BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19480.1 Length=1961 Score E Sequences producing significant alignments: (Bits) Value Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1 3101 0.0 Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396 1033 0.0 Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1 848 0.0 > Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1 Length=1942 Score = 3101 bits (1679), Expect = 0.0 Identities = 1864/1953 (95%), Gaps = 13/1953 (1%) Strand=Plus/Plus Query 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACATTATATTCCCGCCATCGCGA 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| Sbjct 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACACTATATTCCCGCCACCACGA 60 Query 61 TGGCGACGTCTCTGAATCTATCATCGATCTTCTCCTCCTCCTCAAGGCTCGTCACCACTC 120 |||||||||||||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 61 TGGCGACGTCTCTGAATCTATCATCGGTC-T-T-CTCCTCCTCAAGGCTCGTCACCACTC 117 Query 121 CCTCCTCTGTTTTTCCCATCCGTCAGAGGCGACGGATCATCCTCGTTACGTCTTCTTCTT 180 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 118 CCTCCTCTGTTTTTCCCATCCGTCAGAGACGACGGATCATCCTCGTTACGTCTTCTTCTT 177 Query 181 CCGGAGGTGGAGGAAAACCGACGATTCTCGTAACGGAGAAGCTAGGCCAAGCGGGGATCG 240 || |||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 178 CC------GGAGGAAAACCGACTATTCTCGTGACGGAGAAGCTAGGCCAAGCGGGGATTG 231 Query 241 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 291 Query 301 GTACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACCAAGGTTGGGAGAG 360 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 292 GCACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACGAAGGTTGGGAGAG 351 Query 361 ATGTGTTTGAATCGTCGCGTGGGAGGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTG 420 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 352 ATGTGTTTGAATCATCGCGTGGGAGGCTTAAGGTTGTGGGACGCGCTGGTGTTGGGATTG 411 Query 421 ATAACGTCGATTTGGCGGCGGCGACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTG 480 |||| || ||||||||||| || || |||||||| ||||||||||| ||||||||||||| Sbjct 412 ATAATGTTGATTTGGCGGCTGCCACGGAGTATGGTTGTTTGGTTGTCAATGCTCCGACTG 471 Query 481 CGAACACTGTGGCTGCTGCTGAACACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACA 540 | ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 472 CTAACACGGTGGCTGCTGCTGAGCACGGGATTGCGCTTTTGACCGCCATGGCTAGAAATA 531 Query 541 TTGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAGTATGTAGGTG 600 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 532 TCGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAATATGTAGGTG 591 Query 601 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 651 Query 661 CTAGACGAGCCAGGGGACTTGGTATGCATGTCATTACACATGATCCTTATGCACCAGCGG 720 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 652 CTAGACGAGCCAGGGGACTAGGGATGCATGTCATTACACATGATCCTTATGCACCAGCGG 711 Query 721 ATCGTGCACGAGCTATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCTG 780 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 712 ATCGTGCACGAGCCATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCAG 771 Query 781 ACTTCATCTCTTTGCATCTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 840 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 772 ACTTCATCTCTTTGCATTTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 831 Query 841 CCTTTGCGATGATGAAGAAAGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTG 900 ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 832 CCTTTTCGATGATGAAGAAAGGAGTGCGTATTGTCAATGTTGCTCGTGGTGGAGTTATTG 891 Query 901 ATGAGGAAGCTCTTTTGAGAGCGCTTGACTCGGGTATTGTTGCTCAGGCAGCTCTTGATG 960 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 892 ATGAGGAAGCTCTTTTGAGAGCGCTTGATTTGGGTATTGTTGCTCAGGCAGCTCTTGATG 951 Query 961 TTTTTACAGTAGAGCCACCTGTTAAAGATAATAAGTTGGTGTTACATGAGAGTGTCACTG 1020 |||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||| Sbjct 952 TTTTCACAGTGGAGCCACCTGTTAAAGACAATAAGTTGGTGCTACATGAGAGTGTTACTG 1011 Query 1021 CCACACCTCATCTTGGTGCTAGTACTATGGAGGCTCAGGAAGGAGTGTCTATCGAAGTCG 1080 |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1012 CCACGCCTCATCTTGGTGCTAGTACCATGGAGGCTCAGGAAGGAGTGGCTATCGAAGTCG 1071 Query 1081 CAGAAGCTGTTATTGGAGCTTTGAGAGGAGAACTTGCTGCTACCGCGGTCAATGCACCAA 1140 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct 1072 CAGAAGCTGTTATTGGTGCTTTGAGAGGAGAACTTGCTGCTACGGCTGTCAATGCACCGA 1131 Query 1141 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAGCCGTATGTTGTACTTGCTGAGAAGCTTG 1200 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1132 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAACCGTATGTTGTGCTTGCTGAGAAGCTTG 1191 Query 1201 GGAGGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1260 | |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1192 GTAGGCTGGCTGTACAATTGGTTACCGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1251 Query 1261 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1252 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGTGCCATGGTCATAA 1311 Query 1321 AGGGGA-TCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCCGATTATATT 1379 | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1312 A-AGGACTCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCTGATTACATT 1370 Query 1380 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGACGGCTCACCTGAG 1439 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1371 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGATGGCTCACCCGAG 1430 Query 1440 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTTGCCAGCGCT 1499 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1431 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTCGCCAGCGCG 1490 Query 1500 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGCAGAGTGAAACAAGGGGTTCCAAGTCTT 1559 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1491 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGAAGGGTGAAACAAGGGGTTCCAAGTCTA 1550 Query 1560 ACCAAAGTCGGATTATTTGGAGTGGATGTGAGTTTAGAAGGGAGTGTGATTCTGTGCAGG 1619 |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1551 ACCAAAGTGGGCTTATTTGGAGTGGATGTGAGTCTAGAAGGGAGTGTGATTCTGTGCAGG 1610 Query 1620 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTC 1679 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1611 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTG 1670 Query 1680 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCTGTGATGGCAATT 1739 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1671 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCGGTAATGGCAATT 1730 Query 1740 GGAGTAGATGAACAACCAAGCAAAGAAACTTTGAAGAAAATCGGAGACATTCCTGCCATT 1799 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1731 GGAGTAGATGAACAACCAAGCAAAGAAACTTTAAAGAAAATCGGAGACATTCCTGCCATT 1790 Query 1800 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1850 Query 1860 ACTCAGAGATCGATATAATCTTAAATGATGATTTATTCTGTACTAATGATACAA-TCGAG 1918 |||| || || || ||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1851 ACTC-GAAATAGACATAATCTTAAATGATTATTTATTCTGTACTAATGATACAAATCGAG 1909 Query 1919 TGTACATGAAACAAATTACATAGTTGATTTTTT 1951 |||||||||||||||||||| |||||||||||| Sbjct 1910 TGTACATGAAACAAATTACACAGTTGATTTTTT 1942 > Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396 Length=1809 Score = 1033 bits (559), Expect = 0.0 Identities = 1353/1725 (78%), Gaps = 100/1725 (6%) Strand=Plus/Plus Query 152 ACGGATCATCCTCGTTACGT-CTTCTTCTTCCGGAGGTGGAGGAAAACCGA-CGATTCTC 209 |||| | |||||||| |||| | || || |||||| |||| ||||| | || ||||| Sbjct 135 ACGGCTTATCCTCGTGACGTGC-ACTGCTACCGGAGACGGAGCTAAACCAACCG-TTCTC 192 Query 210 GTAACGGAGAAGCTAGGCCAAGC-GGGGATCGATCTGCTTAAGAAGTACGCTAATGTGGA 268 ||| |||||||||| || |||| || | || | || ||| |||| | ||| || || || Sbjct 193 GTAGCGGAGAAGCTCGGAGAAGCTGGAGTTC-AGCTACTTGAGAAATTCGCAAACGTCGA 251 Query 269 TTGCTCTTATGATC-TGAGTCTC-GAGGAGCTTTGTACGAAGATCTCTCTTTGTGATGCG 326 ||| |||||| | | ||| || | |||||||| ||||||||||| || ||||||||| Sbjct 252 TTGTTCTTAT-AACTTGACTC-CAGAGGAGCTAAACACGAAGATCTCACTATGTGATGCG 309 Query 327 CTCATCGTCAGGAGTG-GTACCAAGGTTGGGAGAGATGTGTTTGAATCGTCGCGTGGGA- 384 | || || || |||| | || ||||| || | ||||||||||||||||| ||| ||| Sbjct 310 TTGATTGTGAGAAGTGCG-ACGAAGGTAGGTCGTGATGTGTTTGAATCGTCTCGT-GGAC 367 Query 385 GGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTGATAACGTCGAT-TTGGCGGCGGCG 443 ||||||||||||||||| | ||||||||||||||||||||||| ||| | | || ||| Sbjct 368 GGCTTAAGGTTGTTGGAAGAGCTGGTGTTGGGATTGATAACGTAGATCTAAG-TGCTGCG 426 Query 444 ACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTGCGAACACTGTGGCTGCTGCTGAA 503 || |||| ||| ||||||||||||||||||||||||||||| ||| | || || |||||| Sbjct 427 ACGGAGTTTGGTTGTTTGGTTGTTAATGCTCCGACTGCGAATACTATCGCCGCCGCTGAA 486 Query 504 CACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACATTGCTCAAGCTGATGCTTCTATC 563 || || ||||| ||| || | || ||||||||||| || ||||||||||||||||| | Sbjct 487 CATGGGATTGCACTTATGGCTGCTATGGCTAGAAATGTTTCTCAAGCTGATGCTTCTGTT 546 Query 564 AAAGCTGGCA-AATGGACGAGAAACAAGTATGTAGGTGTTTCACTTGTGGGGAAGACTCT 622 |||||||| | |||||| || || |||||||| ||||| ||||| ||||||||||| | Sbjct 547 AAAGCTGG-AGAATGGAAAAGGAATAAGTATGTTGGTGTATCACTAGTGGGGAAGACA-T 604 Query 623 T-GCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTGCTAGACGAGCCAGGGGACTTG 681 | ||||| | || ||||| ||||||||||| || |||||| ||||||| | ||||||| Sbjct 605 TAGCTGTGATGGGATTTGGGAAAGTTGGATCTGAAGTTGCTCGACGAGCTAAAGGACTTG 664 Query 682 GTATGCATGTCATTACACATGATCCTTATGCACCAGCGGATCGTGCACGA-GCTATTGGT 740 |||||| ||| ||| | |||||||||||||| || ||||||||||| | | ||||||||| Sbjct 665 GTATGCGTGTTATTGCTCATGATCCTTATGCGCCTGCGGATCGTGCTC-ATGCTATTGGT 723 Query 741 GTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTGCTGACTTCATCTCTTTGCATCT 799 ||||| || || || ||||| | ||| |||| |||||||| ||||| ||||| ||| | Sbjct 724 GTGGAT-TTAGTGAGCTTTGATGAAGCGCTTTCGACTGCTGATTTCATTTCTTTACATAT 782 Query 800 GCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGACCTTTGCGATGATGAAGAA 859 ||||||||| ||||||||||||||||| | || |||| || ||||||| ||||||||| Sbjct 783 GCCTCTTACACCTGCTACTTCGAAGATGCTTAACGATGAAACGTTTGCGAAGATGAAGAA 842 Query 860 AGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTGATGAGGAAGCTCTT--TTG 917 ||| || | |||||||||||||||||||| || ||||||||||| || || || || Sbjct 843 AGGGGTGAGGATTGTTAATGTTGCTCGTGGAGGTGTTATTGATGAAGATGCG-TTGGTT- 900 Query 918 AGAGCGCTT-GACTCG-GGTATTGTTGCTCAGGCAGCTCTTGATGTTTTTAC-AGTAGAG 974 ||||| || || | | ||||||||||||||||| ||||||||||||||||| | |||| Sbjct 901 AGAGCT-TTAGA-TGGTGGTATTGTTGCTCAGGCTGCTCTTGATGTTTTTACTAA-AGAG 957 Query 975 CCACCTGTTAAAGATAATAAGTTGGTGTTA-CATGAGAGTGTCACTGCCACACCTCATCT 1033 || || | ||| |||| |||||||||| | |||||||| || || | ||||||||||| Sbjct 958 CCGCCGGCTAAGGATAGTAAGTTGGTGC-AGCATGAGAGGGTTACAGTTACACCTCATCT 1016 Query 1034 TGGTGCTAGTACTATGGAGGCTCAGGAAGGAGT-GTCTATCGA-AGTCGCAGAAGCTGTT 1091 ||| || |||||||||||||||||||||||||| | |||| || | | |||||||||||| Sbjct 1017 TGGAGCAAGTACTATGGAGGCTCAGGAAGGAGTAG-CTATTGAGATT-GCAGAAGCTGTT 1074 Query 1092 ATTGGAGCT-TTGAGAGGAGAACTTGCTGCTACCGCGGTCAATGCACCAATGGTTCCA-C 1149 |||||||| || | ||||| |||||| |||| || || |||||||| |||||| | | Sbjct 1075 GTTGGAGCTCTTAAT-GGAGAGCTTGCTTCTACTGCTGTAAATGCACCTATGGTTTCTGC 1133 Query 1150 TAGAGGTAT-T-GAGGGAGCTGAAGCCGTATGTTGTACTTG-CTGAG-AAGCTTGGG-AG 1204 | ||||| | | | || ||||||| || ||||| || ||| | ||| || ||||| || Sbjct 1134 T-GAGGT-TCTCGCGG-AGCTGAAACCATATGTGGTG-TTGGCGGAGCAA--TTGGGGAG 1187 Query 1205 GCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATG--CTGTGAAAGTGACTTAT 1262 |||||||| |||||||| |||| |||||||||||||| | | ||||||||||| || Sbjct 1188 ACTGGCTGTCCAATTGGTGGCTGGAGGAAGCGGTGTGAA-GAAC-GTGAAAGTGACCTAC 1245 Query 1263 GCTTCTTC-CAGAGCTC-CTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320 ||||| | | |||| | |||| ||||| ||||||||||||||| |||||||| | | | Sbjct 1246 GCTTCGGCTC-GAGC-CACTGACGATCTTGACACTAGACTTCTCAGAGCCATGATTACGA 1303 Query 1321 AGGGGATCATCGAACCCATTTCC-A-GCGTATTCATAAATCTGGTTAACTCCGATTATAT 1378 |||| ||||| || || || ||| | | |||| |||| || || ||| | ||||| | Sbjct 1304 AGGGTATCATTGAGCCAATCTCCGACGTGTATG--TAAACCTTGTCAACGCGGATTACAC 1361 Query 1379 TGCCAAACA-ACGTGG-AGTCAAAATCTCAGAAGAACGTATGGT-TC-TAGACGGCTCAC 1434 || ||||| | | || | | | ||||||||| ||||| ||| || | ||||| |||| Sbjct 1362 AGCAAAACAGA-GAGGTA-TGAGAATCTCAGAGGAACGG--GGTGTCCTTGACGGTTCAC 1417 Query 1435 CTGAGAATCCAATTGAATAC-ATAACTGTTCGGATAG-CAAACGTGGAATC-AAGATTTG 1491 | |||| ||| | || || || || |||| | ||| ||| ||| || || || ||| | Sbjct 1418 CAGAGAGCCCACTCGAG-ACCATCACGGTTCAGCTAGGCAA-CGTAGAGTCCAA-ATTCG 1474 Query 1492 CCAGCGCTTTATCAGAGTCCGGTGA-GATCAAAGTAGAAGGCAGAGTGAAACAAGGGGTT 1550 ||||||| ||||| || || || || | ||||||| ||||| ||||| ||| | |||||| Sbjct 1475 CCAGCGCCTTATCTGAATCTGGAGAAG-TCAAAGTTGAAGGAAGAGTTAAAGATGGGGTT 1533 Query 1551 CCA-AGTCTT-ACCAAAG-TCGGATTATTTGGA-GTGGATGTGAGT-TTAGAAGGGAGTG 1605 || | | || || |||| | || || ||| || || ||||||||| || ||||| ||| Sbjct 1534 CCCCA-T-TTGAC-AAAGGTGGG-TTCTTTTGAAGTAGATGTGAGTCTT-GAAGGAAGTA 1588 Query 1606 TGATTCTGTGCAGGCAAGTAGATCAGCCTGGG-ATGATCGGTAAAGTTGCTAGCATCTTA 1664 | || ||||| |||||||||||||| || ||| |||||||| | || | || ||||| Sbjct 1589 TAATACTGTGTAGGCAAGTAGATCAACC-GGGCATGATCGGGACTGTCGGAAGAATCTTG 1647 Query 1665 GGAGA-TGAAAACGTCAACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCC-AGGCAAGC 1722 ||||| | ||| || || || || |||||||| || || ||||||| || ||| |||| Sbjct 1648 GGAGAGTCAAAT-GTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCGCCGAGG-AAGC 1705 Query 1723 AAGCTGTGATGGCAATTGGAGTAGATGAACAA-CCAAGCAAAGAAACTTTGAAGAAAATC 1781 |||| || ||||||||||| || ||||| || || |||||||| ||| ||||||||||| Sbjct 1706 AAGCAGTTATGGCAATTGGTGTTGATGA-CATGCCGAGCAAAGACACTCTGAAGAAAATC 1764 Query 1782 GGAGACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1826 || || ||||| ||| | || |||||||| |||||||| |||||| Sbjct 1765 GGTGAAATTCCGGCCGTGGAGGAGTTTGTGTTCCTCAAGCTATAG 1809 > Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1 Length=2029 Score = 848 bits (459), Expect = 0.0 Identities = 1206/1560 (77%), Gaps = 78/1560 (5%) Strand=Plus/Plus Query 306 AAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACCAAGGTTGGGAGAGATGTG 365 |||||||| || ||||||||| | ||||| |||||||| || |||||||| | || ||| Sbjct 360 AAGATCTCGCTATGTGATGCGTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTG 419 Query 366 TTTGAATCGTCGCGTGGGA-GGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTGATAA 424 ||||||||||| || ||| |||| ||||||||||||||||||||||||||||| || || Sbjct 420 TTTGAATCGTCTCG-CGGACGGCTCAAGGTTGTTGGACGCGCTGGTGTTGGGATCGACAA 478 Query 425 CGTCGATTTG-GCGGCGGCGACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTGCGA 483 ||| ||| || | | | ||||| |||| ||||||||||||||| || |||||||| |||| Sbjct 479 CGTGGATCTGAGTG-CAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGA 537 Query 484 ACACTG-TGGCTGCTGCTGAACACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACATT 542 |||| | | ||||||||||| |||||||| || ||| || | ||||||||||| ||| || Sbjct 538 ACAC-GATCGCTGCTGCTGAGCACGGAATCGCTCTTATGGCGGCCATGGCTAGGAACGTT 596 Query 543 GCTCAAGCTGATGCTTCTATCAAAGCTGGCAAA-TGGACGAGAAACAAGTATGTAGGTGT 601 |||||||||||||| ||| | || ||||| | | |||| ||| ||||||||||| ||||| Sbjct 597 GCTCAAGCTGATGCGTCTGTGAAGGCTGG-AGAGTGGAAGAGGAACAAGTATGTGGGTGT 655 Query 602 TTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTT-GGTAAAGTTGG-ATCAGAGGTT 659 |||||||||||| ||||| ||||| || |||| || || |||||||| | | || ||| Sbjct 656 TTCACTTGTGGGCAAGACCCTTGCAGTG-TTGGGATTCGGGAAAGTTGGGA-CGGAAGTT 713 Query 660 GCTAGACGAGCCAGGGGACTTGGTATGCATGTCATTACACATGATCCTTATGCACCAGCG 719 |||||||| |||| ||| |||||||||| ||||||| | |||||||| ||||| ||||| Sbjct 714 GCTAGACGTGCCAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCA 773 Query 720 GATCGTGCACGA-GCTATTGGTGTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTG 777 || ||||||| | || |||||||| || ||| || || ||||| | ||| || | || | Sbjct 774 GACCGTGCAC-ACGCCATTGGTGTTGA-CTTAGTGAGCTTTGATGAAGCCCTTGCGACCG 831 Query 778 CTGACTTCATCTCTTTGCATC-TGCCTCTTACTGCTG-CTACTTCGAAGATGA-TGAATG 834 | || ||||| ||| |||| | |||||||||| || | || |||||||| | | || | Sbjct 832 CGGATTTCATTTCTCTGCA-CATGCCTCTTAC-GCCAACAACATCGAAGAT-ACTCAACG 888 Query 835 ATGTGACCTTTGCGATGATGAAGAAAGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAG 894 | | |||||||| | |||||||||||||| || ||||| |||||||||||||| || | Sbjct 889 ACGAAACCTTTGCCAAAATGAAGAAAGGAGTTCGCATTGTCAATGTTGCTCGTGGAGGTG 948 Query 895 TTATTGATGAGGAAGCTCTTT-TGAGAGCGCTTGACTCGGGTATTGTTGCTCAGGCAGCT 953 | || || || || || || ||||||| || || || || |||||||||||||| || Sbjct 949 TCATAGACGAAGATGCG-TTAGTGAGAGCTCTGGATTCTGGCATTGTTGCTCAGGCTGCA 1007 Query 954 CTTGATGTTTTTAC-AGTAGAGCCACCTGTTAAAGATAATAAGTTGGTGTTA-CATGAGA 1011 |||||||| || || | |||||| || | |||||||| ||| | ||| | || |||| Sbjct 1008 CTTGATGTCTTCACCAA-AGAGCCGCCGGCTAAAGATAGCAAGCTCGTGC-AGCACGAGA 1065 Query 1012 GTGTCACTGCCACACCTCATCTTGGTGCTAGTACTATGGAGGCTCAGGAAGGAGT-GTCT 1070 | ||||||| || ||||||||||| || ||||| |||||||| ||||||||||| | | Sbjct 1066 GGGTCACTGTGACTCCTCATCTTGGAGCCAGTACCATGGAGGCGCAGGAAGGAGTTGCC- 1124 Query 1071 ATCGAAGTCGCAGAAGCTGTTATTGGAGCTTTGAGA-GGAGAACTTGCTGCTACCGCGGT 1129 |||||| | || ||||||||| |||||||| ||| | ||||| ||||||||||| || || Sbjct 1125 ATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGA-ATGGAGAGCTTGCTGCTACAGCTGT 1183 Query 1130 CAATGCACCAATGGTTCCA-CTAGAGGTAT-TGAGGGAGCTGAAGCCGTATGTTGTACTT 1187 ||||||||| |||||| | || ||||| | | | ||| |||| || ||||| ||||| Sbjct 1184 CAATGCACCTATGGTTTCTGCT-GAGGT-TCTAACCGAGTTGAAACCATATGTGGTACTA 1241 Query 1188 GCTGAGAAGCTTGGGAGGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATG-C 1246 || ||||| || || || ||||| || |||||||| | || |||||||||||||| | Sbjct 1242 GCCGAGAAACTAGGAAGACTGGCAGTGCAATTGGTGGCCGGAGGAAGCGGTGTGAAAAAC 1301 Query 1247 TGTGAAAGTGACTTATGCTTCTTCCAGAGCTC-CTGATGATCTCGACACTAGACTTCTCC 1305 |||||| | || || || || | ||||| | |||||||||| ||||| |||||||| | Sbjct 1302 -GTGAAAATCACATACGCCTCAGCAAGAGC-CACTGATGATCTTGACACCAGACTTCTAC 1359 Query 1306 GAGCCATGGTCATAAAGGGGATCATCGAACCCATTTCC-AGCGTAT-TCATAAATCTGGT 1363 |||||||| ||| ||||| || ||||| || || || | ||| | | | ||| |||| Sbjct 1360 GAGCCATGATCACCAAGGGAATTATCGAGCCAATCTCTGA-CGTCTATG-TCAATTTGGT 1417 Query 1364 TAACTCCGATTAT-ATTGCCAAACA-ACGTGGAGTCAAAATCTCAGAAGAACGTATGGTT 1421 ||| | |||| | | ||||| || | | || | | | ||||||| |||||| || | Sbjct 1418 CAACGCTGATT-TCACAGCCAAGCAGA-GAGGTCTTAGACTCTCAGAGGAACGTGTGCT- 1474 Query 1422 CTAG-ACGGCTCACCTGAGAATCCAATTGAATACA-TAACTGTTCGGATA-GCAAACGTG 1478 || | | || ||||| |||| || ||| | ||| ||||||||| | || |||| ||| Sbjct 1475 CTTGGATGGTTCACCAGAGAGCCCG-TTGGAGACAATAACTGTTCAGCTAAGCAAT-GTG 1532 Query 1479 GAATC-AAGATTTGCCAGCGCTTTATCAGAGTCCGGTGAGATCAAAGTAGAAGGCAGAGT 1537 || || || ||| ||||| | || || || || || ||| ||||||| ||||| || || Sbjct 1533 GAGTCTAA-ATTCGCCAGTTCGTTGTCTGAATCAGGAGAGGTCAAAGTGGAAGGAAGGGT 1591 Query 1538 GAAACAAGGGGTTCCA-AGTCTT-ACCAAAG-TCGGAT-TATTTGGAG-TGGATGTGAGT 1592 ||| | || || ||| | | || || |||| | |||| | |||| || | ||||| | | Sbjct 1592 TAAAGACGGAGTCCCACA-T-TTGAC-AAAGGTTGGATCT-TTTG-AGGTCGATGTAACT 1646 Query 1593 -TTAGAAGGGAGTGTGATTCTGTGCAGGCAAGTAGATCAGCCTGGGATGATCGGTAAAGT 1651 || ||||| ||| | || ||||||||||| || ||||| ||||| |||||||| | ||| Sbjct 1647 CTT-GAAGGTAGTATCATACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACAGT 1705 Query 1652 TGCTAGCATC-TTAGGAGA-TGAAAACGTCAACGTGAGCTTCATGAGCGTCGGTCGAATC 1709 | |||||| || ||||| | || || || || | |||||||||||| || | || Sbjct 1706 CGGAAGCATCCTT-GGAGAGTCTAAT-GTGAATGTTAACTTCATGAGCGTTGGGAGGATT 1763 Query 1710 GCTCC-AGGCAAGCAAGCTG-TGATGGCAATTGGAGTAGATGAACA-ACCAAGCAAAGAA 1766 || || ||| |||||||| | | ||||| || ||||||||||| || |||||||||||| Sbjct 1764 GCACCGAGG-AAGCAAGC-GATTATGGCTATCGGAGTAGATGA-CATACCAAGCAAAGAT 1820 Query 1767 ACTTTGAAGAAAATCGGAGACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1826 || ||||||| || || || ||||| || ||||| ||||| ||||||||||| || ||| Sbjct 1821 ACACTGAAGAAGATTGGGGAAATTCCAGCGATTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1880 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73704624075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5