BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G17998.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1 2671 0.0
Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1 1611 0.0
> Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1
Length=1781
Score = 2671 bits (1446), Expect = 0.0
Identities = 1691/1800 (94%), Gaps = 53/1800 (3%)
Strand=Plus/Plus
Query 62 GTGCGAATTGATGCAGCAGAGAGGACGATCCGTCAACCGCAGATCACGAAGCTTCTCTAG 121
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GTGTGAATTGATGCAGCAGAGAGGACGATCCGTCAATCGCAGATCACGAAGCTTCTCTAG 60
Query 122 ATCCAGACTCGCCGTCGAAGGCCACTGAATTACTCTCTCCCCTCTCTTGGCAGATCTTCT 181
|||||||||||| ||||||||||| ||||||||||||||| | |||||| ||
Sbjct 61 ATCCAGACTCGCTGTCGAAGGCCATTGAATTACTCTCTCC--------G-CAGATC--CT 109
Query 182 TCTTCGTTTTTTCCCGACAAACGACATTTCCGAAATGGCTGCATCGTACGAAGAAGAGCG 241
||||| || || || || | | | | | | | | | || | ||||| | ||
Sbjct 110 TCTTC-TT----CC-GA-AATGG-C-TG-C--A--TCG-T--A-CG-AGGAAGA-G--CG 147
Query 242 TGATATTCAGAAGAATTACTGGATAGAGCATTCCGCTGATCTGACTGTTGAAGCTATGAT 301
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 148 TGATATCCAGAAGAATTACTGGATAGAGCATTCGGCTGATTTGACTGTTGAAGCTATGAT 207
Query 302 GCTTGACTCGAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT 361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GCTTGACTCCAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT 267
Query 362 CCCTCCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG 421
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 CCCTTCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG 327
Query 422 TGAATTAGCTCAAAAGGCTGGTGAACTCATTGCTCTTGACTTCATTGATAACGTTATCAA 481
|||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 328 TGAATTGGCTCAAAAAGCTGGTGAACTCATTGCTCTTGACTTCATTGATAGTGTCATCAA 387
Query 482 GAAGAATGAAAGTATCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC 541
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GAAGAATGAAAGTGTCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC 447
Query 542 ATCCCCTGACCTCAAGATCACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCT 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 448 ATCCCCTGACCTCAAGATCACTGATGGATCCCTTGACTTGATTTTCTCCAACTGGCTGCT 507
Query 602 CATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAA 661
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 508 TATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCTGAAAGGATGGTTGGATGGATCAA 567
Query 662 GGTTGGAGGATACATTTTCTTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCG 721
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 568 GGTTGGAGGATATATTTTCTTCCGTGAATCTTGCTTCCACCAATCCGGGGACAGTAAGCG 627
Query 722 GAAATCCAACCCCACTCACTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAAGAGTG 781
|||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 628 GAAATCCAACCCGACTCACTACCGTGAACCTCGTTTCTATAGCAAGGTCTTTCAAGAATG 687
Query 782 TCAGACTCGGGATGCTGCTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT 841
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 688 TCAGACTCGGGATGCTGCTGGGAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT 747
Query 842 TGGAGCTTATGTCAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT 901
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TGGAGCTTATGTAAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT 807
Query 902 CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAG 961
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 808 CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTTCAATACAAATCCAG 867
Query 962 TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA 927
Query 1022 GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 928 GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTGTTAGATGT 987
Query 1082 TGGGTGTGGCATTGGTGGAGGTGACTTCTACATGGCTGAGAAGTTTGATGTTCACGTTGT 1141
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 988 TGGGTGTGGCATTGGTGGAGGTGACTTTTATATGGCTGAGAAGTTTGATGTTCATGTTGT 1047
Query 1142 TGGTATCGATCTTTCTGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAG 1201
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1048 TGGTATCGATCTCTCTGTCAACATGATCTCTTTCGCGTTGGAACGTGCTATTGGACTCAA 1107
Query 1202 CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACCACAAAACACTACCCAGATAATTCGTT 1261
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1108 CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACTACAAAACACTACCCAGATAATTCATT 1167
Query 1262 TGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG 1227
Query 1322 GACTTTCTTCAAATGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG 1381
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GACTTTCTTCAAGTGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG 1287
Query 1382 CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA 1347
Query 1442 TGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTCACTGATGTGATCGCAGA 1501
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1348 CGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTTACTGATGTGATCGCAGA 1407
Query 1502 GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGA 1561
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1408 GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGAAAGGGTGGAGAAAGA 1467
Query 1562 AAAGGAAAAATTCATCTCCGACTTCTCCAAAGAGGATTACGATGACATTGTTGGAGGATG 1621
||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1468 AAAGGAAGAATTCATATCCGACTTCTCCAAAGAGGATTACGATGATATTGTTGGAGGATG 1527
Query 1622 GAAGTCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA 1681
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 GAAGGCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA 1587
Query 1682 CAAGAATTAAGCAAATCGAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTGTTCA 1741
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1588 CAAGAATTAAGCAAATCAAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTCTTCA 1647
Query 1742 ATAAAAATGTCATTTCCGCTAGGTGATGATATATGCCTGTAGTGTGTTATGTGGACTTGT 1801
|||||||||||||||||||||||||||||| |||| || | | |||||
Sbjct 1648 ATAAAAATGTCATTTCCGCTAGGTGATGAT-TATG--TG--G------A------CTTGT 1690
Query 1802 TGAGTGGTGTTAAATCTTGTTTCCCTTATGTGATATGTAAACCGAATTATGTTTGGTCTT 1861
||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1691 TGAGTGGTGTTAAATCTC-TT-CC-TTATGTGATATGTAAACCGAATTATGTTTGGTCTT 1747
> Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1
Length=1974
Score = 1611 bits (872), Expect = 0.0
Identities = 1381/1623 (85%), Gaps = 49/1623 (3%)
Strand=Plus/Plus
Query 95 CAACCGCAGATCACGAAGCTTCTCTAGATCCAGACTCGCCGTCGAAGGCCACTGAATTAC 154
||| || |||||| | |||||||||||||||||||||||||| |||||||| |||| | |
Sbjct 83 CAATCGTAGATCAAGGAGCTTCTCTAGATCCAGACTCGCCGTTGAAGGCCATTGAAAT-C 141
Query 155 TCTC-TC-C-CCTCTC-TTGGCAGATCTTCTTCTTCGTT-T---TTTCCCGACAAACGAC 206
|| | || | |||| || | ||| |||||||| || | ||| ||| |||||
Sbjct 142 TCCCTTCACATTTCTCTTTCTC-TATCGTCTTCTTCCTTCTGAGTTTTCCG----ACGAC 196
Query 207 ATTTCC-GAAATGGCTG-CATCGTACGAA-GAAGAGCGTGATATTCAGAAGAATTACTGG 263
| ||| ||||||| | || | ||| || |||||| | ||||| || |||| |||||||
Sbjct 197 CTCTCCAAAAATGGC-GACACCTTAC-AAGGAAGAGAGAGATATCCAAAAGAGTTACTGG 254
Query 264 ATAGAGCATTC-CGCTGATCTGACTGTTGAAGCTATGATGCTTGACTCGAGAGCTTCTGA 322
|| |||||||| | |||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 255 ATGGAGCATTCTAG-TGATTTGACTGTTGAAGCTATGATGCTTGACTCCAAAGCTTCTGA 313
Query 323 TCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCTCCCTCCATATGAAGGCAAATC 382
||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 314 TCTCGACAAAGAAGAACGTCCTGAGGTACTCTCTTTAATCCCACCATATGAAGGGAAATC 373
Query 383 AGTG-TTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG 441
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGTGCTT-GAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG 432
Query 442 GTGAACTCATTGCTCTTGACTTCATTGATAA-CGTTATCAAGAAGAATGAAAGTATCAAT 500
||||| | || ||||||||||| || || || || || ||||||||||||||| | |||
Sbjct 433 GTGAAGTTATCGCTCTTGACTTTATCGA-AAGCGCGATTAAGAAGAATGAAAGTGTTAAT 491
Query 501 GGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTACATCCCCTGACCTCAAGATC 560
|||||||||||||| |||||||||||||||||||||| ||||| |||||||| || |||
Sbjct 492 GGGCATTACAAGAACATCAAGTTTATGTGTGCTGATGTAACATCTCCTGACCTGAAAATC 551
Query 561 ACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCTCATGTATCTTTCTGACAAA 620
||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct 552 GCTGATGGATCTATTGACTTGATTTTCTCAAACTGGTTGCTCATGTATCTCTCTGATAAA 611
Query 621 GAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAAGGTTGGAGGATACATTTTC 680
|||||||| ||| ||||||| || ||| | || ||| | ||| || ||||||||||||
Sbjct 612 GAGGTGGAACTTATGGCAGAGAGAATGATTGGATGGGTAAAGCCAGGGGGATACATTTTC 671
Query 681 TTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCGGAAA-TCCAACCCCACTCA 739
||| | |||||||||||||| ||||| |||||||| ||||| ||| || |||||||| ||
Sbjct 672 TTCAGAGAATCTTGCTTCCATCAATCTGGGGACAGCAAGCG-AAAGTCAAACCCCACCCA 730
Query 740 CTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAA-GAGTGTCAGACTCGGGATGCTG 798
||||||||||||| | |||||| | ||||| |||||| || || ||||| || |||| |
Sbjct 731 CTACCGTGAACCCAGATTCTATACAAAGGT-TTTCAAAGAATGCCAGACACGTGATGGTT 789
Query 799 CTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCATTGGAGCTTATGTCAAGA 858
|||| ||||||| ||||||||||||| | || ||||| |||||||| |||||||| ||||
Sbjct 790 CTGGCAATTCATATGAGCTCTCTATGGTTGGTTGCAAATGCATTGGGGCTTATGTGAAGA 849
Query 859 ACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGTCAGCTCAGAAAATGACA 918
||||||||||||| ||||||||||| ||||| ||||| || ||||||| || |||||||
Sbjct 850 ACAAGAAGAATCAAAATCAGATTTGCTGGATTTGGCAAAAAGTCAGCTTGGAGAATGACA 909
Query 919 GAGG-CTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAGTGGAATCCTACGCTAT 977
||| |||||| |||||| |||||||||| |||||||| |||||||| ||| | ||||||
Sbjct 910 -AGGACTTCCAGCGTTTCCTGGACAATGTTCAATACAAGTCCAGTGGGATCTTGCGCTAT 968
Query 978 GAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGAGACAACCAAAGAATTT 1037
|||||||||||||| |||| | |||||||||||||||| |||||||||| |||||||||
Sbjct 969 GAGCGTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGATTTGAGACAACTAAAGAATTT 1028
Query 1038 GTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGTTGGGTGTGGCATTGGT 1097
|||| ||| ||| |||| ||||| |||||||||||| |||||||||| ||||| ||||||
Sbjct 1029 GTGGCGAAGATGGATCTTAAACCCGGACAGAAAGTCCTAGATGTTGGTTGTGGTATTGGT 1088
Query 1098 GGAGGTGACTTCTACATGGCTGAGAAGTTT-GATGTTCACGTTGTTGGTATCGATCTTTC 1156
|||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| ||
Sbjct 1089 GGAGGTGACTTCTACATGGCTGAGAA-TTTCGATGTTCATGTTGTTGGAATCGATCTATC 1147
Query 1157 TGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAGCTGCTCGGTTGAGTT 1216
|||||||||||||| ||||||||||| ||||| |||||||||| ||||| || |||||
Sbjct 1148 GGTCAACATGATCTCATTCGCATTGGAGCGTGCCATTGGACTCAAATGCTCAGTCGAGTT 1207
Query 1217 TGAGGTTGCTGATTGCACCACAAAA-CACTACCCAGATAATTCGTTTGATGTCATTTACA 1275
||| || || || |||||||||||| || || || |||||||| || |||||||||||||
Sbjct 1208 TGAAGTCGCGGACTGCACCACAAAAACA-TATCCTGATAATTCCTTCGATGTCATTTACA 1266
Query 1276 GCCGTGACACTATTCTGCACATCCAAGACAAACCAGC-CTTGTTTAGGACTTTCTTCAAA 1334
||||||||||||| ||||||||||||||||| ||||| || || ||| | ||||||||
Sbjct 1267 GCCGTGACACTATACTGCACATCCAAGACAAGCCAGCTCTA-TTCAGGGCATTCTTCAAG 1325
Query 1335 TGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAGCCCCAAAACTCCA 1394
||||||||||| || |||||||||||||||| |||||| || ||||| | |||||||
Sbjct 1326 TGGCTTAAACCAGGCGGTAAAGTTCTCATCACCGACTATTGCAGAAGTGCTGAAACTCCG 1385
Query 1395 TCTGCTGAGTTTT-CAGAGTACATCAAACAGAGAGGATATGATCTCCATGACGTTCAAGC 1453
||| |||| ||| |||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1386 TCTCCTGA-TTTCGCAGAGTACATAAAACAAAGAGGATATGATCTCCATGATGTTCAAGC 1444
Query 1454 TTATGGACAGATGCTAAAAGACGCTGGCTTC-ACTGATGTGATCGCAGAGGACCGTACTG 1512
||| ||||||||||| |||||||| ||||| | ||||||||||| |||||||||||||
Sbjct 1445 TTACGGACAGATGCTGAAAGACGCAGGCTTTGAG-GATGTGATCGCTGAGGACCGTACTG 1503
Query 1513 ATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGAAAAGGAAAAAT 1572
|||||||| | |||||||| | ||||||||||| | |||||||||||||||||| |||
Sbjct 1504 ATCAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGAAAGAAAAGGAAGAAT 1563
Query 1573 TCATCTCCGACTTCTCCA-AAGAGGATTACGATGACATTGTTGGAGGATGGA-AGTCAAA 1630
||||| ||||||||| | ||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1564 TCATCAGCGACTTCTC-AGAAGAGGATTACAATGACATTGTTGGAGGATGGACAG-CAAA 1621
Query 1631 GCTGGAGAGGTGTGCATC-GGATGAGCAGAAATGGGGACTT-TTCATCGCCAACAAGAAT 1688
||| || ||| |||||| || ||| || ||||||||| || ||||| |||||||||||
Sbjct 1622 GCTTGAAAGGACTGCATCTGG-TGAACAAAAATGGGGA-TTATTCATAGCCAACAAGAAG 1679
Query 1689 TAA 1691
|||
Sbjct 1680 TAA 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5