BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G18140.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479304 jgi|Araly1|479304|fgenesh2_kg.3__2005__AT3G18140.1 1831 0.0
Ahg343760 jgi|Araly1|343760|fgenesh1_pg.C_scaffold_4000102 736 0.0
Ahg952511 jgi|Araly1|952511|scaffold_81400001.1 220 2e-56
> Ahg479304 jgi|Araly1|479304|fgenesh2_kg.3__2005__AT3G18140.1
Length=1197
Score = 1831 bits (991), Expect = 0.0
Identities = 1131/1199 (94%), Gaps = 7/1199 (1%)
Strand=Plus/Plus
Query 80 tttttGATCCTCAATCACCAAACCCTAGCTTGTTCTTCTGTTGATTATTTCGAAAAGGGG 139
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTTTTGATCCTCAATCAGGAAACCCTAGCTTGTTCTTCTGTTGATTATTTCGAAAAAGGG 60
Query 140 GTTTGTTTGTTTTCTGGGAATCAGCAAAAATCACGAAATGGTTGGTTTAATATTTCAATC 199
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 61 GTTTGTTTGGTTTCTGGGAATCAGCAAAAATCACGAAATGGTTGGTTCATTATTTCGATC 120
Query 200 GGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACGGCTAGCTATGA 259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 GGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACAGCTAGCTATGA 180
Query 260 TCACACCATCCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATCC 319
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCACACGATTCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATCC 240
Query 320 TGATTCGCATGTAAATAGGCTTGAGATAACCCCAGATAAGCATTATCTAGCTGCAGCTTG 379
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TGATTCGCATGTAAATAGGCTTGAGATAACCCCAGATAAGCGTTATCTAGCTGCAGCTTG 300
Query 380 CAATCCTCATATTCGACTCTTTGATGTCAATTCCAATAGTCCTCAACCTGTGATGACTTA 439
||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TAATCCTCATATACGGCTTTTTGATGTCAATTCCAACAGTCCTCAACCTGTGATGACTTA 360
Query 440 CGATTCACACACCAACAATGTTATGGCAGTAGGATTTCAATGTGATGCAAAATGGATGTA 499
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 361 TGATTCACACACCAACAATGTTATGGCAGTAGGATTCCAATGTGATGGGAAATGGATGTA 420
Query 500 TTCAGGATCAGAAGATGGCACAGTTAAGATCTGGGACTTAAGGGCTCCGGGTTGCCAAAA 559
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 421 TTCAGGATCAGAGGATGGCACAGTTAAGATCTGGGACTTGAGGGCTCCCGGTTGCCAAAA 480
Query 560 GGAGTATGAAAGTGTTGCAGCGGTTAATACAGTTGTTTTACACCCAAATCAGACTGAATT 619
|||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 481 GGAGTATGAAAGTGTTGCCGCAGTTAACACTGTTGTTTTACACCCAAATCAGACTGAATT 540
Query 620 GATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAATTCGTGTAG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAATTCGTGTAG 600
Query 680 CTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTAACTGTTATGTGGGATGG 739
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 601 TTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTGACGGTTATGTGGGATGG 660
Query 740 GACAATGGTAGTCGCTGCTAACAACCGTGGAACATGTTATGTATGGCGCTTGTTGCGTGG 799
|||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 TACAATGGTGGTTGCTGCTAACAACCGTGGAACATGTTATGTGTGGCGCTTGTTGCGTGG 720
Query 800 AAAACAGACAATGACAGAGTTTGAGCCCCTTCATAAGCTGCAAGCTCATAATGGCCACAT 859
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 AAAACAGACGATGACCGAGTTTGAACCCCTTCATAAGCTGCAAGCTCATAATGGCCACAT 780
Query 860 CCTTAAATGTCTCCTCTCTCCTGCAAACAAATATCTAGCGACTGCATCATCTGATAAAAC 919
||||||||| || ||||||||||||||||| |||||||| || | ||| |||||||||||
Sbjct 781 CCTTAAATGCCTTCTCTCTCCTGCAAACAAGTATCTAGCAACCGTATCGTCTGATAAAAC 840
Query 920 TGTCAAAATATGGAACGTCGATGGTTTTAAACTAGAGAAAGTTTTAACAGGACATCAAAG 979
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 CGTCAAAATATGGAACGTCGATGGTTTCAAACTAGAGAAAGTTTTAACAGGACATCAAAG 900
Query 980 ATGGGTTTGGGACTGCGTCTTCTCAGTGGATGGAGAATTTCTTGTAACAGCATCATCGGA 1039
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 901 ATGGGTCTGGGACTGCGTCTTCTCAGTGGATGGAGAATTTCTTGTTACCGCATCATCTGA 960
Query 1040 CATGACGGCTAGATTGTGGTCGATGCCAGCAGGCAAAGAAGTGAAAGTGTACCAAGGTCA 1099
|||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 961 CATGACGGCTAGATTGTGGTCGATGCCAGCGGGTAAAGAAGTGAAGGTATACCAAGGTCA 1020
Query 1100 TCACAAAGCCACTGTGTGCTGTGCACTTCACGATTAAAACCTTAATAAGAATCAA--A-G 1156
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || | |
Sbjct 1021 TCACAAAGCCACTGTGTGCTGTGCACTCCACGATTAAAACCTTT-TAAGAATTAATGAAG 1079
Query 1157 CTAAATTATGAACAAACTACGATTGTGTTATTTGTGTTTTAGTAAACTCTTGTACATTTC 1216
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 CTAAATTATGGACAAACTACGATTGTGTTATTTGTGTTTTAGAAAACTCTTGTACATTTT 1139
Query 1217 AATCGAATTCGTTCAAATTGCTCTT-ATGT-TCCCTCTCTGATCAAACATTTCTCAACT 1273
||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||
Sbjct 1140 AATCGAATTCGTTCAAATTGCTCTTTATGTCTCC-TCTGTGATCAAACATTTCTCAACT 1197
> Ahg343760 jgi|Araly1|343760|fgenesh1_pg.C_scaffold_4000102
Length=999
Score = 736 bits (398), Expect = 0.0
Identities = 520/579 (90%), Gaps = 8/579 (1%)
Strand=Plus/Plus
Query 552 TGCCAAAAGGAGTATGA-AAGTGTTGCAGCGGTTAATACAGTTGTTTTACACCCAAATCA 610
||||||| ||||| | | ||||||| || | |||| ||||| |||||||||||||||||
Sbjct 412 TGCCAAAGGGAGT-TTAGAAGTGTTTCACCAATTAACACAGTCGTTTTACACCCAAATCA 470
Query 611 GACTGAATTGATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAA 670
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| |
Sbjct 471 GACTGAATTGATATCTGGTGACCAAAACGGAAATATACGTGTGTGGGATCTCAGAGCAGA 530
Query 671 TTCGTGTAGCTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTAACTGTTAT 730
|| ||||||||||||||||||||||||||||| |||| || ||||||||||||| |||||
Sbjct 531 TTTGTGTAGCTGTGAACTGGTACCAGAAGTTGGTACACCTATACGGTCTTTAACGGTTAT 590
Query 731 GTGGGATGGGACAATGGTAGTCGCTGCTAAC-AACCGTGGAACATGTTATGTATGGCGCT 789
|||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||
Sbjct 591 GTGGGATGGGACAATGGTGGTTGCTGCTAACGAAC-GTGGAACATGTTATGTATGGCGCT 649
Query 790 -TGTTGCGTGGAAAACAGACAATGACAGAGTTTGAGCCCCTTCATAAGCTGCAAGCTCAT 848
| |||| |||| ||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 650 CT-TTGCAAGGAATACAAACGATGACGGAGTTTGAGCCCCTTCATAAGCTACAAGCTCAT 708
Query 849 AATGGCCACATCCTTAAATGTCTCCTCTCTCCTGCAAACAAATATCTAGCGACTGCATCA 908
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 709 AATGGCTACATCCTTAAATGTCTCCTCTCTCCTGGAAACAAATATCTAGCGACCGCATCA 768
Query 909 TCTGATAAAACTGTCAAAATATGGAACGTCGATGGTTTTAAACTAGAGAAAGTTTTAACA 968
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 769 TCTGATAAAACTGTCAAAATATGGAACGTTGATGGTTTCAAACTTGAGAAAGTTTTAACA 828
Query 969 GGACATCAAAGATGGGTTTGGGACTGCGTCTTCTCAGTGGA-TGGAGAATTTCTTGTAAC 1027
||||||| ||||||||| |||||||| | ||||||| ||| |||||||| |||||| ||
Sbjct 829 GGACATCGAAGATGGGTCTGGGACTGTGACTTCTCAA-GGAATGGAGAATATCTTGTTAC 887
Query 1028 AGCATCATCGGACATGACGGCTAGATTGTGGTCGATGCCAGCAGGCAAAGAAGTGAAAGT 1087
|||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 888 CGCATCATCTGACATGACGGCTAGATTGTGGTCGATGCCAGCGGGTAAAGAAGTGATGGT 947
Query 1088 GTACCAAGGTCATCACAAAGCCACTGTGTGCTGTGCACT 1126
|||||| | ||||| || |||||||||||| ||| ||||
Sbjct 948 GTACCATGCTCATCGCAGAGCCACTGTGTGTTGTACACT 986
Score = 281 bits (152), Expect = 7e-75
Identities = 262/312 (84%), Gaps = 19/312 (6%)
Strand=Plus/Plus
Query 238 TTCTTGCTACGGCTAGCTATGATCACACCATCCGATTCTGGGAAG-CCGAAACTGGT-CG 295
|||| || ||||| ||||||||||| ||||| ||||| ||||||| ||| ||| ||| |
Sbjct 35 TTCTCGCAACGGCGAGCTATGATCATACCATTCGATTATGGGAAGCCCG-AACCGGTAC- 92
Query 296 CTGTTACCGTACCATT-CAGTATCCTGAT-TCGCATGTAAATAGGCTTGAGATAACCCCA 353
|||||||| | | || | ||||||||| | |||||| ||||||||||||||||||||
Sbjct 93 CTGTTACCTTTCTTTTGC-CTATCCTGATAT-GCATGTGAATAGGCTTGAGATAACCCCT 150
Query 354 GATAAGCATTATCTAGCT-GCAGCTTGCAATCCTCATATTCGACTCTTTGATGTCAATTC 412
|||||| | | || | | ||||||||||||||||| || |||||||||||| |||||||
Sbjct 151 GATAAGGGTAAACTTG-TAGCAGCTTGCAATCCTCACATACGACTCTTTGATCTCAATTC 209
Query 413 CAATAG-TCCTCA---ACCTGTGATGACTTACGATTCACACACCAACAATGTTATGGCAG 468
| || | ||||| |||||||| ||||| || |||||||||||||||||||||||||
Sbjct 210 C-ATGGCCCCTCATTTACCTGTGAGGACTTTTGAATCACACACCAACAATGTTATGGCAG 268
Query 469 TAGGATTTCAATGTGA-TGCA-AAATGGATGTATTCAGGATCAGAAGATGGCACAGTTAA 526
||||||| |||| | | || | |||| |||||||||||||||||||||||||||||||||
Sbjct 269 TAGGATTCCAATAT-ACTGGACAAAT-GATGTATTCAGGATCAGAAGATGGCACAGTTAA 326
Query 527 GATCTGGGACTT 538
||||||||||||
Sbjct 327 GATCTGGGACTT 338
> Ahg952511 jgi|Araly1|952511|scaffold_81400001.1
Length=193
Score = 220 bits (119), Expect = 2e-56
Identities = 125/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199 CGGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACGGCTAGCTATG 258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CGGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACAGCTAGCTATG 60
Query 259 ATCACACCATCCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATC 318
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCACACGATTCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATC 120
Query 319 CTGATTCG 326
||||||||
Sbjct 121 CTGATTCG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5