BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19450.1 Length=1568 Score E Sequences producing significant alignments: (Bits) Value Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1 1958 0.0 Ahg944486 jgi|Araly1|944486|scaffold_700715.1 662 0.0 > Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1 Length=1424 Score = 1958 bits (1060), Expect = 0.0 Identities = 1349/1478 (91%), Gaps = 61/1478 (4%) Strand=Plus/Plus Query 1 AAGAGGTTTGGTTGGTCGAGCTTACTGA-TTAAAAAATATACACGTCCACCAAATATTAA 59 |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||| Sbjct 1 AAGAGGTTTGGTTGGTCGAGCTTACTGACTTAAAAAA-ATACACATCCACCAAAAATTAA 59 Query 60 AACAATATATCCCATTTTTCCTCCTCTCTTTTGGTATTACATTAATATTTTATTATTTCC 119 || ||| ||| |||||||||||||||||||||||||||| || ||| | |||| |||||| Sbjct 60 AATAATGTATTCCATTTTTCCTCCTCTCTTTTGGTATTAAATAAATCTCTTATAATTTCC 119 Query 120 CCATTTGCTCTGTATATATAAACATATGTCAATAGAGTGCCTCTACAGTCATGTTTCCAT 179 |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 120 CCATTTGCTCTG--TATAT--ACATATGTCAATAGAGTGCCTCTATAGTCATGTTTCCAT 175 Query 180 AGACATAATCTCTCACCATTGTTTTTCTCTGCaaaactaaagaaacaaaaaaagaaaaat 239 || | || | ||| | |||||||||||||| | ||||| |||| | Sbjct 176 AG-----A-----CA-C--------TCT-T-CAAAACTAAAGAAA-ACAAAAA-AAAATT 212 Query 240 -cggagaaaccaagaaaa-aagaaatgggaagtgtagaagcaggagaaaagaagGCTTTA 297 ||||||||||||||||| || ||||||||| || |||| ||||||||||||||||||| Sbjct 213 CCGGAGAAACCAAGAAAACAAAAAATGGGAA--GT-GAAGGAGGAGAAAAGAAGGCTTTA 269 Query 298 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCTCT-CTCCTTACTCCTACACTTTAAGGAG 356 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 270 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCT-TGCTCCTTACTCCTACACTTTAAGGAG 328 Query 357 CACAGGAGCAGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 416 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 CACCGGAGCTGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 388 Query 417 TCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 476 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 389 CCACCAGATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 448 Query 477 AGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 536 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 449 GGTAGGTGAGGTGGTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 508 Query 537 CGGAGTCGGCGTGGTCGTTGGATGCTGCGGTAGCTGCAAACCATGCAGCTCAGAACTTGA 596 ||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 509 CGGAGTCGGCGTGATTGTCGGATGCTGCGGAAGCTGCAAACCATGCAGCTCAGAACTTGA 568 Query 597 GCAGTATTGTAACAAGAGAATCTGGAGTTACAACGATGTCTACACCGATGGAAAACCTAC 656 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 569 GCAGTACTGTAACAAGAGAATCTGGAGTTACAATGATGTCTACACCGATGGAAAACCCAC 628 Query 657 TCAAGGTGGCTTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 716 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 629 ACAAGGTGGATTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 688 Query 717 AGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAACGGTTTATAGTCC 776 |||||||||||||||||||||||||||||| || ||||| |||||||| ||||| ||||| Sbjct 689 AGGAATGGCGGTGGAGCAGGCTGCACCGCTGCTATGCGCCGGAGTAACCGTTTACAGTCC 748 Query 777 GTTGAGCCACTTCGGTCTAATGGCGAGTGGGCTTAAAGGAGGGATTCTAGGGTTAGGTGG 836 ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 749 GTTGAGCCATTTCGGTCTAATGGCAAGTGGGCTCAAAGGAGGGATTCTAGGGTTAGGTGG 808 Query 837 AGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCATGTGACTGTGATAAG 896 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 809 AGTAGGACACATGGGTGTGAAGATAGCTAAAGCAATGGGACATCATGTGACTGTGATAAG 868 Query 897 CTCATCAGATAAGAAAAAAGAAGAAGCTATCGAACATTTAGGAGCTGACGACTATGTGGT 956 ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 869 CTCATCAGATAAGAAAAAAGAAGAAGCAATGGAACATTTAGGAGCTGATGACTATGTGGT 928 Query 957 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCCCTTGACTACATCATTGACAC 1016 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 929 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCTCTTGACTACATCATCGACAC 988 Query 1017 CGTACCGGTGTTTCACCCTCTCGACCCTTACTTGGCTTGTCTTAAACTCGACGGGAAATT 1076 |||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| Sbjct 989 CGTACCTGTGTTTCACCCTCTCGAGCCTTACTTAGCTTGTCTTAAACTCGATGGGAAATT 1048 Query 1077 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCGTGACCCCTCTCGTCATTCTTGG 1136 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1049 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCTTGACTCCTCTCGTCATTCTTGG 1108 Query 1137 GAGGAAAGTGATATCAGGGAGCTTTATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1196 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1109 GAGGAAAGTGATATCGGGGAGCTTCATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1168 Query 1197 TTTCTGCAAAGAGAAAGGGCTTACGTCGACGATTGAAACTGTGAAGATCGATGAGCTTAA 1256 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 1169 TTTCTGCAAAGAGAAAGGGCTTACGTCGACCATTGAAACTGTGAAGATTGATGAACTTAA 1228 Query 1257 CATTGCGTTTGAGAGGCTTCGCAAGAACGATGTTCGTTACAGATTTGTGGTTGATGTTGC 1316 || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1229 CACTGCGTTTGAGAGGCTTAGCAAGAACGATGTTCGTTACAGATTTGTCGTTGATGTTGC 1288 Query 1317 AGGAAGTAATCTGGTGGAGGAGGCTGCAACAACTACAAACTAAAGAGGGCAGGGCACATT 1376 |||||||| || ||||||||||||||||||||||||| |||||||||||| | | Sbjct 1289 TGGAAGTAACCTCGTGGAGGAGGCTGCAACAACTACAAGCTAAAGAGGGCA----A-A-- 1341 Query 1377 GATACATGAACGAAAAATTGTAACGGGCTTGTTTG-TCCAACGAATGTTTTGTTGTTGTC 1435 ||| | | ||||||||| || | | |||||||||||||||||||| ||| Sbjct 1342 -ATA--T----------T-GTAACGGGCCTGGTAGGTCCAACGAATGTTTTGTTGT-GTC 1386 Query 1436 TTTTT--CAAATGGTTCAAACACGAATGCTTTGGCTTT 1471 ||||| ||||||||||||| ||||||||||||| ||| Sbjct 1387 TTTTTTTCAAATGGTTCAAAAACGAATGCTTTGGTTTT 1424 > Ahg944486 jgi|Araly1|944486|scaffold_700715.1 Length=1114 Score = 662 bits (358), Expect = 0.0 Identities = 841/1065 (79%), Gaps = 70/1065 (7%) Strand=Plus/Plus Query 297 AGGATGGGCTGCAAGAGATCCTTCTGGTG-TTCTCTCTCCTTACTCCTACACT-TTAAG- 353 ||| ||||||||||||||||| ||||| | ||||||||||||| | |||||| || || Sbjct 53 AGGCTGGGCTGCAAGAGATCCATCTGG-GACTCTCTCTCCTTACACTTACACTCTT-AGA 110 Query 354 GAGCACAGGAGCAGATGATGTGTATATAAAG-GTTATATGCTGTGGAATATGCCATACTG 412 ||| || ||| |||| |||||| | || ||| | || ||||||||||| ||||| |||| Sbjct 111 GAG-ACTGGACCAGAGGATGTGAACAT-AAGAATCATTTGCTGTGGAATCTGCCACACTG 168 Query 413 ATATTCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACG 472 || |||| |||| |||||||||||||| |||||||| || || |||||||| ||||| | Sbjct 169 ATCTTCATCAAACCAAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCAGGGCATG 228 Query 473 AGGTAGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATG 532 | || |||||||| ||| |||| || ||||||||||||||||||||||| ||||| || Sbjct 229 AAGTGGTAGGTGAAGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACTGTAGGTGACA 288 Query 533 TAGTCGGAGTCGGCGTG-GTCGTTGGATGCTGCGGTA-GCTGCAAACCATGC-AGCTCAG 589 |||| ||||| || || |||||||||| ||||| | | || | || ||| || || Sbjct 289 TAGTTGGAGTTGG-TTGCCTCGTTGGATGTTGCGG-AGGTTGTAGCCCTTGCGAG-AGAG 345 Query 590 AACTTGAGCAGTATTGTAAC-AAG-AGAATCTGGAGTTACAACGATGTCTACACCGATGG 647 | || || ||||||||| | ||| || || ||||| ||||||||||| |||| |||||| Sbjct 346 ATCTGGAACAGTATTGT-CCAAAGAAG-ATTTGGAGCTACAACGATGTTTACATCGATGG 403 Query 648 AAAACCTACTCAAGGTGGCTTCGCCGACA-CCA-TGATCG-TCAATCAAAAGTTTGTGGT 704 ||||||| ||||| || |||| | | | ||| | ||| || | |||||||||||||| Sbjct 404 TCAACCTACACAAGGCGGGTTCG-CTAAAGCCACCG-TCGTTC-ACCAAAAGTTTGTGGT 460 Query 705 GAAGATTCCAGAAGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAAC 764 |||||||||||||||||||||||| ||||||||||| || ||||| ||||| || || || Sbjct 461 GAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGAC 520 Query 765 GGTTTATAGTCCGTTGAGCCACTTCGGTCT-AATGGCGAGTGGGCTTAA-AGGAGGGATT 822 ||| |||||||| |||||||||||||||| || | | ||| ||| |||||| || Sbjct 521 GGTGTATAGTCCACTGAGCCACTTCGGTCTGAAA--CAACCAGGCCTAAGAGGAGGCATA 578 Query 823 CTAGGGTTAGGTGGAGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCAT 882 ||||||||||||||||| || |||||||||||||| ||||| ||||||||||| |||||| Sbjct 579 CTAGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCAT 638 Query 883 GTGACTGTGATAAGCTCATCAGATAAGAAAAAAGAAGAAGCTAT-CGA-ACATTTAGGAG 940 |||||||| || ||||||||| | ||||| | |||||| ||| | | | || || |||| Sbjct 639 GTGACTGTCATTAGCTCATCAAACAAGAAGAGAGAAGAGGCTCTGCAAGACCTT--GGAG 696 Query 941 CTGACGACTATGTGGT-GAGCTCTGATCCA-GCAGAGATGCAAAGACTCG-CAGATTCCC 997 |||| || || ||| | | | ||||| ||| ||| ||||| | || | | | ||||| Sbjct 697 CTGATGATTACGTGATCG-GATCTGA-CCAAGCAAAGATG-AGCGAATTGGCTGATTCG- 752 Query 998 TTG-ACTACATCATTGACACCGTACCGGTGTT--TCACCCTCTCGACCCTTACTTGGCT- 1053 ||| | ||| | |||||||| || || |||| |||| | || || ||||| ||| || Sbjct 753 TTGGATTACGTAATTGACACGGTTCC--TGTTCATCACGCACTTGAGCCTTATTTGTCTC 810 Query 1054 TGTCTTAAACTCGACGGGAAA-TTGATTCTCATGGGTGTTATCAACACTCCTCTT-CAGT 1111 || ||||| || || ||||| || ||||||||||| |||||||||| ||| ||| |||| Sbjct 811 TG-CTTAAGCTTGATGGGAAGCTT-ATTCTCATGGGAGTTATCAACAATCC-CTTGCAGT 867 Query 1112 T-CGTGACCCCTCT-CGTCATTCTTGGGAGGAAAGTGATATCAGGGAGCTTTATAGGGAG 1169 | | | || ||||| | | || |||||||||||||||||| | |||||||| |||||||| Sbjct 868 TTCTT-ACTCCTCTGCTT-ATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAG 925 Query 1170 CATTAAAGAGACAGAAGA-AGTG-TTG-GCTTTCTGCAAAGAGAAAGGGCTT-ACGT-CG 1224 ||| || |||||||| || | || ||| | || ||| ||||| |||||| || | || || Sbjct 926 CATGAAGGAGACAGAGGAGA-TGCTTGAG-TT-CTGTAAAGA-AAAGGGATTGA-GTTCG 980 Query 1225 A-CGATTGAAACTGTGAAGATCGATGA-GCTTAACATTGCGTTTGAGAGGCTTCGC-AAG 1281 | | || ||| ||||||||| ||| | | |||||| |||||||||||| || || ||| Sbjct 981 ATC-ATCGAAGTTGTGAAGATGGATTATG-TTAACACTGCGTTTGAGAGACT-CGAGAAG 1037 Query 1282 AACGATGTTCGTTACAGATTTGTGGTTGATGTTGCAGGAAGTAAT 1326 |||||||| ||||| || || || |||||||| | |||||| ||| Sbjct 1038 AACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCAAT 1082 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58735157790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5