BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19270.1 Length=1685 Score E Sequences producing significant alignments: (Bits) Value Ahg479442 jgi|Araly1|479442|fgenesh2_kg.3__2143__AT3G19270.1 2355 0.0 Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326 148 1e-34 > Ahg479442 jgi|Araly1|479442|fgenesh2_kg.3__2143__AT3G19270.1 Length=1627 Score = 2355 bits (1275), Expect = 0.0 Identities = 1426/1497 (95%), Gaps = 17/1497 (1%) Strand=Plus/Plus Query 112 TAATAATCGATGGCTGAAATTTGGTTCTTGGTTGTACCAATCCTCATCTTATGCTTGCTT 171 |||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||| Sbjct 69 TAATAATCGATGGCTGAAATTTGGTTATTGGTTGTACCAAGCCTCATTTTTTGCTTGCTT 128 Query 172 TTGGTAAGAGTGATTGTTTCAAAGAAGAAAAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 231 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 129 TTGGTAAGAGTGATTGTTTCAAAGAAGAATAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 188 Query 232 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 248 Query 292 TTCTTCACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 351 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 TTCTTTACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 308 Query 352 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACTTGTGACTCATGCCCAT 411 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 309 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTCCTTGTGACTCATGCCCAT 368 Query 412 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 428 Query 472 TTCCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCCTCTTTCTACCCT 531 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 429 TTTCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCTTCTTTATACCCT 488 Query 532 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 548 Query 592 TGGGCCAATATGCCGATTGTCTCCACCTACCAGGAGATGAAGAAGTTCGCCTTTGATGTG 651 ||||||||||||| |||||||| ||||||||||||||||||||||| || || |||||| Sbjct 549 TGGGCCAATATGCATATTGTCTCTACCTACCAGGAGATGAAGAAGTTTGCGTTCGATGTG 608 Query 652 GGTATTCTAGCCATATTTGGACATTTGGAGAGTTCTTACAAAGAGATCTTGAAACATAAC 711 |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 609 GGTATTCTAGCCATTTTTGGGCATTTGGAGTGTTCTTACAAAGAGATCTTGAAACATAAT 668 Query 712 TACAATATTGTGGACAAAGGCTACAACTCTTTCCCCATGAGTCTCCCCGGAACATCTTAT 771 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 669 TACAATATTGTGGACAAAGGCTACAACTCTTTTCCCATGAGTATCCCCGGAACATCTTAT 728 Query 772 CACAAAGCTCTCATGGCGAGAAAGCAGCTAAAGACGATAGTAAGCGAGATTATATGCGAA 831 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct 729 CACAAAGCTCTCATGGCGAGAAAGCGGCTAAAGACGATAGTAAGCGAGATTATACGCGTA 788 Query 832 AGAAGAGAGAAAAGGGCCTTGCAAACGGACTTTCTTGGTCATCTACTCAACTTCAAGAAC 891 |||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| || Sbjct 789 AGAAGAGAGAAAAGGGTCTTGCAAACGGACTTTCTCGGTCATCTGCTCAACTTCAAGGAC 848 Query 892 GAAAAAGGTCGTGTGCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 951 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 GAAAAAGGTCGTGTTCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 908 Query 952 GCCGCACAGGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 1011 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 GCCGCACAAGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 968 Query 1012 CAGAAACTTCTAGAAGCTGTTAAGGCTGAGCAAAAGGCTATATATGAAGAAAACAGTAGA 1071 ||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 969 CAGAAGCTTCTAGAGGCTGTTAAGGCTGAGCAAAGGGCAATATATGAAGAAAACAGTAGA 1028 Query 1072 GAGAAGAAACCTTTAACATGGAGACAAACGAGGAATATGCCACTGACACATAAGGTTATA 1131 ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1029 GAGAAGAAATCTTTAACATGGGGACAAACGAGGAATATGCCACTAACACATAAGGTTATA 1088 Query 1132 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1148 Query 1192 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTGTTTCGGAAT 1251 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1149 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTATTTCGGAAT 1208 Query 1252 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGACCCATCTAGATTCGAG 1311 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 1209 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGATCCATCTAGATTTGAG 1268 Query 1312 GTAAATCCGAAGCCGAATACATTCATGCCTTTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1371 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1269 GTGAATCCGAAGCCGAATACATTCATGCCATTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1328 Query 1372 AACGAACTCGCCAAGTTACAAATTCTTATATTTCTCCACCATTTAGTTTCCAATTTCCGA 1431 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1329 AACGAACTCGCCAAGTTACAGATTCTTATATTTCTCCACCATTTAACTTCCAATTTCCGA 1388 Query 1432 TGGGAAGTGAAGGGAGGAGAGAAAGGAATACAGTACAGTCCATTTCCAATACCTCAAAAC 1491 ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || Sbjct 1389 TGGGAAGTGAAGGGAGGCGAGAAAGGAATACAGTACAGTCCATTTCCGATACCTCAAGAC 1448 Query 1492 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCCTTA---AA-CC-T-----T- 1540 ||||||||||||||||||||||||||||||||||||||| ||| || || | | Sbjct 1449 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCTTTAGTTAAACCATCAAAGTC 1508 Query 1541 TGT-AGTAATCTTTGT-TGTAGTTAGCCAAA-TCTAATCCAAATTCGATATAAAAAA 1594 | | | |||||||||| | || ||||||||| | ||||| ||||||||| ||||||| Sbjct 1509 TATTACTAATCTTTGTCT-TAATTAGCCAAAAT-TAATCTAAATTCGAT-TAAAAAA 1562 Score = 75.0 bits (40), Expect = 2e-12 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 1646 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1685 |||||||||||||||||||||||||||||||||||||||| Sbjct 1588 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1627 > Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326 Length=1392 Score = 148 bits (80), Expect = 1e-34 Identities = 174/218 (80%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 1156 ATCATATCCTTCACATTCAGAGAAGCAGTGGTTGATGTTGAATA-TAAGGGATATTTGAT 1214 ||| |||| |||||||| |||||||| || | ||||| ||||| || ||||||||||| Sbjct 1024 ATCTTATCTTTCACATTTAGAGAAGCTGTCGAAGATGTCGAATACGAA-GGATATTTGAT 1082 Query 1215 ACCTAAGGGATGGAAAGTGA-TGCCACTGTTTC-GGAATATTCATCACAAT-CCGAAATA 1271 ||| |||||||||||||| | |||| || ||| | ||||||||||||||| | || ||| Sbjct 1083 ACCAAAGGGATGGAAAGT-ATTGCCGCT-ATTCAGAAATATTCATCACAATGCTGATATA 1140 Query 1272 TTTTTC-AAACCCTGAGGTTTTCGACCCATCTAGATTCGAGGTAAATCCGAAGCCGAATA 1330 ||||| | || || ||||| || || |||||||| || ||||| ||||||| Sbjct 1141 -TTTTCGGATCCGGGA-AAATTCGATCCGTCGAGATTCGAAGTTGCGCCGAAACCGAATA 1198 Query 1331 CATTCATGCCTTTTGGAAGTGG-AGTTCATGCTTGTCC 1367 |||||||||||||||||||||| | ||||| ||||||| Sbjct 1199 CATTCATGCCTTTTGGAAGTGGGA-TTCATTCTTGTCC 1235 Score = 84.2 bits (45), Expect = 3e-15 Identities = 207/284 (73%), Gaps = 16/284 (6%) Strand=Plus/Plus Query 220 CTTCCTCCTGGTTCCATGGGATGGCCTTACTTAGGAGAGAC-TCTACAACTCTATTCACA 278 |||||||| || | ||||| | |||||| | || || || | | ||||| || ||||| Sbjct 106 CTTCCTCCGGGAACAATGGGTTATCCTTACGTCGGCGAAACAT-TCCAACTTTACTCACA 164 Query 279 AAACCCCAATGTTTTCTTCACCTCCAAGCAAAAG-AGATATGGAGAGATATTCAAAAC-C 336 | |||| ||||| |||||| | | || | | || ||||| ||| | | ||||| || | Sbjct 165 AGACCCTAATGTGTTCTTCGCAGCAAAAC-AGAGAAGATACGGATCGGTGTTCAAGACTC 223 Query 337 -CGAATCCTCGGCTATCCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACT 395 | || | || | |||||| |||||| | | |||||||| || |||| |||||| | Sbjct 224 ATGTAT--TGGGATGTCCATGTGTGATGATCTCAAGCCCTGAAGCAGCGAAATTTGTA-T 280 Query 396 T-GTGACTCATG-CCCATATGTTCAAACCAACTTATCC-GAGAAGCAAAGAGAAGCTGAT 452 | || || || | | ||| |||| ||||| |||| ||| | | || ||||||| | || | Sbjct 281 TGGTTAC-CAAGTCTCATTTGTTTAAACCGACTTTTCCGGCG-AGTAAAGAGAGGATGCT 338 Query 453 AGG-ACCCTCTGCACTCTTTTTCCACCAAGGAGATTATCATTCC 495 || | | ||| ||||||||||||||||||||||||||||| Sbjct 339 TGGAAAAC-AAGCAATCTTTTTCCACCAAGGAGATTATCATTCC 381 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63191716455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5