BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18610.1 Length=2098 Score E Sequences producing significant alignments: (Bits) Value Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1 1784 0.0 > Ahg479366 jgi|Araly1|479366|fgenesh2_kg.3__2067__AT3G18610.1 Length=1856 Score = 1784 bits (966), Expect = 0.0 Identities = 1255/1386 (91%), Gaps = 54/1386 (4%) Strand=Plus/Plus Query 715 GATGAATCTTCTTCAGATGAGGAAAC--CCCCGTTGTGAAGAAG-AAGCCAACAACAGTT 771 ||||| ||||||||||| |||||| | |||| || ||||||| || || | ||| Sbjct 502 GATGATTCTTCTTCAGACGAGGAATCTGCCCC--TGCGAAGAAGCAA-CC--C-GCAGCC 555 Query 772 GTTAAGGATGCCAAGGCAGAAAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGATGAA 831 ||||| || |||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 556 CTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615 Query 832 C-CAACACCTGCCAAGAAGCCAACAGTTGTTAAGAATGCT-AAACCAGCTGCAAAAGATT 889 | | |||||||||| ||||||||||||||||||||| | ||||||||||||||||||| Sbjct 616 CTC-ACACCTGCCATTAAGCCAACAGTTGTTAAGAAT-ATCAAACCAGCTGCAAAAGATT 673 Query 890 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACGA 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 674 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACAA 733 Query 950 AGAAGGCTAAAGTTTCAT---CAAAAACTTCTAAACAAGAAAGCTCTAGTGATGAATCTA 1006 |||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||| Sbjct 734 AGAAGGCTAAAGTTTCATTAACAAAAACATCTAAAAAAGAAAGCTCTAGTGAGGAATCTA 793 Query 1007 GTGATGAATCTGATAAGGAGGAGAGTAAAGATGAGAAAGTGACACCAAAGAAAAAGGATT 1066 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 794 GTGATGAATCTGATAAGGAGGAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGACT 853 Query 1067 CTGATGTTGAAATGGTGGATGCAGAGCAGAAATCTAATGCAAAGCAGCCGAAGACACC-T 1125 ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 854 CTGATATTGAAATGGTGGATGCAGAGCAGAAATCAAATGCAAAGCAGCCAAAGACACCAT 913 Query 1126 ACTAATCAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTATCAAATT 1185 ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 914 -CTACTGAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAAATT 972 Query 1186 GCGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTCGATGTTAGACTT 1245 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 973 GAGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTT 1032 Query 1246 TCTTCATTTGATGATGGGAGTTTTAAGGGATATGGGCATATTGAATTTGCTTCTCCAGAA 1305 ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 1033 TCTTCATATGATGATGGGACATTTAAGGGATATGGGCATGTTGAATTTGCTTCTCCAGAA 1092 Query 1306 GAAGCTCAGAAGGCATTGGAAATGAACGGTAAATTGTTACTAGGCCGCGATGTTCGTCTT 1365 ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| Sbjct 1093 GAAGCTCAGAAGGCATTGGAACTGAACGGTAAAATGTTACTAGGGCGCGATGTTCGGCTT 1152 Query 1366 GATCTTGCTAACGAGAGGGGTACTCCACGAAACAGCAATCCTGGTCGCAAAGGAGAAGGA 1425 ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 1153 GATCTTGCTAACGAGAGGGGT-CA--ACGAAACAGCAATTCTGGTCGCAAAGGAGAAGGA 1209 Query 1426 AGCCAAAGTCGAACGATTTACGTTAGAGGATTCAGTTCTTCTCTTGGCGAAGATGAAATC 1485 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1210 AGCCAAAGTCGAACGATTTTTGTTAGAGGATTCAATTCTTCTCTTGGCGAAGATGAAATC 1269 Query 1486 AAGAAAGAGTTGAGAAGTCATTTTAGCAAGTGTGGAGAGGTGACAAGGGTTCATGTTCCA 1545 ||||||||||||||||||| |||||| || || ||||||||||||||||||||||||||| Sbjct 1270 AAGAAAGAGTTGAGAAGTCTTTTTAGTAACTGCGGAGAGGTGACAAGGGTTCATGTTCCA 1329 Query 1546 ACAGATCGTGAGACTGGTGCTTCCAGGGGCTTTGCTTACATAGATTTGACGAGTGGATTC 1605 |||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||| Sbjct 1330 ACAGATCGTGAGACTGGTGCTTGCAGGGGGTTGGCTTACATAGATTTGACGAATGGATTC 1389 Query 1606 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGAGGGAACATACATGTGGAAGAG 1665 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1390 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGATGGAACATACATGTGGAAGAG 1449 Query 1666 TCTAGACCAAGAGATAGTGATGAGGGCCGTTCCTCAAACAGAGCACCTGCTAGAGGAGCA 1725 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 1450 TCTAGACCAAGAGATAGTGATGAGGGGCGTTCCTCAAACAGAGCACCTGGTAGAG---CA 1506 Query 1726 CCTCGTGGCCGTCACTCAGATAGAG---CACCTCGTGGAGGACGTTTCTCGGATAGAG-- 1780 |||||||| ||| |||| ||||||| |||||||||| |||||||| ||||||| Sbjct 1507 CCTCGTGGACGTTACTCGGATAGAGGAGCACCTCGTGGC---CGTTTCTCAGATAGAGGA 1563 Query 1781 -CACCACGTGGACGTCACTCAGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1839 |||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1564 GCACCTCGTGGCCGTTTCTCGGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1623 Query 1840 AGAGGACCCAGCAAACCAAGTGTAATGGAATCATC-CAAAGGGACGAAGACGGTCTTTAA 1898 |||||||||||||||||||||||||| |||||| | | | |||| ||||||||||||||| Sbjct 1624 AGAGGACCCAGCAAACCAAGTGTAATTGAATCAGCTCTA-GGGAAGAAGACGGTCTTTAA 1682 Query 1899 TGATGAAGAGTAGAAGAAAGCTGTTTTT----GGTTCTATCTTATAGTAGTAGAGCGTTT 1954 |||||||| |||||||| ||| ||||| |||||||||||||||||| | ||| Sbjct 1683 AGATGAAGACTAGAAGAA-GCTTTTTTTTTTTGGTTCTATCTTATAGTAG-----CTTTT 1736 Query 1955 TTGGCCTAGTTTCTTTTGTTTTCTGTTGAGAAAAGCATTAAGCTTTATACTCTTCTTAAG 2014 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1737 TTGGCCTAGTTTCTTTTGTTTTCTATTGAGAAAAGCATTAAGCTTTATACTCTTCTCAAG 1796 Query 2015 ATTCTTTT-TGTTGGTTTTT--CTTAAAACTTATTAAGAGCACTTTACTTTGCTGCTCAA 2071 || |||| ||||||||||| |||||| |||| | ||||||||||||||||||||||| Sbjct 1797 ATA-TTTTGTGTTGGTTTTTTTCTTAAA-CTTA--A-GAGCACTTTACTTTGCTGCTCAA 1851 Query 2072 AATTTT 2077 | |||| Sbjct 1852 A-TTTT 1856 Score = 501 bits (271), Expect = 8e-141 Identities = 518/626 (83%), Gaps = 61/626 (10%) Strand=Plus/Plus Query 1 ATGGGCAAGTCTAGTAAGAAATCCGTCACCGAAGTTGAAACACCTGCTTCAATGACAAAG 60 |||||||||||||| || ||||||| |||| |||||||| |||||||||||||||||||| Sbjct 1 ATGGGCAAGTCTAGCAAAAAATCCGCCACCAAAGTTGAATCACCTGCTTCAATGACAAAG 60 Query 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAAGAGGATTTGGACATGCAAGTTACGAAGAAG 120 |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAACAGGATTTGGACATCCAAGTTCCGAAGAAG 120 Query 121 CAGAAGAAAGAGTTGATTGATGTTGTTCAGAAGGAGAAAGCTGAGAAAACGGTACCTAAG 180 |||||||||||||||||||||| |||||||||||||| | |||||||||| ||||| ||| Sbjct 121 CAGAAGAAAGAGTTGATTGATGCTGTTCAGAAGGAGATATCTGAGAAAACCGTACCGAAG 180 Query 181 AAGGTAGAGAGTAGCAGTTCTGAC------GCTTCT---GATTCTGA---TGA--AGAGG 226 |||||||||||||||||||||||| |||||| |||||||| ||| ||| | Sbjct 181 AAGGTAGAGAGTAGCAGTTCTGACTCATCAGCTTCTTCTGATTCTGAGGATGATCAGAAG 240 Query 227 AG-AAGA----C-T---AA-GGAAACTCCATCTAAGTTGAAGGATGAGTCTTCTTCTGAA 276 | |||| | | || |||| |||| |||||| ||||| ||| ||||||||||| Sbjct 241 ACTAAGAAAGTCCTTGCAAAGGAACCTCCTTCTAAGCAGAAGGGTGACTCTTCTTCTGA- 299 Query 277 GAGGAGGATGACTCTTCTTCAGATGAGGAAATTGCGCCTGCGAAGAAGCGACCAGAACCT 336 |||||||||||| ||||||||| |||||||| |||||||| |||||||||| Sbjct 300 --------TGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAGAACCT 351 Query 337 ATTAAGAAGG-CTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTACTTCAGACGAGGA 395 || ||||| | | |||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 352 ATCAAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGA 410 Query 396 AACTGCCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A- 440 ||||||||||||||||||||||||||||| ||||||||||| | | || | Sbjct 411 AACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAA 470 Query 441 G---G------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGT 491 | | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 471 GAAAGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGC 530 Query 492 CCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAA-GATAGAGAGCAGCTCATCTG 550 ||||| |||||||||||| |||| |||| |||| | || | ||| ||||| ||||| | Sbjct 531 CCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGC-AGATAGCAGTTCATCAG 589 Query 551 ATGATGATTCTTCTTCAGACGAGGAA 576 | || || |||||||| ||||||||| Sbjct 590 AGGAGGAATCTTCTTCGGACGAGGAA 615 Score = 257 bits (139), Expect = 2e-67 Identities = 294/362 (81%), Gaps = 37/362 (10%) Strand=Plus/Plus Query 372 TGATGATTCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCT-T- 429 |||||| ||| |||| || |||||| |||| ||||||||||||||||||| | ||| | Sbjct 297 TGATGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAG-A-ACCTATC 354 Query 430 GAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 488 || ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 AAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 413 Query 489 TGTCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A-GA- 532 || ||||||||||||||||||||||| ||||||||||| | | || | || Sbjct 414 TGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAAGAA 473 Query 533 --------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCC 584 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 474 AGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGCCCC 533 Query 585 TATGAAGAAGCAAACAGCAGTCCTTGAGAAGGCTAAGGCAGAGAGCAGTTCATCCGACGA 644 | |||||||||| | |||| |||| |||| | || ||||| ||||||||||| || || Sbjct 534 TGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGA 593 Query 645 TGGA-TCTTCTTCGGACGAGGAACCCACCCCTGCAAAGAAAGAACCAATC-GTTGTTAAG 702 ||| ||||||||||||||||||| ||| ||||| | || | |||| | ||||||||| Sbjct 594 -GGAATCTTCTTCGGACGAGGAACTCACACCTGCCATTAA-G--CCAA-CAGTTGTTAAG 648 Query 703 AA 704 || Sbjct 649 AA 650 Score = 187 bits (101), Expect = 3e-46 Identities = 146/168 (87%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 320 AGAAGCGACCAGAACCTATTAAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGAT 378 |||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 449 AGAAGCAACCAGAACCTATTAAGAAAGAC-AAGGTAGAGAGCAGCTCATCTGATGATGAT 507 Query 379 TCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCT 438 ||| |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| | Sbjct 508 TCTTCTTCAGACGAGGAATCTGCCCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACC 567 Query 439 AAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 486 || | ||| ||||| ||||| || || || |||||||| ||||||||| Sbjct 568 AAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615 Score = 165 bits (89), Expect = 1e-39 Identities = 140/162 (86%), Gaps = 13/162 (8%) Strand=Plus/Plus Query 462 TGATGATTCTTCTTCAGACGAGGAAACTGTC-CCTGTGAAGAAGCAACCAGCAGTCCT-T 519 |||||| |||||||| || |||||| ||| | ||||||||||||||||||| | ||| | Sbjct 297 TGATGACTCTTCTTCGGATGAGGAACCTG-CGCCTGTGAAGAAGCAACCAG-A-ACCTAT 353 Query 520 -GAG-AAGGCTAA-GATAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 576 || ||| | || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 CAAGAAAGAC-AAGGA-AGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 411 Query 577 ACTGTCCCTATGAAGAAGCAA--A-CAGCAGTCCTTGAGAAG 615 |||| |||| ||||||||||| | ||||||||||||||||| Sbjct 412 ACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAG 453 Score = 91.6 bits (49), Expect = 2e-17 Identities = 74/85 (87%), Gaps = 6/85 (7%) Strand=Plus/Plus Query 1746 TAGAGCACCTCGTGGAGGACGTTTCTCGGAT--A-GAGCACCACGTGGACGTCACTCAGA 1802 ||||||||||||| ||||||| ||||||| | ||||||| ||||| ||| |||||| Sbjct 1500 TAGAGCACCTCGT---GGACGTTACTCGGATAGAGGAGCACCTCGTGGCCGTTTCTCAGA 1556 Query 1803 TAGAGGAGCACCTCGTGGCCGTTTC 1827 ||||||||||||||||||||||||| Sbjct 1557 TAGAGGAGCACCTCGTGGCCGTTTC 1581 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78922987640 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5