BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G18890.1 Length=2337 Score E Sequences producing significant alignments: (Bits) Value Ahg479405 jgi|Araly1|479405|fgenesh2_kg.3__2106__AT3G18890.1 2215 0.0 > Ahg479405 jgi|Araly1|479405|fgenesh2_kg.3__2106__AT3G18890.1 Length=2349 Score = 2215 bits (1199), Expect = 0.0 Identities = 1323/1384 (96%), Gaps = 4/1384 (0%) Strand=Plus/Plus Query 65 TGTAGTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGTGCA-TACACTAGCTAGTG 123 |||| |||||||||||||||||||||||||||||||||||| ||| || ||| ||| | Sbjct 33 TGTACTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGAGCATTA-GCTAAATAGAG 91 Query 124 AAGAAGAAGAAGACTAACTAAGAATGGAAGGAACTTGTTTTCTCCGTGGACAACCTCTCA 183 ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| Sbjct 92 AAGAAGAAGAAGACTAAAGAACAATGGAAGGAACTTGTTTTCTCCGTGGGCAACCTCTCA 151 Query 184 CAACAATACCCTCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 243 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 CCACAATACCATCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 211 Query 244 GGATTGTCAGGTTTTCAGGTTTTAAGAATCACTCGGTTTCTGGAAAGTCGAGGTCTTTCG 303 | |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 212 GTATTGTCAGGTTTTCTGGTTTAAAGAATCACTCGGTTTCTGGAAAGTCCAGGTCTTTCG 271 Query 304 ATCTTAGCCTCAGAG-CTTCAGGTCCCATTAGAGCAAGCTCTGTAGTAACAGAAGCAAGC 362 ||||||| |||| | | ||||||||||| ||||||||||||| |||||||||| ||| | Sbjct 272 ATCTTAGTTTCAG-GTCATCAGGTCCCATAAGAGCAAGCTCTGCAGTAACAGAAACAAAC 330 Query 363 CCTACCAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 422 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 CCTGCTAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 390 Query 423 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTGGGATTTCGGGTTAGAGCTGGAGTT 482 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 391 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTCGGATTTCGGGTTAGAGCTGGAGTT 450 Query 483 CGAAGTGCTCAGAGAGCAGGAAGTCTTGTGCAAAGTGTTAAGGAAATGAAGCTCCAGAAC 542 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 451 CGAAGCGCTCAGAGAGCAGGAAGTCTTGTGCAATGTGTTAAGGAAATGAAGCTCCAGAAC 510 Query 543 ACAGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 602 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 ACTGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 570 Query 603 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCGGTGATTATATGCTGTATTGGTGCT 662 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 571 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCAGTGATTATATGCTGTATCGGTGCT 630 Query 663 AGCGAGAAAGAGATCTCCGATATTACCGGTCCTTACAGGATCGATTACCTAGCCACCAAA 722 ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 631 AGCGAGAAAGAGATCTCTGATATTACCGGCCCTTACAGGATTGATTACCTCGCCACCAAA 690 Query 723 AACCTTGTTGATGCTGCAACATCAGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 782 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 691 AACCTTGTTGATGCTGCAACATCTGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 750 Query 783 GGGACAAATAAATTTGGATTTCCCGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGC 842 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 751 GGGACAAATAAATTTGGATTTCCTGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGT 810 Query 843 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGAAAGCGGTCTTAATTACGCAATAGTTAGA 902 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 811 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGCAAGCGGTCTCAATTACGCAATAGTTAGA 870 Query 903 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTGCT 962 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 871 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTTCT 930 Query 963 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTTGCAGAGTTGCTTGCT 1022 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 931 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTGGCAGAGTTGCTTGCT 990 Query 1023 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCTAAGATTGTGGAAGTGGTTGCTGAAACA 1082 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 991 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCCAAGATTGTGGAAGTGGTTGCTGAAACA 1050 Query 1083 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGGCCTTAT 1142 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1051 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGTCCTTAT 1110 Query 1143 GTCCCTCCACCGAAGGCATCAGTTGCAACCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1202 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1111 GTGCCTCCACCGAAGGCATCAGTTGCAGCCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1170 Query 1203 GTCACTCAAGAACCAACAGCTCCTAAAGAGGATGAAGCACCTCCAAAAGaaaaaaaTGTG 1262 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1171 GTCACTCAAGAGCCAACAGCTCCCAAAGAGGATGAAGCACCTCCAAAAGAAAAAGATGTG 1230 Query 1263 AAACCTAGGCCGCTGTCTCCTTATGCCTCCTACGAAGACTTGAAACCTCCAACATCTCCT 1322 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1231 AAACCTAGGCCGCTGTCTCCTTATGCCGCCTACGAAGACTTGAAAACTCCAACATCTCCT 1290 Query 1323 ATTCCAAATTCGACCACATCGGTCAGTCCTGCCAAATCTAAGGAGGTAGATGCCACTCAG 1382 ||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||| Sbjct 1291 ATTCCAAGTTCGACCACATCAGTCGGTCCTGCCAAATCTAAGGAAGTAGATGCCACTCAG 1350 Query 1383 GTTCCTGTTGAGGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTA 1442 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1351 GTTCTTGTTGATGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTA 1410 Query 1443 GAAG 1446 |||| Sbjct 1411 GAAG 1414 Score = 887 bits (480), Expect = 0.0 Identities = 692/785 (88%), Gaps = 51/785 (6%) Strand=Plus/Plus Query 1439 AGTAGAAGTAAAGCAAGTTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGCTA 1498 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1443 AGTAGAAGTAAAGCAAGCTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGCTA 1502 Query 1499 TG-AGAACCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGAGTACCAGAAAGAGTG 1557 || || | |||||||||||||||||||||||||||||||||||| |||||| ||||| || Sbjct 1503 TGAAG-ATCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGGGTACCAAAAAGAATG 1561 Query 1558 ATTCTTTGTCGCCTGGTCCAACCGATTCTGATACTGATAAAAG-----C---T-CAAC-A 1607 |||||||||||||||||||||| |||||||||||||||||||| | | |||| | Sbjct 1562 ATTCTTTGTCGCCTGGTCCAACAGATTCTGATACTGATAAAAGCTCAACAGTTGCAACAA 1621 Query 1608 --GT---T--G-CA--A----AAAC---TGTCACTGAGACGGCAGTTGCAACAAGTGTCA 1650 || | | || | |||| || ||||||||| ||||||| ||||||||||| Sbjct 1622 GTGTCACTGAGACAGCAGTTGAAACAAGTGCCACTGAGACAGCAGTTGAAACAAGTGTCA 1681 Query 1651 CTGAGACCTCAGTTGCAACAAGTGTACCTGAGACAGCAGTTGCAACGAGTGTCACTGAGA 1710 ||||||| |||||| ||||||||| |||||||||||||||||| | |||| |||||||| Sbjct 1682 CTGAGACAGCAGTTGAAACAAGTGTCCCTGAGACAGCAGTTGCATCAAGTGCCACTGAGA 1741 Query 1711 CAGCAGCACCAGCCACATCAAAAATGAGGCCTCTTTCTCCTTATGCAATTTACGCAGACC 1770 ||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1742 CAGCAGCCCCAGCCACACCAAGAATGAGGCCTCTTTCTCCTTATGCAGTTTACGCAGACC 1801 Query 1771 TGAAACCACCAACCTCACCAACTCCTGCATCAACAGGTCCCAAGGAAGCAGCATC----- 1825 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1802 TGAAACCACCAACCTCACCAACTCCTGCATCAACTGGTCCCAAGGAAGCAGCATCTGAGA 1861 Query 1826 T----G----T--AGAAGACAACTCAGAGTTACCTGGAGGCAATAATGATGTGCTGAAAA 1875 | | | |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1862 TAACAGCATCTGCAGAAGATAACTCAGAGTTGCCTGGAGGCAATAATGATGTGCTGAAAA 1921 Query 1876 CAGTTGATGGAAATCTGAACACAATTCCACCTTC-T--ACACCGGAAGCAGTACCTGTTG 1932 |||||||||||| | ||||||| | |||| |||| | | |||||||||||||||||||| Sbjct 1922 CAGTTGATGGAAGTGTGAACACTACTCCATCTTCCTCTATACCGGAAGCAGTACCTGTTG 1981 Query 1933 TTAGCAGTGCGATAGACACTTCCCTTGCTTCAGGAGACAATACAGCTCAGCCAAAGCCAA 1992 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1982 TTAGCAATGCGATAGACACTTCCCTTGCTTCAGAAGACAATACAGCTCAGCCAAAGCCAA 2041 Query 1993 GGCCTTTATCACCTTACACAATGTACGCGGACATGAAGCCTCCAACATCACCACTTCCAT 2052 |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 2042 GGCCCTTATCACCTTATACAATGTACGAGGACATGAAGCCTCCAACATCACCACTTCCAT 2101 Query 2053 CTCCAGTCACCAATCATTAGCTATGTGAGACGAGAATTGGCCTCCTAAACCCTGGAGCTT 2112 ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 2102 CTCCAGTCATCAATCATTAGTTATGTGAGACGAGAATTGGCCTCTTAAACCCTGGAGCTT 2161 Query 2113 CTTCTTAATTGCAGGTTGTAAACAATGAGTAAG--AGA--GTGATGGGGCAATTCAGTTT 2168 |||||||||||||| || |||||| ||||| || ||| | |||||||||||||||||| Sbjct 2162 CTTCTTAATTGCAGATTATAAACAGTGAGTGAGTGAGAAAGAGATGGGGCAATTCAGTTT 2221 Query 2169 TGCAG 2173 ||||| Sbjct 2222 TGCAG 2226 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88026556195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5