BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G17998.1 Length=1911 Score E Sequences producing significant alignments: (Bits) Value Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1 2671 0.0 Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1 1611 0.0 > Ahg479286 jgi|Araly1|479286|fgenesh2_kg.3__1987__AT3G18000.1 Length=1781 Score = 2671 bits (1446), Expect = 0.0 Identities = 1691/1800 (94%), Gaps = 53/1800 (3%) Strand=Plus/Plus Query 62 GTGCGAATTGATGCAGCAGAGAGGACGATCCGTCAACCGCAGATCACGAAGCTTCTCTAG 121 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GTGTGAATTGATGCAGCAGAGAGGACGATCCGTCAATCGCAGATCACGAAGCTTCTCTAG 60 Query 122 ATCCAGACTCGCCGTCGAAGGCCACTGAATTACTCTCTCCCCTCTCTTGGCAGATCTTCT 181 |||||||||||| ||||||||||| ||||||||||||||| | |||||| || Sbjct 61 ATCCAGACTCGCTGTCGAAGGCCATTGAATTACTCTCTCC--------G-CAGATC--CT 109 Query 182 TCTTCGTTTTTTCCCGACAAACGACATTTCCGAAATGGCTGCATCGTACGAAGAAGAGCG 241 ||||| || || || || | | | | | | | | | || | ||||| | || Sbjct 110 TCTTC-TT----CC-GA-AATGG-C-TG-C--A--TCG-T--A-CG-AGGAAGA-G--CG 147 Query 242 TGATATTCAGAAGAATTACTGGATAGAGCATTCCGCTGATCTGACTGTTGAAGCTATGAT 301 |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 148 TGATATCCAGAAGAATTACTGGATAGAGCATTCGGCTGATTTGACTGTTGAAGCTATGAT 207 Query 302 GCTTGACTCGAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT 361 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 GCTTGACTCCAGAGCTTCTGATCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCT 267 Query 362 CCCTCCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG 421 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 CCCTTCATATGAAGGCAAATCAGTGTTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGG 327 Query 422 TGAATTAGCTCAAAAGGCTGGTGAACTCATTGCTCTTGACTTCATTGATAACGTTATCAA 481 |||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct 328 TGAATTGGCTCAAAAAGCTGGTGAACTCATTGCTCTTGACTTCATTGATAGTGTCATCAA 387 Query 482 GAAGAATGAAAGTATCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC 541 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 388 GAAGAATGAAAGTGTCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTAC 447 Query 542 ATCCCCTGACCTCAAGATCACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCT 601 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 448 ATCCCCTGACCTCAAGATCACTGATGGATCCCTTGACTTGATTTTCTCCAACTGGCTGCT 507 Query 602 CATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAA 661 ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 508 TATGTATCTTTCTGACAAAGAGGTGGAGCTTTTGGCTGAAAGGATGGTTGGATGGATCAA 567 Query 662 GGTTGGAGGATACATTTTCTTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCG 721 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 568 GGTTGGAGGATATATTTTCTTCCGTGAATCTTGCTTCCACCAATCCGGGGACAGTAAGCG 627 Query 722 GAAATCCAACCCCACTCACTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAAGAGTG 781 |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| || Sbjct 628 GAAATCCAACCCGACTCACTACCGTGAACCTCGTTTCTATAGCAAGGTCTTTCAAGAATG 687 Query 782 TCAGACTCGGGATGCTGCTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT 841 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 688 TCAGACTCGGGATGCTGCTGGGAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCAT 747 Query 842 TGGAGCTTATGTCAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT 901 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 748 TGGAGCTTATGTAAAGAACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGT 807 Query 902 CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAG 961 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 808 CAGCTCAGAAAATGACAGAGGCTTCCAACGTTTCTTGGACAATGTTCAATACAAATCCAG 867 Query 962 TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA 1021 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 868 TGGAATCCTACGCTATGAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGA 927 Query 1022 GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGT 1081 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 928 GACAACCAAAGAATTTGTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTGTTAGATGT 987 Query 1082 TGGGTGTGGCATTGGTGGAGGTGACTTCTACATGGCTGAGAAGTTTGATGTTCACGTTGT 1141 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 988 TGGGTGTGGCATTGGTGGAGGTGACTTTTATATGGCTGAGAAGTTTGATGTTCATGTTGT 1047 Query 1142 TGGTATCGATCTTTCTGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAG 1201 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1048 TGGTATCGATCTCTCTGTCAACATGATCTCTTTCGCGTTGGAACGTGCTATTGGACTCAA 1107 Query 1202 CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACCACAAAACACTACCCAGATAATTCGTT 1261 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1108 CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACTACAAAACACTACCCAGATAATTCATT 1167 Query 1262 TGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG 1321 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 CGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAGACAAACCAGCCTTGTTTAG 1227 Query 1322 GACTTTCTTCAAATGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG 1381 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 GACTTTCTTCAAGTGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAG 1287 Query 1382 CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA 1441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 CCCCAAAACTCCATCTGCTGAGTTTTCAGAGTACATCAAACAGAGAGGATATGATCTCCA 1347 Query 1442 TGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTCACTGATGTGATCGCAGA 1501 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1348 CGACGTTCAAGCTTATGGACAGATGCTAAAAGACGCTGGCTTTACTGATGTGATCGCAGA 1407 Query 1502 GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGA 1561 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1408 GGACCGTACTGATCAGTTTATGCAAGTCCTGAAACGTGAATTAGAAAGGGTGGAGAAAGA 1467 Query 1562 AAAGGAAAAATTCATCTCCGACTTCTCCAAAGAGGATTACGATGACATTGTTGGAGGATG 1621 ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1468 AAAGGAAGAATTCATATCCGACTTCTCCAAAGAGGATTACGATGATATTGTTGGAGGATG 1527 Query 1622 GAAGTCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA 1681 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 GAAGGCAAAGCTGGAGAGGTGTGCATCGGATGAGCAGAAATGGGGACTTTTCATCGCCAA 1587 Query 1682 CAAGAATTAAGCAAATCGAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTGTTCA 1741 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1588 CAAGAATTAAGCAAATCAAAATCTACTACTTCTATGTTTTCTTCTTTCTTTGTTTCTTCA 1647 Query 1742 ATAAAAATGTCATTTCCGCTAGGTGATGATATATGCCTGTAGTGTGTTATGTGGACTTGT 1801 |||||||||||||||||||||||||||||| |||| || | | ||||| Sbjct 1648 ATAAAAATGTCATTTCCGCTAGGTGATGAT-TATG--TG--G------A------CTTGT 1690 Query 1802 TGAGTGGTGTTAAATCTTGTTTCCCTTATGTGATATGTAAACCGAATTATGTTTGGTCTT 1861 ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 1691 TGAGTGGTGTTAAATCTC-TT-CC-TTATGTGATATGTAAACCGAATTATGTTTGGTCTT 1747 > Ahg473996 jgi|Araly1|473996|fgenesh2_kg.1__3950__AT1G48598.1 Length=1974 Score = 1611 bits (872), Expect = 0.0 Identities = 1381/1623 (85%), Gaps = 49/1623 (3%) Strand=Plus/Plus Query 95 CAACCGCAGATCACGAAGCTTCTCTAGATCCAGACTCGCCGTCGAAGGCCACTGAATTAC 154 ||| || |||||| | |||||||||||||||||||||||||| |||||||| |||| | | Sbjct 83 CAATCGTAGATCAAGGAGCTTCTCTAGATCCAGACTCGCCGTTGAAGGCCATTGAAAT-C 141 Query 155 TCTC-TC-C-CCTCTC-TTGGCAGATCTTCTTCTTCGTT-T---TTTCCCGACAAACGAC 206 || | || | |||| || | ||| |||||||| || | ||| ||| ||||| Sbjct 142 TCCCTTCACATTTCTCTTTCTC-TATCGTCTTCTTCCTTCTGAGTTTTCCG----ACGAC 196 Query 207 ATTTCC-GAAATGGCTG-CATCGTACGAA-GAAGAGCGTGATATTCAGAAGAATTACTGG 263 | ||| ||||||| | || | ||| || |||||| | ||||| || |||| ||||||| Sbjct 197 CTCTCCAAAAATGGC-GACACCTTAC-AAGGAAGAGAGAGATATCCAAAAGAGTTACTGG 254 Query 264 ATAGAGCATTC-CGCTGATCTGACTGTTGAAGCTATGATGCTTGACTCGAGAGCTTCTGA 322 || |||||||| | |||| |||||||||||||||||||||||||||| | ||||||||| Sbjct 255 ATGGAGCATTCTAG-TGATTTGACTGTTGAAGCTATGATGCTTGACTCCAAAGCTTCTGA 313 Query 323 TCTCGACAAGGAAGAACGTCCTGAGGTACTCTCTTTGCTCCCTCCATATGAAGGCAAATC 382 ||||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||| Sbjct 314 TCTCGACAAAGAAGAACGTCCTGAGGTACTCTCTTTAATCCCACCATATGAAGGGAAATC 373 Query 383 AGTG-TTGGAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG 441 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TGTGCTT-GAACTTGGAGCTGGTATTGGTCGTTTCACTGGTGAATTAGCTCAAAAGGCTG 432 Query 442 GTGAACTCATTGCTCTTGACTTCATTGATAA-CGTTATCAAGAAGAATGAAAGTATCAAT 500 ||||| | || ||||||||||| || || || || || ||||||||||||||| | ||| Sbjct 433 GTGAAGTTATCGCTCTTGACTTTATCGA-AAGCGCGATTAAGAAGAATGAAAGTGTTAAT 491 Query 501 GGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTACATCCCCTGACCTCAAGATC 560 |||||||||||||| |||||||||||||||||||||| ||||| |||||||| || ||| Sbjct 492 GGGCATTACAAGAACATCAAGTTTATGTGTGCTGATGTAACATCTCCTGACCTGAAAATC 551 Query 561 ACTGATGGATCTCTTGACTTGATTTTCTCCAACTGGCTGCTCATGTATCTTTCTGACAAA 620 ||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| Sbjct 552 GCTGATGGATCTATTGACTTGATTTTCTCAAACTGGTTGCTCATGTATCTCTCTGATAAA 611 Query 621 GAGGTGGAGCTTTTGGCAGAAAGGATGGTCGGTTGGATCAAGGTTGGAGGATACATTTTC 680 |||||||| ||| ||||||| || ||| | || ||| | ||| || |||||||||||| Sbjct 612 GAGGTGGAACTTATGGCAGAGAGAATGATTGGATGGGTAAAGCCAGGGGGATACATTTTC 671 Query 681 TTCCGTGAATCTTGCTTCCACCAATCAGGGGACAGTAAGCGGAAA-TCCAACCCCACTCA 739 ||| | |||||||||||||| ||||| |||||||| ||||| ||| || |||||||| || Sbjct 672 TTCAGAGAATCTTGCTTCCATCAATCTGGGGACAGCAAGCG-AAAGTCAAACCCCACCCA 730 Query 740 CTACCGTGAACCCCGTTTCTATTCCAAGGTCTTTCAA-GAGTGTCAGACTCGGGATGCTG 798 ||||||||||||| | |||||| | ||||| |||||| || || ||||| || |||| | Sbjct 731 CTACCGTGAACCCAGATTCTATACAAAGGT-TTTCAAAGAATGCCAGACACGTGATGGTT 789 Query 799 CTGGAAATTCATTTGAGCTCTCTATGATCGGATGCAAGTGCATTGGAGCTTATGTCAAGA 858 |||| ||||||| ||||||||||||| | || ||||| |||||||| |||||||| |||| Sbjct 790 CTGGCAATTCATATGAGCTCTCTATGGTTGGTTGCAAATGCATTGGGGCTTATGTGAAGA 849 Query 859 ACAAGAAGAATCAGAATCAGATTTGTTGGATATGGCAGAAGGTCAGCTCAGAAAATGACA 918 ||||||||||||| ||||||||||| ||||| ||||| || ||||||| || ||||||| Sbjct 850 ACAAGAAGAATCAAAATCAGATTTGCTGGATTTGGCAAAAAGTCAGCTTGGAGAATGACA 909 Query 919 GAGG-CTTCCAACGTTTCTTGGACAATGTCCAATACAAATCCAGTGGAATCCTACGCTAT 977 ||| |||||| |||||| |||||||||| |||||||| |||||||| ||| | |||||| Sbjct 910 -AGGACTTCCAGCGTTTCCTGGACAATGTTCAATACAAGTCCAGTGGGATCTTGCGCTAT 968 Query 978 GAGCGTGTCTTTGGCCAAGGGTTTGTGAGCACTGGTGGACTTGAGACAACCAAAGAATTT 1037 |||||||||||||| |||| | |||||||||||||||| |||||||||| ||||||||| Sbjct 969 GAGCGTGTCTTTGGGGAAGGATATGTGAGCACTGGTGGATTTGAGACAACTAAAGAATTT 1028 Query 1038 GTGGAGAAAATGAATCTGAAACCAGGACAGAAAGTCTTAGATGTTGGGTGTGGCATTGGT 1097 |||| ||| ||| |||| ||||| |||||||||||| |||||||||| ||||| |||||| Sbjct 1029 GTGGCGAAGATGGATCTTAAACCCGGACAGAAAGTCCTAGATGTTGGTTGTGGTATTGGT 1088 Query 1098 GGAGGTGACTTCTACATGGCTGAGAAGTTT-GATGTTCACGTTGTTGGTATCGATCTTTC 1156 |||||||||||||||||||||||||| ||| |||||||| |||||||| |||||||| || Sbjct 1089 GGAGGTGACTTCTACATGGCTGAGAA-TTTCGATGTTCATGTTGTTGGAATCGATCTATC 1147 Query 1157 TGTCAACATGATCTCTTTCGCATTGGAACGTGCTATTGGACTCAGCTGCTCGGTTGAGTT 1216 |||||||||||||| ||||||||||| ||||| |||||||||| ||||| || ||||| Sbjct 1148 GGTCAACATGATCTCATTCGCATTGGAGCGTGCCATTGGACTCAAATGCTCAGTCGAGTT 1207 Query 1217 TGAGGTTGCTGATTGCACCACAAAA-CACTACCCAGATAATTCGTTTGATGTCATTTACA 1275 ||| || || || |||||||||||| || || || |||||||| || ||||||||||||| Sbjct 1208 TGAAGTCGCGGACTGCACCACAAAAACA-TATCCTGATAATTCCTTCGATGTCATTTACA 1266 Query 1276 GCCGTGACACTATTCTGCACATCCAAGACAAACCAGC-CTTGTTTAGGACTTTCTTCAAA 1334 ||||||||||||| ||||||||||||||||| ||||| || || ||| | |||||||| Sbjct 1267 GCCGTGACACTATACTGCACATCCAAGACAAGCCAGCTCTA-TTCAGGGCATTCTTCAAG 1325 Query 1335 TGGCTTAAACCGGGAGGTAAAGTTCTCATCAGCGACTACTGTAGAAGCCCCAAAACTCCA 1394 ||||||||||| || |||||||||||||||| |||||| || ||||| | ||||||| Sbjct 1326 TGGCTTAAACCAGGCGGTAAAGTTCTCATCACCGACTATTGCAGAAGTGCTGAAACTCCG 1385 Query 1395 TCTGCTGAGTTTT-CAGAGTACATCAAACAGAGAGGATATGATCTCCATGACGTTCAAGC 1453 ||| |||| ||| |||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1386 TCTCCTGA-TTTCGCAGAGTACATAAAACAAAGAGGATATGATCTCCATGATGTTCAAGC 1444 Query 1454 TTATGGACAGATGCTAAAAGACGCTGGCTTC-ACTGATGTGATCGCAGAGGACCGTACTG 1512 ||| ||||||||||| |||||||| ||||| | ||||||||||| ||||||||||||| Sbjct 1445 TTACGGACAGATGCTGAAAGACGCAGGCTTTGAG-GATGTGATCGCTGAGGACCGTACTG 1503 Query 1513 ATCAGTTTATGCAAGTCCTGAAACGTGAATTAGACAGGGTGGAGAAAGAAAAGGAAAAAT 1572 |||||||| | |||||||| | ||||||||||| | |||||||||||||||||| ||| Sbjct 1504 ATCAGTTTGTACAAGTCCTCAGGCGTGAATTAGAAAAAGTGGAGAAAGAAAAGGAAGAAT 1563 Query 1573 TCATCTCCGACTTCTCCA-AAGAGGATTACGATGACATTGTTGGAGGATGGA-AGTCAAA 1630 ||||| ||||||||| | ||||||||||| ||||||||||||||||||||| || |||| Sbjct 1564 TCATCAGCGACTTCTC-AGAAGAGGATTACAATGACATTGTTGGAGGATGGACAG-CAAA 1621 Query 1631 GCTGGAGAGGTGTGCATC-GGATGAGCAGAAATGGGGACTT-TTCATCGCCAACAAGAAT 1688 ||| || ||| |||||| || ||| || ||||||||| || ||||| ||||||||||| Sbjct 1622 GCTTGAAAGGACTGCATCTGG-TGAACAAAAATGGGGA-TTATTCATAGCCAACAAGAAG 1679 Query 1689 TAA 1691 ||| Sbjct 1680 TAA 1682 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71800111825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5