BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19280.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479443 jgi|Araly1|479443|fgenesh2_kg.3__2144__AT3G19280.1 2575 0.0
Ahg923398 jgi|Araly1|923398|scaffold_104679.1 1171 0.0
Ahg923394 jgi|Araly1|923394|scaffold_104675.1 241 2e-62
> Ahg479443 jgi|Araly1|479443|fgenesh2_kg.3__2144__AT3G19280.1
Length=1732
Score = 2575 bits (1394), Expect = 0.0
Identities = 1630/1740 (94%), Gaps = 31/1740 (2%)
Strand=Plus/Plus
Query 75 AAATCGTCGCTTTGATAATGGGTGTTTTCTCCAATCTTCGAGGTCCTAAAATTGGATTGA 134
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 19 AAATCGTCGCTTTGTTAATGGGTGTTTTCTCCAATCTCCGAGGTCCTAAAATTGGATCGA 78
Query 135 CCCATGAAGAATTGCCTGTAGTAGCCAATGGCTCTACTTCTTCTTCTTCGTCTCCTTCCT 194
|||||||||||||||| | ||||||||||| || ||||||||||||||||| ||||||
Sbjct 79 CCCATGAAGAATTGCC--T-GTAGCCAATGG--CT-CTTCTTCTTCTTCGTCTACTTCCT 132
Query 195 CTTTCAAGCGTAAAGTCTCGACCTTTTTGCCAATCTGCGTGGCTCTTGTCGTCATTATCG 254
|||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 133 CTTTCAAGCGTAAAGTCTCGACCTTTTTGCCAATCTGCGTGGCTCTGGTTATCATCATCG 192
Query 255 AGATCGGGTTCCTCTGTCGGCTCGATAACGCTTCTTTGGTCGATACGTTAACCCATTTTT 314
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 193 AGATCGGGTTCCTGTGTCGGCTCGATAACGCTCCTTTGGTCGATACGTTGACCCATTTTT 252
Query 315 TCACCAAGTCGTCGTCCGATTTGAAAGTTGGGTCAGGAATAGAGAAATGCCAGGAGTGGT 374
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 253 TCACCAAGTCGTCGTCCGATTTGAAAGTTGGGTCGGGAATGGAGAAATGCCAGGAGTGGT 312
Query 375 TAGAGAGAGTGGATTCAGTTACTTATTCTAGAGATTTCACTAAAGATCCGATTTTTATCT 434
||||||||||||| ||||| ||||||||||||||||||| |||| |||| || ||||||
Sbjct 313 TAGAGAGAGTGGACTCAGTGACTTATTCTAGAGATTTCAGTAAAAATCCAATCTTTATCG 372
Query 435 CTGGTAGTAACAAGGACTTCAAATCGTGCTCTGTTGATTGTGTAATGGGATTCACTTCAG 494
|||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||
Sbjct 373 CTGGTAGTAACAAGGACTTCGAATCGTGTTCTGTTGATTGTGTTATGGGATTCAGTTCAG 432
Query 495 ATAAGAAACCTGATGCGGCTTTTGGATTAAGTCATCAACCTGGAACACTCAGTATAATCC 554
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ATAAGAAACCCGATGCGGCGTTTGGATTAAGTCATCAACCTGGAACACTCAGTATAATCC 492
Query 555 GTTCCATGGAATCAGCACAGTATTACCAAGAGAATAATCTTGCTCAAGCACGACGGAAAG 614
||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| |
Sbjct 493 GTTCCATGGAATCGGCACAGTACTATCAAGAGAACAATCTTGCTCAAGCACGACGGAGGG 552
Query 615 GTTATGATATTGTGATGACAACTAGTCTGTCATCAGATGTTCCTGTTGGGTATTTTTCAT 674
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GTTATGATGTTGTGATGACAACTAGTCTGTCATCAGATGTTCCTGTTGGGTATTTTTCAT 612
Query 675 GGGCGGAATATGATATTATGGCTCCAGTGCAACCAAAAACAGAGAAAGCTCTTGCTGCTG 734
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 613 GGGCGGAATATGATATTATGGCTCCAGTGCATCCAAAGACCGAGAAAGCTCTTGCTGCTG 672
Query 735 CTTTTATTTCCAATTGCGCCGCTCGGAATTTCCGCCTGCAAGCTCTTGAAGCCTTAATGA 794
||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 673 CTTTTATATCCAATTGTGCGGCTCGGAATTTCCGCCTGCAAGCTCTTGAAGCCTTAATGG 732
Query 795 AGACGAATGTTAAGATTGATTCTTATGGTGGTTGTCACCGGAATCGGGATGGGAGTGTGG 854
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGGCGAATGTTAAGATTGATTCTTATGGTGGTTGTCACCGGAATCGGGATGGGAGTGTGG 792
Query 855 AGAAGGTTGAAGCTCTTAAGCACTACAAATTCAGTCTAGCTTTTGAGAACACCAACGAGG 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGAAGGTTGAAGCTCTTAAGCACTACAAATTCAGTCTAGCTTTTGAGAACACCAACGAGG 852
Query 915 AGGATTATGTCACAGAGAAGTTCTTCCAATCTCTAGTCGCTGGATCTGTCCCTGTGGTTG 974
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 853 AGGACTACGTCACAGAGAAGTTCTTCCAATCTCTAGTTGCTGGATCTGTCCCTGTGGTTG 912
Query 975 TTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCCTGACTCATTCCTTCACATTAAGC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCCTGACTCATTCCTTCACATTAAGC 972
Query 1035 AGATGGATGATGTCAAGGCAGTTGCAAAGAAAATGAAGTATCTTGCGGATAACCCTGACG 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGATGGATGATGTCAAGGCAGTTGCAAAGAAAATGAAGTATCTTGCGGATAACCCTGACG 1032
Query 1095 CCTATAATCAGACGCTAAGATGGAAACATGAAGGCCCTTCAGATTCTTTTAAGGCACTTA 1154
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1033 CCTATACTCAGACGCTAAGATGGAAACACGAAGGCCCTTCAGATTCTTTTAAGGCACTTA 1092
Query 1155 TTGATATGGCTGCTGTACACTCTTCTTGTCGTCTCTGCATCTTTGTGGCTACAAGGATTC 1214
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TTGATATGGCTGATGTACACTCTTCTTGTCGTCTCTGCATCTTTGTGGCTACAAGGATTC 1152
Query 1215 GTGAGCAAGAAGAGAAGAGCCCTGAGTTTAAGAGACGACCCTGCAAATGCACCAGAGGCT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1153 GTGAGCAAGAAGAGAAGAGCCCTGAGTTTAAGAGACGACCCTGCAAATGCAGCAGGGGCT 1212
Query 1275 CAGAGACAGTTTATCATTTGTATGTTAGAGAAAGAGGACGGTTTGACATGGAATCCATCT 1334
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CACAGACAGTTTATCATTTGTATGTTAGAGAAAGAGGACGGTTTGACATGGAATCCATCT 1272
Query 1335 TCTTGAAGGATGGAAATCTGACTCTGGAAGCTCTGGAATCTGCGGTTCTTGCGAAGTTCA 1394
||||||| |||||||||||||||| |||||||||| ||||||| |||||||| |||||||
Sbjct 1273 TCTTGAACGATGGAAATCTGACTCCGGAAGCTCTGAAATCTGCAGTTCTTGCAAAGTTCA 1332
Query 1395 TGTCTCTGAGATATGAACCAATATGGAAGAAGGAAAGACCCGCGAGCTTAAGAGGAGACG 1454
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 1333 AGTCTCTGAGACATGAACCGATATGGAAGAAGGAAAGACCCGCGACCTTAAGAGGAGATG 1392
Query 1455 GCAAGCTTAGAGTACATGGGATATATCCTATTGGTCTGACTCAAAGACAAGCTCTTTACA 1514
| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1393 GTGAGCTTAGAGTACATGGGATATATCCGCTTGGTCTGACTCAAAGACAAGCCCTTTACA 1452
Query 1515 ACTTCAAATTCGAAGGAAATTCAAGTCTCAGTACTCACATACAGAGAAACCCTTGTCCCA 1574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1453 ACTTCAAATTCGAAGGAAATTCAAGTCTCAGTACTCACATACAGAGAAACCCTTGTTCCA 1512
Query 1575 AATTCGAAGTTGTCTTTGTCTAAATTCTAGAAGAAAACCAAAGTTTATTTTGTGATACAT 1634
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1513 AATTCGAAGTTGTCTTTGTCTAAATTCTAGAAGAAAACCAAAGTTTACTTTGTGATGCAC 1572
Query 1635 GCTTTGAGTGTAGTTTGTCTTAGGCAGGAATTAAGGAATGTGTACATATAAAAATAAAAG 1694
||||||| |||||||||| |||||||||| |||||||| | ||||||||||||||||||
Sbjct 1573 GCTTTGAATGTAGTTTGTTTTAGGCAGGA-TTAAGGAACGAGTACATATAAAAATAAAAA 1631
Query 1695 -AGTTTTTGCTTGTCTTATTGGGTACTACAATGCACATATGTTCAAGTGTAGTTTGATAA 1753
|| |||||||| ||||||||||| | ||| | | ||| ||| || | | || ||
Sbjct 1632 CAGATTTTGCTTCTCTTATTGGGT--T-CAA-G-A-ATA-GTT----TG-A-T--GA-AA 1675
Query 1754 AACACAAAATGAC-AC--AAGCATTCTCAGATT-AGCTTTAACAGATTTACAGATACTGC 1809
||||||||| | | || ||||||||| || ||||||||||||||||||||||||||
Sbjct 1676 --CACAAAATGGCTAATTAAACATTCTCAG-TTCAGCTTTAACAGATTTACAGATACTGC 1732
> Ahg923398 jgi|Araly1|923398|scaffold_104679.1
Length=1579
Score = 1171 bits (634), Expect = 0.0
Identities = 1060/1263 (84%), Gaps = 39/1263 (3%)
Strand=Plus/Plus
Query 355 AGAGAAATGCCAGGAGTGGTTAGA-GAGAGTGGATTCAGTTACTTATTCTAGAGATTTCA 413
||| || ||| |||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 314 AGATAACTGCGAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTATTCTAGAGATTTCA 372
Query 414 CTAAAGATCCGATTTTTATCTCTGGTAGT-AACAAGGACTTCAAATCGTGCTC-TGTTGA 471
|||||||||| ||||||||||||||| || || |||||||| |||| ||| || ||| ||
Sbjct 373 CTAAAGATCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTAAATGGTG-TCCTGTGGA 430
Query 472 TTGTGTAAT-GG-GATTCACTTCAGATAAGAAACCTGATGCGGCTTTTGGATTAAGTCAT 529
|||| | | || ||| | ||||| || ||||| ||||| || ||||||||| |||||
Sbjct 431 TTGTACATTTGGAGAT--AGTTCAGGGAAAAAACCAGATGCTGCGTTTGGATTAGGTCAT 488
Query 530 CAACCTGGAACACTCAGTATAATCCGTTCCATGGAATCAGCACAGTATTA-CCAAGAGAA 588
||||||||||| || ||||||||||| |||||||||||||||||||| || ||| || ||
Sbjct 489 CAACCTGGAACTCTTAGTATAATCCGCTCCATGGAATCAGCACAGTACTATCCA-GAAAA 547
Query 589 TAATCTTGCTCAAGCACGACGGAAAGGTTATGATATTGTGATGACAACTAGTCTGTCATC 648
| ||||||| || |||||||||| |||||||||||| |||||||| |||||||| |||||
Sbjct 548 TGATCTTGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTAGTCTATCATC 607
Query 649 AGATGTTCCTGTTGGGTATTTTTCATGGGCGGAATATGATATTATGGCTCCAGTGCAACC 708
|||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |
Sbjct 608 AGATGTTCCTGTTGGGTATTTTTCGTGGGCGGAGTATGATATTATGGCTCCGGTACAGGC 667
Query 709 AAAAACAGAGAAAGCTCTTGCTGCTGCTTTTATTTCCAATTGCGCCGCTCGGAATTTCCG 768
|| || || |||||| | || |||||||||||||| ||||| | ||||||||||| ||
Sbjct 668 TAAGACCGAAAAAGCTATCGCAGCTGCTTTTATTTCTAATTGTGGTGCTCGGAATTTTCG 727
Query 769 CCTGCAAGCTCTTGAAGCCTTAATGAAGACGAATGTTAAGATTGATTCTTATGGTGGTTG 828
| ||||| ||||||||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 728 TTTACAAGCACTTGAAGCCCTGATGAAAACTAACGTTAAGATTGATTCTTATGGTGGTTG 787
Query 829 TCACCGGAATCGGGATGGGAGTGTGGAGAAGGTTGAAGCTCTTAAGC-ACTACAAATTCA 887
||| || || |||||||| | || || ||||||||||||||||||| | ||||||||||
Sbjct 788 TCATCGAAACCGGGATGGAAAAGTTGACAAGGTTGAAGCTCTTAAGCGA-TACAAATTCA 846
Query 888 GTCTAGCTTTTGAGAACACCAACGAGGAGGATTATGTCACAGAGAAGTTCTTCCAATCTC 947
|| | ||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 847 GTTTGGCTTTTGAGAATACTAACGAGGAGGATTATGTCACCGAGAAATTCTTCCAATCCC 906
Query 948 TAGTCGCTGGATCTGTCCCTGTGGTTGTTGGAGCTCCAAATATAGAAGAATTTGCACCTT 1007
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||| |||
Sbjct 907 TAGTTGCTGGATCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCCTG 966
Query 1008 CTCCTGACTCATTCCTTCACATTAAGCAG-ATGGATGATGTCA-AGGCAGTTGCAAAGAA 1065
|| | ||||||||||||||||||||| || ||||| ||||| | || ||||||||||||
Sbjct 967 CTTCAGACTCATTCCTTCACATTAAG-AGTATGGAAGATGT-AGAGCCAGTTGCAAAGAG 1024
Query 1066 AATGAAGTATCTTGCGGATAACCCTGAC-GCCTATAATCAGACGCTAAGATGGAAACATG 1124
||||||||||||||| | ||||||| || || ||||||||||| |||||||||||| |||
Sbjct 1025 AATGAAGTATCTTGCAGCTAACCCT-ACTGCTTATAATCAGACACTAAGATGGAAATATG 1083
Query 1125 AAGGCCCTTCAGATTCTTTTAAGGCACTTATTGATATGGCTGCTGTACACTCTTCTTGTC 1184
| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 1084 AGGGTCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTTCTTGCC 1143
Query 1185 GTCTCTGCATCTTTG-TGGCTACAAGGATTCGTGAGCAAGAAGAGAAGAGCCCTGAGTTT 1243
|||||||||| ||| |||| || ||| | || || ||||||||||| ||||| || |||
Sbjct 1144 GTCTCTGCAT-TTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGAAAAGCCC-GAATTT 1201
Query 1244 -AAGAGACGACCCTGCAAATGCACCAG---AGGCTCAGAGACAGTTTATCAT-TTGTATG 1298
|||| |||||| |||||||||| || ||| ||||| ||| |||||||| || | ||
Sbjct 1202 CAAGAAACGACCTTGCAAATGCAGTAGGGGAGGATCAGACACACTTTATCATGTTTT-TG 1260
Query 1299 TTAGAGAAAGAGGACGGTTTGACATGGAATCCATCTT-CTTGAAGGA-TGGAAATCTGAC 1356
||||||||||||| |||||||| |||||||||||||| || |||| | |||||||||
Sbjct 1261 TTAGAGAAAGAGGCCGGTTTGAAATGGAATCCATCTTTCT--AAGGGGTAAAAATCTGAC 1318
Query 1357 TCTGGAAGCTCTGGAATCTGCGGTTCTTGCGAAGTTCATGTCTCTGAGATATGAACCAAT 1416
|| ||||||||| |||||||||||||| | || |||| |||||| | | ||| || |
Sbjct 1319 TCAGGAAGCTCTAGAATCTGCGGTTCTCACCAAATTCAAGTCTCTTAAACGTGAGCCGGT 1378
Query 1417 ATGGAAGAAGGAAAGACCCGCGA-GCTTAAGAGGAGACGGCAAGCTTAGAGTACATGGGA 1475
|||||||||||||| || | || |||||| ||||||| ||||||||||||| |||
Sbjct 1379 TTGGAAGAAGGAAAGGCCTG-GAAGCTTAAAAGGAGACAATGAGCTTAGAGTACACCGGA 1437
Query 1476 TATATCCTATTGGTCTGACTCAAAGACAAGCTCTT-TACAACTTCAAATTCGAAGGAAAT 1534
||||||| |||| || || ||| |||| ||| || ||||| ||||||||||| |||||
Sbjct 1438 TATATCCGCTTGGCCTAACGCAACGACAGGCT-TTGTACAAGTTCAAATTCGAGGGAAAC 1496
Query 1535 TCAAGTCTCAGTACTCACATACAGAGA-AACCCTTGTCCCAAATTCGAAGTTGTCTTTGT 1593
|| ||| | |||| |||||| || ||| ||||||||| | ||||| || |||||||| ||
Sbjct 1497 TCGAGTTTAAGTAGTCACATTCA-AGACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGT 1555
Query 1594 CTA 1596
|||
Sbjct 1556 CTA 1558
> Ahg923394 jgi|Araly1|923394|scaffold_104675.1
Length=1091
Score = 241 bits (130), Expect = 2e-62
Identities = 226/270 (84%), Gaps = 15/270 (6%)
Strand=Plus/Plus
Query 362 TGCCAGGAGTGGTTAGA-GAGAGTGGATTCAGTTACTTATTCTAGAGATTTCACTAAAGA 420
||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 394 TGCAAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTATTCTAGAGATTTCACTAAAGA 452
Query 421 TCCGATTTTTATCTCTGGTAGT-AACAAGGACTT-CAAATCGTGCTCTGTTGATTGTGTA 478
||| ||||||||||||||| || || |||||||| ||| | ||| ||||| |||||| |
Sbjct 453 TCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTCAA-TGGTGTTCTGTGGATTGTACA 510
Query 479 AT-GG-GATTCACTTCAGATAAGAAACCTGATGCGGCTTTTGGATTAAGTCATCAACCTG 536
| || ||| | ||||| || ||||| ||||| || ||||||||| ||||||||||||
Sbjct 511 TTTGGAGAT--AGTTCAGGGAAAAAACCAGATGCTGCGTTTGGATTAGGTCATCAACCTG 568
Query 537 GAACACTCAGTATAATCCGTTCCATGGAATCAGCACAGTATTA-CCAAGAGAATAATCTT 595
|||| || |||||||| ||||||||||||||||||||||| || ||| || ||| || ||
Sbjct 569 GAACTCTTAGTATAATTCGTTCCATGGAATCAGCACAGTACTATCCA-GAAAATGATATT 627
Query 596 GCTCAAGCACGACGGAAAGGTTATGATATT 625
|| || ||||||||| ||| ||||||||
Sbjct 628 GCACAGGCACGACGGT--GGT-ATGATATT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5