BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18440.1 Length=2005 Score E Sequences producing significant alignments: (Bits) Value Ahg929724 jgi|Araly1|929724|scaffold_302181.1 2878 0.0 > Ahg929724 jgi|Araly1|929724|scaffold_302181.1 Length=1837 Score = 2878 bits (1558), Expect = 0.0 Identities = 1750/1843 (95%), Gaps = 11/1843 (1%) Strand=Plus/Plus Query 46 TCTTTGAGAAT-C-CGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATG-GAATA 102 ||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 TCTCTGAGAATCCGCGTCTAGTAATGGCGGCGAAGCAAGGTTCCTTCAGGCATGTG-ATA 59 Query 103 CTCGAGAAACGGGAGAGGCTTCTCTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 162 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 60 CTCGAGAAACGTGAAAGGCTTCTTTCCAATAATGGTTTCTCCGATTTCAGATTCACCGAC 119 Query 163 ATCGAATCTAACGATCTACTCGAAAACGAAAACTGTGGACGAAGAACACGGTTATGTTGC 222 |||||||| ||||||||||||||||||||||||| | | |||||||| ||||||||||| Sbjct 120 ATCGAATCGAACGATCTACTCGAAAACGAAAACTAT-G--GAAGAACAAGGTTATGTTGC 176 Query 223 TGTTGTTCGTGTGGTAATCTATCTGAGAAAATATCTGGAGTCTACGACGATGCTAAAGAT 282 ||||| |||||||| |||||||| |||||||| || ||||| ||| | |||||||||||| Sbjct 177 TGTTGCTCGTGTGGAAATCTATCAGAGAAAATCTCCGGAGTGTACCAAGATGCTAAAGAT 236 Query 283 GTAGCGAGGAAAGCTTGGGAGATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCT 342 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 237 GTAGCGAGGAAAGCTTGGGATATGGGAGTATCTGATCCGAGAAAGATCGTCTTCTCCGCG 296 Query 343 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 AAGATTGGTCTTGCTCTGACGATTGTTGCGCTTTTGATTTTTTATCAGGAACCTAATCCG 356 Query 403 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACC 462 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GATCTTAGTCGATACTCTGTTTGGGCTATTCTTACTGTCGTCGTCGTCTTCGAATTCACG 416 Query 463 ATCGGAGCAACTCTAAGCAAAGGGTTTAATAGAGCGCTTGGGACATTATCAGCTGGAGGT 522 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 417 ATCGGAGCAACTCTAAGCAAAGGGTTTAATCGAGCGCTTGGGACATTATCAGCTGGAGGT 476 Query 523 CTTGCTCTTGGAATGGCTGAGCTTTCCACTTTATTCGGTGACTGGGAAGAGATCTTCTGC 582 |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 477 CTTGCTCTTGGAATGGCTGAGCTTTCGACACTATTCGGTGACTGGGAAGAGCTCTTCTGC 536 Query 583 ACTCTTAGTATCTTCTGCATTGGGTTTCTTGCAACTTTCATGAAACTATACCCGTCGATG 642 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 537 ACTCTTAGTATCTTCTGCATTGGGTTTCTCGCAACTTTCATGAAATTATACCCGTCGATG 596 Query 643 AAAGCTTATGAATACGGGTTCCGGGTTTTCTTGCTTACGTATTGCTACATTCTGATTTCT 702 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 597 AAAGCTTATGAATACGGGTTCAGGGTTTTCTTGCTTACGTATTGCTATATTCTGATTTCT 656 Query 703 GGGTTCAGAACTGGGCAGTTTATAGAAGTGGCTATCTCTCGGTTTCTGCTTATAGCTCTT 762 |||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||| Sbjct 657 GGGTTCAGAACTGGGCAGTTCATACAAGTGGCTATTTCCCGGTTTCTGCTTATAGCTCTT 716 Query 763 GGTGCTGGTGTTAGTTTAGGTGTTAATATGTTTATCTATCCTATATGGGCTGGAGAGGAT 822 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 717 GGTGCTGGTGTTAGTTTAGGTGTCAATATGTTTATTTATCCTATATGGGCTGGAGAGGAT 776 Query 823 CTTCATAACCTTGTCGTGAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 882 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 777 CTTCATAACCTTGTCGTCAAGAATTTTATGAATGTTGCGACTTCCCTTGAAGGTTGTGTG 836 Query 883 AATGGATATCTCCGCTGTCTTGAATACGAGAGAATCCCATCCAAAATCCTCACGTACCAA 942 || | ||| ||||||||| | |||||||||||||||||||||||||||||||| |||||| Sbjct 837 AACGAATACCTCCGCTGTGTCGAATACGAGAGAATCCCATCCAAAATCCTCACATACCAA 896 Query 943 GCTTCAGAGGATCCTGTTTACAAGGGTTATAGATCAGCTGTTGAGTCAACCAGCCAAGAA 1002 || |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| Sbjct 897 GCCTCAGAGGATCCTGTTTACAAGGGTTACAGATCAGCGGTTGAATCAACCAGCCAAGAA 956 Query 1003 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCACCACATGGACCATACAAGTCATTTAAC 1062 |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| Sbjct 957 GAGTCTCTGATGAGTTTCGCAATATGGGAGCCGCCTCATGGACGATACAAGTCATTTAAC 1016 Query 1063 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 TACCCATGGAAGAACTATGTCAAGCTCAGCGGCGCTCTCAAGCATTGTGCATTCACTGTC 1076 Query 1123 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAGAGGAACGGAGACAAGTT 1182 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1077 ATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCAAAGGAACGGAGACAAGTT 1136 Query 1183 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCTAAATTGTTAAGAGAGCTCGGT 1242 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1137 TTTCGGCAAGAACTTCAGAGAGTGGGCGTAGAAGGAGCCAAATTGTTACGAGAGCTCGGT 1196 Query 1243 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCAGTCGACCTTCTCTTTGAAGTACACCTA 1302 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1197 GAAAAGGTGAAGAAGATGGAGAAGCTAGGACCTGTCGACCTTCTCTTTGAAGTACACCTA 1256 Query 1303 GCTGCTGAAGAATTACAGCACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1362 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GCTGCCGAAGAATTACAGGACAAGATCGACAAGAAATCTTACCTTCTTGTCAATTCCGAA 1316 Query 1363 TGCTGGGAGATCGGAAACCGAGCCACCAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTC 1422 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1317 TGCTGGGAGATCGGAAACCGAGCCATAAAGGAATCAGAGCCTCAAGAACTGCTCTCCCTA 1376 Query 1423 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCCCTAAGC 1482 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1377 GAAGATTCAGATCCACCAGAAAACCACGCGCCTCCAATCTACGCCTTCAAATCTCTAAGC 1436 Query 1483 GAGGCAGTTCTAGAGATACCACCAAGCTGGGGCGAGAAGAATCACCGTGAAGC-GTTGAA 1541 |||||||||||||||||||| || |||||||| ||||||||||| ||| | || |||||| Sbjct 1437 GAGGCAGTTCTAGAGATACCGCCGAGCTGGGGAGAGAAGAATCATCGTCA-GCCGTTGAA 1495 Query 1542 CCATAGACCTACTTTCTCAAAACAGGTGTCATGGCCTGCACGGCTTGTACTTCCGCCGCA 1601 ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1496 CCATAGACCTACTCTCTCAAAACAGGTATCATGGCCTGCACGGCTTGTGCTTCCGCCGCA 1555 Query 1602 T-CTGGAGACGACTAACGGAGCTTCACCGTTGGTGGAGACAACAAAGACTTATGAAAGCG 1660 | | |||||| || ||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1556 TTC-GGAGACAACGAACGGAGCTTCACCGTTGGTGGATACGACAAAGACTTATGAAAGCG 1614 Query 1661 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 CGAGTGCATTGTCTCTCGCGACGTTCGCGTCTCTCCTCATTGAGTTCGTTGCTCGGTTGC 1674 Query 1721 AGAACGTGGTCGACGCGTTCAAGGAGTTAAGCCAGAAAGCGAATTTCAAGGAGCCGGAGA 1780 |||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||| Sbjct 1675 AGAACGTGGTCGACGCATTCGAGGAGTTGAGCCAGAAGGCGAATTTCAAGGAGCCCGAGA 1734 Query 1781 TTGTTACAACGGGGACTGATGTTGAATTCTCTGGTGAAAGAGTTGGACTTGGCCAGAAGA 1840 ||||||| |||| |||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 1735 TTGTTACGACGGCGACTGATGTTGAATTCTCGGGCGAAAGAGTCGGACTTGGCCAGAAGA 1794 Query 1841 TTCGTAGGTGTTTTGGGATGTAAGGTTTTTGTTTTTGCATCGG 1883 | ||| |||||||||| |||||||||||||||||||||||||| Sbjct 1795 TCCGTGGGTGTTTTGGTATGTAAGGTTTTTGTTTTTGCATCGG 1837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75380594855 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5