BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G17998.1

Length=1911
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1        2671    0.0  
  Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1        1611    0.0  


> Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1
Length=1781

 Score = 2671 bits (1446),  Expect = 0.0
 Identities = 1691/1800 (94%), Gaps = 53/1800 (3%)
 Strand=Plus/Plus

Query  62    GTGCGAATTGATGCAGCAGAGAGGACGATCCGTCAACCGCAGATCACGAAGCTTCTCTAG  121
             ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1     GTGTGAATTGATGCAGCAGAGAGGACGATCCGTCAATCGCAGATCACGAAGCTTCTCTAG  60

Query  122   ATCCAGACTCGCCGTCGAAGGCCACTGAATTACTCTCTCCCCTCTCTTGGCAGATCTTCT  181
             |||||||||||| ||||||||||| |||||||||||||||        | ||||||  ||
Sbjct  61    ATCCAGACTCGCTGTCGAAGGCCATTGAATTACTCTCTCC--------G-CAGATC--CT  109

Query  182   TCTTCGTTTTTTCCCGACAAACGACATTTCCGAAATGGCTGCATCGTACGAAGAAGAGCG  241
             ||||| ||    || || ||  | | |  |  |  | | |  | || | ||||| |  ||
Sbjct  110   TCTTC-TT----CC-GA-AATGG-C-TG-C--A--TCG-T--A-CG-AGGAAGA-G--CG  147

Query  242   TGATATTCAGAAGAATTACTGGATAGAGCATTCCGCTGATCTGACTGTTGAAGCTATGAT  301
             |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  148   TGATATCCAGAAGAATTACTGGATAGAGCATTCGGCTGATTTGACTGTTGAAGCTATGAT  207

Query  302   GCTTGACTCGAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT  361
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208   GCTTGACTCCAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT  267

Query  362   CCCTCCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG  421
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268   CCCTTCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG  327

Query  422   TGAATTAGCTCAAAAGGCTGGTGAACTCATTGCTCTTGACTTCATTGATAACGTTATCAA  481
             |||||| |||||||| ||||||||||||||||||||||||||||||||||  || |||||
Sbjct  328   TGAATTGGCTCAAAAAGCTGGTGAACTCATTGCTCTTGACTTCATTGATAGTGTCATCAA  387

Query  482   GAAGAATGAAAGTATCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC  541
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  388   GAAGAATGAAAGTGTCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC  447

Query  542   ATCCCCTGACCTCAAGATCACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCT  601
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  448   ATCCCCTGACCTCAAGATCACTGATGGATCCCTTGACTTGATTTTCTCCAACTGGCTGCT  507

Query  602   CATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAA  661
              ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct  508   TATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCTGAAAGGATGGTTGGATGGATCAA  567

Query  662   GGTTGGAGGATACATTTTCTTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCG  721
             |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  568   GGTTGGAGGATATATTTTCTTCCGTGAATCTTGCTTCCACCAATCCGGGGACAGTAAGCG  627

Query  722   GAAATCCAACCCCACTCACTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAAGAGTG  781
             |||||||||||| ||||||||||||||||| |||||||||  ||||||||||||||| ||
Sbjct  628   GAAATCCAACCCGACTCACTACCGTGAACCTCGTTTCTATAGCAAGGTCTTTCAAGAATG  687

Query  782   TCAGACTCGGGATGCTGCTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT  841
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  688   TCAGACTCGGGATGCTGCTGGGAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT  747

Query  842   TGGAGCTTATGTCAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT  901
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  748   TGGAGCTTATGTAAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT  807

Query  902   CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAG  961
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  808   CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTTCAATACAAATCCAG  867

Query  962   TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA  1021
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868   TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA  927

Query  1022  GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGT  1081
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  928   GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTGTTAGATGT  987

Query  1082  TGGGTGTGGCATTGGTGGAGGTGACTTCTACATGGCTGAGAAGTTTGATGTTCACGTTGT  1141
             ||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct  988   TGGGTGTGGCATTGGTGGAGGTGACTTTTATATGGCTGAGAAGTTTGATGTTCATGTTGT  1047

Query  1142  TGGTATCGATCTTTCTGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAG  1201
             |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  1048  TGGTATCGATCTCTCTGTCAACATGATCTCTTTCGCGTTGGAACGTGCTATTGGACTCAA  1107

Query  1202  CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACCACAAAACACTACCCAGATAATTCGTT  1261
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  1108  CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACTACAAAACACTACCCAGATAATTCATT  1167

Query  1262  TGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG  1321
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1168  CGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG  1227

Query  1322  GACTTTCTTCAAATGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG  1381
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1228  GACTTTCTTCAAGTGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG  1287

Query  1382  CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA  1441
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1288  CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA  1347

Query  1442  TGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTCACTGATGTGATCGCAGA  1501
              ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1348  CGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTTACTGATGTGATCGCAGA  1407

Query  1502  GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGA  1561
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1408  GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGAAAGGGTGGAGAAAGA  1467

Query  1562  AAAGGAAAAATTCATCTCCGACTTCTCCAAAGAGGATTACGATGACATTGTTGGAGGATG  1621
             ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1468  AAAGGAAGAATTCATATCCGACTTCTCCAAAGAGGATTACGATGATATTGTTGGAGGATG  1527

Query  1622  GAAGTCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA  1681
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1528  GAAGGCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA  1587

Query  1682  CAAGAATTAAGCAAATCGAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTGTTCA  1741
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1588  CAAGAATTAAGCAAATCAAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTCTTCA  1647

Query  1742  ATAAAAATGTCATTTCCGCTAGGTGATGATATATGCCTGTAGTGTGTTATGTGGACTTGT  1801
             |||||||||||||||||||||||||||||| ||||  ||  |      |      |||||
Sbjct  1648  ATAAAAATGTCATTTCCGCTAGGTGATGAT-TATG--TG--G------A------CTTGT  1690

Query  1802  TGAGTGGTGTTAAATCTTGTTTCCCTTATGTGATATGTAAACCGAATTATGTTTGGTCTT  1861
             |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||
Sbjct  1691  TGAGTGGTGTTAAATCTC-TT-CC-TTATGTGATATGTAAACCGAATTATGTTTGGTCTT  1747


> Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1
Length=1974

 Score = 1611 bits (872),  Expect = 0.0
 Identities = 1381/1623 (85%), Gaps = 49/1623 (3%)
 Strand=Plus/Plus

Query  95    CAACCGCAGATCACGAAGCTTCTCTAGATCCAGACTCGCCGTCGAAGGCCACTGAATTAC  154
             ||| || |||||| | |||||||||||||||||||||||||| |||||||| |||| | |
Sbjct  83    CAATCGTAGATCAAGGAGCTTCTCTAGATCCAGACTCGCCGTTGAAGGCCATTGAAAT-C  141

Query  155   TCTC-TC-C-CCTCTC-TTGGCAGATCTTCTTCTTCGTT-T---TTTCCCGACAAACGAC  206
             || | || |   |||| ||  |  ||| |||||||| || |   ||| |||    |||||
Sbjct  142   TCCCTTCACATTTCTCTTTCTC-TATCGTCTTCTTCCTTCTGAGTTTTCCG----ACGAC  196

Query  207   ATTTCC-GAAATGGCTG-CATCGTACGAA-GAAGAGCGTGATATTCAGAAGAATTACTGG  263
              | |||  ||||||| | || | ||| || |||||| | ||||| || |||| |||||||
Sbjct  197   CTCTCCAAAAATGGC-GACACCTTAC-AAGGAAGAGAGAGATATCCAAAAGAGTTACTGG  254

Query  264   ATAGAGCATTC-CGCTGATCTGACTGTTGAAGCTATGATGCTTGACTCGAGAGCTTCTGA  322
             || ||||||||  | |||| |||||||||||||||||||||||||||| | |||||||||
Sbjct  255   ATGGAGCATTCTAG-TGATTTGACTGTTGAAGCTATGATGCTTGACTCCAAAGCTTCTGA  313

Query  323   TCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCTCCCTCCATATGAAGGCAAATC  382
             ||||||||| ||||||||||||||||||||||||||  |||| ||||||||||| |||||
Sbjct  314   TCTCGACAAAGAAGAACGTCCTGAGGTACTCTCTTTAATCCCACCATATGAAGGGAAATC  373

Query  383   AGTG-TTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG  441
              ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  374   TGTGCTT-GAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG  432

Query  442   GTGAACTCATTGCTCTTGACTTCATTGATAA-CGTTATCAAGAAGAATGAAAGTATCAAT  500
             ||||| | || ||||||||||| || || || ||  || ||||||||||||||| | |||
Sbjct  433   GTGAAGTTATCGCTCTTGACTTTATCGA-AAGCGCGATTAAGAAGAATGAAAGTGTTAAT  491

Query  501   GGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTACATCCCCTGACCTCAAGATC  560
             ||||||||||||||  |||||||||||||||||||||| ||||| |||||||| || |||
Sbjct  492   GGGCATTACAAGAACATCAAGTTTATGTGTGCTGATGTAACATCTCCTGACCTGAAAATC  551

Query  561   ACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCTCATGTATCTTTCTGACAAA  620
              ||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct  552   GCTGATGGATCTATTGACTTGATTTTCTCAAACTGGTTGCTCATGTATCTCTCTGATAAA  611

Query  621   GAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAAGGTTGGAGGATACATTTTC  680
             |||||||| ||| ||||||| || ||| | || ||| | |||   || ||||||||||||
Sbjct  612   GAGGTGGAACTTATGGCAGAGAGAATGATTGGATGGGTAAAGCCAGGGGGATACATTTTC  671

Query  681   TTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCGGAAA-TCCAACCCCACTCA  739
             ||| | |||||||||||||| ||||| |||||||| ||||| ||| || |||||||| ||
Sbjct  672   TTCAGAGAATCTTGCTTCCATCAATCTGGGGACAGCAAGCG-AAAGTCAAACCCCACCCA  730

Query  740   CTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAA-GAGTGTCAGACTCGGGATGCTG  798
             ||||||||||||| | |||||| | ||||| |||||| || || ||||| || |||| | 
Sbjct  731   CTACCGTGAACCCAGATTCTATACAAAGGT-TTTCAAAGAATGCCAGACACGTGATGGTT  789

Query  799   CTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCATTGGAGCTTATGTCAAGA  858
             |||| ||||||| ||||||||||||| | || ||||| |||||||| |||||||| ||||
Sbjct  790   CTGGCAATTCATATGAGCTCTCTATGGTTGGTTGCAAATGCATTGGGGCTTATGTGAAGA  849

Query  859   ACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGTCAGCTCAGAAAATGACA  918
             ||||||||||||| ||||||||||| ||||| ||||| || |||||||  || |||||||
Sbjct  850   ACAAGAAGAATCAAAATCAGATTTGCTGGATTTGGCAAAAAGTCAGCTTGGAGAATGACA  909

Query  919   GAGG-CTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAGTGGAATCCTACGCTAT  977
              ||| |||||| |||||| |||||||||| |||||||| |||||||| ||| | ||||||
Sbjct  910   -AGGACTTCCAGCGTTTCCTGGACAATGTTCAATACAAGTCCAGTGGGATCTTGCGCTAT  968

Query  978   GAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGAGACAACCAAAGAATTT  1037
             ||||||||||||||  |||| | |||||||||||||||| |||||||||| |||||||||
Sbjct  969   GAGCGTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGATTTGAGACAACTAAAGAATTT  1028

Query  1038  GTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGTTGGGTGTGGCATTGGT  1097
             |||| ||| ||| |||| ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct  1029  GTGGCGAAGATGGATCTTAAACCCGGACAGAAAGTCCTAGATGTTGGTTGTGGTATTGGT  1088

Query  1098  GGAGGTGACTTCTACATGGCTGAGAAGTTT-GATGTTCACGTTGTTGGTATCGATCTTTC  1156
             |||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| ||
Sbjct  1089  GGAGGTGACTTCTACATGGCTGAGAA-TTTCGATGTTCATGTTGTTGGAATCGATCTATC  1147

Query  1157  TGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAGCTGCTCGGTTGAGTT  1216
              |||||||||||||| ||||||||||| ||||| ||||||||||  ||||| || |||||
Sbjct  1148  GGTCAACATGATCTCATTCGCATTGGAGCGTGCCATTGGACTCAAATGCTCAGTCGAGTT  1207

Query  1217  TGAGGTTGCTGATTGCACCACAAAA-CACTACCCAGATAATTCGTTTGATGTCATTTACA  1275
             ||| || || || |||||||||||| || || || |||||||| || |||||||||||||
Sbjct  1208  TGAAGTCGCGGACTGCACCACAAAAACA-TATCCTGATAATTCCTTCGATGTCATTTACA  1266

Query  1276  GCCGTGACACTATTCTGCACATCCAAGACAAACCAGC-CTTGTTTAGGACTTTCTTCAAA  1334
             ||||||||||||| ||||||||||||||||| ||||| ||  || ||| | |||||||| 
Sbjct  1267  GCCGTGACACTATACTGCACATCCAAGACAAGCCAGCTCTA-TTCAGGGCATTCTTCAAG  1325

Query  1335  TGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAGCCCCAAAACTCCA  1394
             ||||||||||| || |||||||||||||||| |||||| || |||||  |  ||||||| 
Sbjct  1326  TGGCTTAAACCAGGCGGTAAAGTTCTCATCACCGACTATTGCAGAAGTGCTGAAACTCCG  1385

Query  1395  TCTGCTGAGTTTT-CAGAGTACATCAAACAGAGAGGATATGATCTCCATGACGTTCAAGC  1453
             ||| |||| |||  |||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct  1386  TCTCCTGA-TTTCGCAGAGTACATAAAACAAAGAGGATATGATCTCCATGATGTTCAAGC  1444

Query  1454  TTATGGACAGATGCTAAAAGACGCTGGCTTC-ACTGATGTGATCGCAGAGGACCGTACTG  1512
             ||| ||||||||||| |||||||| |||||  |  ||||||||||| |||||||||||||
Sbjct  1445  TTACGGACAGATGCTGAAAGACGCAGGCTTTGAG-GATGTGATCGCTGAGGACCGTACTG  1503

Query  1513  ATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGAAAAGGAAAAAT  1572
             |||||||| | |||||||| |  ||||||||||| |  |||||||||||||||||| |||
Sbjct  1504  ATCAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGAAAGAAAAGGAAGAAT  1563

Query  1573  TCATCTCCGACTTCTCCA-AAGAGGATTACGATGACATTGTTGGAGGATGGA-AGTCAAA  1630
             |||||  ||||||||| | ||||||||||| ||||||||||||||||||||| || ||||
Sbjct  1564  TCATCAGCGACTTCTC-AGAAGAGGATTACAATGACATTGTTGGAGGATGGACAG-CAAA  1621

Query  1631  GCTGGAGAGGTGTGCATC-GGATGAGCAGAAATGGGGACTT-TTCATCGCCAACAAGAAT  1688
             ||| || |||  |||||| || ||| || ||||||||| || ||||| ||||||||||| 
Sbjct  1622  GCTTGAAAGGACTGCATCTGG-TGAACAAAAATGGGGA-TTATTCATAGCCAACAAGAAG  1679

Query  1689  TAA  1691
             |||
Sbjct  1680  TAA  1682



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 71800111825


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5