATGCGTTGAAGGTTACTCCACTCCAGGGGGATACTCTTAT 1039
|||||| |||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 944 AAGACGCTGCGTCCTGAGCCATGCGTTGAAGGTTATTCAACTCCAGGAGGCTACTCTTAT 1003
Query 1040 AAGGCCGTTCGCCCAATTGCACTGGCAAAAGTTATGAACATTGCCAAAATGATGAAATCT 1099
|||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1004 AAGGCCGTTCGCCCCATTGCGCTTGCGAAAGTTATGAACATTGCCAAAATGATGAAATCT 1063
Query 1100 GAGTTTAGTGAGGATCGCTCGCTTTCGGGTATTGGAGGAGTTGAAACTGGCTATGATGCC 1159
||||| ||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1064 GAGTTCAGTGAAAATCACTCGCTTTCGGGTATCGGAGGTGTTGAAACTGGCTATGATGCC 1123
Query 1160 GCTGAATTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1219
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCTGAGTTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1183
Query 1220 GGCTATGGTCATGTGAAAACCCTTTGCGCTGAGCTGAAAGATTTCATGAAACAACACAAC 1279
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1184 GGCTATGGTCATGTGAAAACCCTTTGCGCCGAGCTTCAAGATTTCATGAAACAACACAAC 1243
Query 1280 TTCTCTACAATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACAACACACACAGAT 1339
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1244 TTCTCGACGATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACGACACACACAGAT 1303
Query 1340 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGAGAAAAGCTGAGAAGAGAGGCTTGAAA 1399
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1304 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGCGAAAAGCTGAGAAGAGAGGCTTGAAA 1363
Query 1400 TCTGATAAAGATTGGACCGGGGATGGGTTCGTGAAGGAGACTGAGAGTATGGTTTCTAAC 1459
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1364 TCTGACAAAGATTGGACCGGAGATGGGTTCGTGAAGGAGACTGAAAGTATGGTTTCTAAC 1423
Query 1460 TAAGTTAGTAGCCTGATGAAGT--T-ATGACCACCCAAATATTTCAATAAAGGTTCAGCA 1516
||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| |||
Sbjct 1424 TAAGTTAGTAGCCTGTTGAAGTAGTGATGACCACCCAAATATTT-AATAAAGGTTCTGCA 1482
Query 1517 ACTTCATTCACAACTCACATGCAAATTACGAAGGCTCTTTCTTTCAAATGTTTAAAATCA 1576
|||||||||||| ||| || || | | | ||||||||||||||||||||| |||||
Sbjct 1483 GCTTCATTCACAA-TCAAAT-CAC-T-A--A-GGCTCTTTCTTTCAAATGTTTCAAATCG 1535
Query 1577 ACTTC-TTAAATCTCACTTGAAAAGAAATAACTAAATTTTATGTTTCTTAATTTTCTTCT 1635
||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1536 ACTTCGTTAA-TCTCACTTGAAAGGAAATAACTAAATTT-ATGTATCTTAATTTTCTTCT 1593
Query 1636 CGTTGTGTATTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTACTTCAAGTT 1695
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1594 CCTTGTGTACTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTCCTTCAAGTT 1653
Query 1696 GGCTTAAATTTTGGCCAATAATAATACCATAGACC 1730
||||||| |||||||||||||||||| ||||||||
Sbjct 1654 GGCTTAATTTTTGGCCAATAATAATATCATAGACC 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65248589685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5