BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19830.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479501 jgi|Araly1|479501|fgenesh2_kg.3__2202__AT3G19830.1 3653 0.0
Ahg914129 jgi|Araly1|914129|Al_scaffold_0001_4383 1604 0.0
> Ahg479501 jgi|Araly1|479501|fgenesh2_kg.3__2202__AT3G19830.1
Length=2322
Score = 3653 bits (1978), Expect = 0.0
Identities = 2221/2336 (95%), Gaps = 25/2336 (1%)
Strand=Plus/Plus
Query 91 ATGATTCTACAGTCTTCTTCTTCTTGTTCTAGTTTCGATTTCCCTTCTTTTGTGTCACGT 150
|||||||| || ||||| | |||||||||| |||||||||||||||||||||| |||||
Sbjct 1 ATGATTCTTCAATCTTC--C-TCTTGTTCTACTTTCGATTTCCCTTCTTTTGTGCCACGT 57
Query 151 CGTCTGCTCTGTCCTTGCTCCAATGAGCACGGTCTGATTGTGTTCTCCGATGGATTCACA 210
||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 58 CGTTTGCTCTGCCCTTGCTCCAATGAGCACGCTCTGATTGTGTTCTGCGATGGATTCGCG 117
Query 211 AAGAGGCGGAGAATTCTCCGTCGAGTTCATGCGGCGAATTCGAATTCTAGGTTTGTTTCC 270
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 118 AAGAGGCGGAGAATTCTCCGTCGAGTTCAGGCGGCGAATGCGAATTCTAGGTTTGTTTCC 177
Query 271 AGCGGAATTCGTACGGATTCCAAGAACATTGGATTAGCGGATTCGGCGAGAAGAGCTGCC 330
|||||||| ||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 178 AGCGGAATCCGTACGGATTCCATGAACATTGGATT-----A----GCGAGAAGAGCTGCA 228
Query 331 AGAAGTCTTGTGGTTACTCGGTTTTCGAATGAATTTGAGGATGAAGAAGCATCTTCATCT 390
|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 229 AGAAGTCTTGTGGTTACTCGTTTTTCGAATGAATTCGAGGATGAAGAAGAATCTTCATCT 288
Query 391 TCACAGGAGTCTGCAATTCAAGGTGATAGAAACAATTTCACTAACTTTAGAGAAGATCCT 450
||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 289 TCACAGGAGTCTGTAATTCAGGGTGATCGAAACAGTTTCACTAACTTTAGAGAAGATCCG 348
Query 451 ATAGTGGATAAGCTCAGGACTCAGCTAGGTGTAATCCACCCAATCCCGTCTCCACCGATT 510
|| |||||||||||||||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 349 ATTGTGGATAAGCTCAGGACTCACCTAGGTGTAATCCATCCAATCCCCTCGCCACCAATT 408
Query 511 AGTCGTAATGCAATTGGTCTATTCGCATTCTTCTTCTTTGTTGGTGTTATTTGTGATAAG 570
||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 409 AGTCGTAATGCGATTGGTTTATTCGCCTTCTTCTTCTTTGTTGGTGTTATTTGTGACAAG 468
Query 571 CTATGGACTTGGAGAAAGAGGCGGAGACAAATG-GCTGGTGAT---GGAGGCCAAAGAGG 626
||||||||||||||||||||||||||||||| | | ||||||| ||||||||| ||||
Sbjct 469 CTATGGACTTGGAGAAAGAGGCGGAGACAAACGAG-TGGTGATGAGGGAGGCCAACGAGG 527
Query 627 AGCCGGGCCATGGGCACAGGTTCCCACCAGTTTCTCGCTGTCCCTTGAGAAGGATTTGCA 686
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 528 AGCCGGGCCATGGGCACAAGTTCCCACCAGCTTCTCGCTGTCCCTTGAGAAGGACTTGCA 587
Query 687 AAGGAAAGAGTCGGTGGAGTGGGTGAACATGGTGTTGGTTAAGCTCTGGAAAGTTTATAG 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AAGGAAAGAGTCAGTGGAGTGGGTGAACATGGTGTTGGTTAAGCTCTGGAAAGTTTATAG 647
Query 747 AGGTGGGATTGAGAATTGGCTTGTTGGATTGTTGCAGCCTGTGATTGATGATTTGAAGAA 806
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 648 AGGTGGGATTGAGAATTGGCTTGTTGGATTGTTGCAGCCTGTCATTGATGACTTGAAGAA 707
Query 807 GCCTGATTATGTGCAGAGAGTTGAAATTAAGCAATTCTCTCTTGGGGATGAGCCTTTGTC 866
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 708 GCCAGATTATGTGCAGAGAGTTGAAATTAAGCAATTCTCTCTTGGAGATGAGCCTTTGTC 767
Query 867 TGTTAGAAATGTTGAGAGGAGGACATCTCGCCGTGTTAATGACTTGCAGTACCAGATTGG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TGTTAGAAATGTTGAGAGGAGGACATCTCGCCGTGTTAATGACTTGCAGTACCAGATTGG 827
Query 927 TCTTCGGTATACTGGTGGTGCTCGGATGTTGTTAATGCTCTCTTTAAAATTTGGTATCAT 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCTTCGGTATACTGGTGGTGCTCGGATGTTGTTAATGCTCTCTTTAAAATTTGGTATCAT 887
Query 987 CCCAGTAGTTGTGCCAGTTGGTATTCGGGATTTTGACATTGACGGTGAACTATGGGTTAA 1046
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 888 CCCAGTAGTCGTGCCAGTAGGTATTCGGGATTTTGACATTGACGGTGAGCTATGGGTTAA 947
Query 1047 ATTAAGATTGATTCCGTCAGCGCCTTGGGTTGGAGCAGCATCATGGGCGTTTGTTTCACT 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 948 ATTAAGATTGATTCCGTCAGCGCCTTGGGTTGGAGCAGCATCATGGGCGTTTGTATCACT 1007
Query 1107 TCCAAAGATCAAATTTGAGCTTGCACCATTCCGATTGTTTAATCTAATGGGAATTCCTGT 1166
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1008 TCCAAAGATCAAATTTGAGCTTGCTCCATTCCGATTGTTTAATCTAATGGGAATTCCTGT 1067
Query 1167 TTTATCAATGTTCTTGACCAAACTACTGACAGAAGATTTGCCTCGATTATTTGTACGCCC 1226
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1068 GTTATCAATGTTCTTGACCAAACTGCTGACAGAAGATTTGCCTCGATTATTTGTCCGCCC 1127
Query 1227 AAAGAAAATTGTCTTGGATTTCCAGAAGGGAAAAGCTGTTGGGCCTGTTTCAGAAGACTT 1286
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1128 CAAGAAAATTGTCTTGGATTTCCAGAAAGGAAAAGCTGTTGGGCCTGTTTCAGAAGACTT 1187
Query 1287 AAAATCTGGAGAAATGCAGGAAGGGAACAAGGATTTTGTAGGGGAACTGTCTGTTACTCT 1346
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1188 AAAATCTGGAGAAATGCAGGAAGGGAACAAGGATTTTGTAGGGGAGCTGTCTGTTACTCT 1247
Query 1347 TGTAAATGCCCAGAAACTTCCATACATGTTCTCTGGTAGAACGGATCCATATGTTATTTT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TGTAAATGCCCAGAAACTTCCATACATGTTCTCTGGTAGAACGGATCCATATGTTATTTT 1307
Query 1407 ACGAATAGGTGATCAAGTTATCCGCAGTAAGAAGAACAGTCAAACTACTGTGATTGGGGC 1466
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1308 ACGAATAGGTGATCAAGTTATCCGCAGTAAGAAGAACAGTCAAACTACTGTGTTTGGTGC 1367
Query 1467 TCCTGGTCAGCCAATCTGGAACCAGGACTTCCAATTCCTTGTGTCAAATCCTAGAGAGCA 1526
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1368 TCCTGGTCAGCCAATCTGGAATCAGGACTTCCAATTCCTTGTTTCAAATCCTAGAGAGCA 1427
Query 1527 AGTATTACAAATTGAAGTCAACGACTGTCTTGGATTTGCCGATATGGCTATTGGTATCGG 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AGTATTACAAATTGAAGTCAACGACTGTCTTGGATTTGCCGATATGGCTATTGGTATCGG 1487
Query 1587 AGAGGTTGACCTTGAATCACTGCCAGATACGGTTCCTACAGACAGATTTGTTAGTTTACG 1646
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1488 AGAGGTTGACCTCGAATCACTGCCAGATACGGTTCCTACAGACAGATTCGTTAGTTTGCG 1547
Query 1647 AGGCGGTTGGAGTTTGTTCGGAAAGGGATCTACTGGAGAAATACTACTCCGGCTTACATA 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 AGGCGGTTGGAGTTTGTTCGGAAAGGGATCTACTGGAGAAATACTACTCCGGCTTACATA 1607
Query 1707 CAAAGCATACGTGGAGGATGAAGAAGATGATAAACGCAACGCAAAAGCCATATATGCAGA 1766
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1608 CAAAGCATACGTGGAGGATGAAGAAGATGATAAACGCAACGCAAAAGCCATTTATGCAGA 1667
Query 1767 TGCTTCCGATGATGAAATGTCTGATTCGGAAGAACCTAGCTCATTTGTGCAGAATGACAA 1826
|||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1668 TGCTTCCGATGATGAATTGTCTGATTCTGAAGAACGTAGCTCATTTGTGCAGAATGACAA 1727
Query 1827 GATTCCTTCAGATGATATTGGTCAAGAGTCATTTATGAACGTGTTGTCTGCATTGATTTT 1886
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GATCCCTTCTGATGATATTGGTCAAGAGTCATTTATGAACGTGTTGTCTGCATTGATTTT 1787
Query 1887 GAGCGAGGAATTTCAAGGCATAGTTTCATCAGAAACTGGGAACAATAAAGTTGATGATGG 1946
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1788 GAGCGAGGAATTTCAAGGCATAGTTTCATCAGAAGCTGGGAACAGTAAAGTTGATGATGG 1847
Query 1947 TGAATCAAGCGTGTCACCTGTTCCTTCAATGTCTGGGGCGGACTCAGAATCTCGACCAAA 2006
||||||||||||||||||||||||||||| | ||||||| |||||| |||||| ||||||
Sbjct 1848 TGAATCAAGCGTGTCACCTGTTCCTTCAAAGGCTGGGGCAGACTCAAAATCTCAACCAAA 1907
Query 2007 AGATGCTGGCAATGGGGACGTATCAGATTTGGAAGTGAAAAATGCGAAATCTGATAGAGG 2066
||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||
Sbjct 1908 AGATGCTGGCAATGGGGACATATCAGATTTGGAAATGAAAAATGCGAATTCTGATAGAGG 1967
Query 2067 TTCTATTAATAATGGAGGATTAGCATTATTGTGGTTCGGTGTAATCACTTCTGTACTGGT 2126
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TTCTATTGATGATGGAGGATTAGCATTATTGTGGTTCGGTGTAATCACTTCTGTACTGGC 2027
Query 2127 GCTCGTTGCTATCAACATGGGCGGCTCAAGTTTCTTCAACCCGTGACATGGTGTTGTATG 2186
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2028 GCTCGTTGCTATCAACATGGGCGGCTCAAGTTTCTTCAACCCGTAACATGGTGTTGTATG 2087
Query 2187 GATAATTACGATTTCTTTTGCCAAAG-TTGGTTAATTTTCTCTTCTCGGCCTCAGAGATG 2245
|||| || ||||||||||||||| || ||| |||||||||||||||||||| ||||||||
Sbjct 2088 GATAGTTGCGATTTCTTTTGCCACAGGTTG-TTAATTTTCTCTTCTCGGCCACAGAGATG 2146
Query 2246 GCGTATAACGAGGTCTCAGTTTTGTGTTTACATTCTAGTGCTGTTGTATGCATTTAGAAG 2305
|| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2147 GCTTATTACGAGGTCTCAGTTTTGTGTTTACATTCTAATGCTGTTGTATGCATGTAGAAG 2206
Query 2306 AGGGGCGCTTATTGGCGGCAGAAAGTTTTAGGGTCCATTTCA----C-CC-AATCTCTTA 2359
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 2207 AGGGGCGCTTATTGGCGGCAGAAAGTTTTAGGGTCCATTTCATTTTCACCCAATCTCTTA 2266
Query 2360 CAACTGTGATCAACGTGTATACCAATGGTTTGTTATAGTACACGAATATTTTATTC 2415
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2267 CAACTGTGATCAACGTGTATACCAATGGTTTGTTATAGTACACGAAAATTTTATTC 2322
> Ahg914129 jgi|Araly1|914129|Al_scaffold_0001_4383
Length=2031
Score = 1604 bits (868), Expect = 0.0
Identities = 1351/1580 (86%), Gaps = 50/1580 (3%)
Strand=Plus/Plus
Query 389 CTTCACAGGAGTCTGC-AATTCAAGGTGA-TAGAAACAATT-TCACTAACTTTAGAGAAG 445
|||| || |||||| | ||||| | ||| | |||||||| | | ||| ||||| ||||
Sbjct 272 CTTCGCAAGAGTCT-CTGATTCATGATGACCA-AAACAATTAT-AGTAATTTTAGGGAAG 328
Query 446 ATCCTATAGTGGATAAGCTCAGGACTCAGCTAGGTGTAATCCACCCAATCCCGTCTCCAC 505
|||| |||||||||||||| ||||| || | ||||||||||| ||| | ||||| ||||
Sbjct 329 ATCCGATAGTGGATAAGCTTAGGACCCAATTGGGTGTAATCCATCCACTTCCGTCACCAC 388
Query 506 CGATTAGTCGTAATGCAATTGGTCTATTCG-CATTCTTCTTCTTT-GTTGGTGTT-ATTT 562
| | | ||||| || ||||||||||||| | |||||||| ||| ||||||||| |||
Sbjct 389 CCCTAAATCGTACTGTGATTGGTCTATTCGTC-TTCTTCTT-TTTCGTTGGTGTTGCTTT 446
Query 563 GTGATAAGCTATGGACTTGGAGAAAGAGGCGGAGACAAATGGCTGGTGATGGAGGCCAAA 622
||||||||||||||| | ||||||||| || ||| |||||||| ||||
Sbjct 447 -TGATAAGCTATGGAC------------GTGGAGACAAACGGGTGGAGATGGAGGGCAAA 493
Query 623 GAGGAGCCGGGCCATGGGCACAGGTTCCCACCAGTTTCTCGCTGTCCCTTGAGAAGGATT 682
||||| ||||||||| |||||||||||||||| ||||| ||| ||| |||||||| |
Sbjct 494 GAGGATTAGGGCCATGGCCACAGGTTCCCACCAGCTTCTCTTTGTTCCTAGAGAAGGACT 553
Query 683 TGCAAAGGAAAGAGTCGGTGGAGTGGGTGAACATGGTGTTGGTTAAGCTCTGGAAAGTTT 742
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 554 TGCAAAGGAAAGAGTCGGTGGAGTGGGTCAACATGGTGTTGGGGAAGCTCTGGAAAGTGT 613
Query 743 ATAGAGGTGGGATTGAGAATTGGCTTGTTGGATTGTTGCAGCCTGTGATTGATGATTTGA 802
|||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 614 ATAGAGCTGGGATTGAGAATTGGCTCGTTGGTTTGTTGCAGCCAGTGATTGATGACTTGA 673
Query 803 AGAAGCCTGATTATGTGCAGAGAGTTGAAATTAAGCAATTCTCTCTT-GGGGATGAGCCT 861
||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||||
Sbjct 674 AGAAGCCTGATTATGTGCAGAGAGTTGAAATTAAGCAGTTTTCT-TTAGGGGATGAGCCT 732
Query 862 TTGTCTGTTAGAAATGTTGAGAGGAGGACATCTCGCCGTGTTAATGACTTGCAGTACCAG 921
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 733 TTGTCTGTCAGAAATGTTGAGAGGAGGACATCTCGCCGTGCCAATGACTTGCAGTACCAA 792
Query 922 ATTGGTCTTCGGTATACTGGTGGTGCTCGGATGTTGTTAATGCTCTCTTTAAAATTTGGT 981
||||| ||| |||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 793 ATTGGCCTTAGGTATACTGGTGGTGCCCGCATGTTGTTAATGCTCTCTTTGAAATTCGGA 852
Query 982 ATCATCCCAGTAGTTGTGCCAGTTGGTATTCGGGATTTTGACATTGACGGTGAACTATGG 1041
|| |||||| | ||||| ||||||||| | |||||||| |||||||| ||||| || |||
Sbjct 853 ATTATCCCAATCGTTGTTCCAGTTGGTGTCCGGGATTTCGACATTGATGGTGAGCTTTGG 912
Query 1042 GTTAAATTAAGATTGATTCCGTCAGC-GCCTTGGGTTGGAGCAGCATCATGGGCGTTTGT 1100
|| ||| |||||||||| ||| || | ||||||||| ||||| | |||||| |||||||
Sbjct 913 GTCAAACTAAGATTGATACCGACA-CAGCCTTGGGTGGGAGCTGTATCATGTTCGTTTGT 971
Query 1101 TTCACTTCCAAAGATCAAATTTGAGCTTGCACCATTCCGATTGTTTAATCTAATGGGAAT 1160
|||||||||||| ||| |||| | || ||| ||||| ||||||||| |||||||||||
Sbjct 972 ATCACTTCCAAAGGTCACATTTCAACTCGCAGCATTCATATTGTTTAACCTAATGGGAAT 1031
Query 1161 TCCTGTTTTATCAATGTTCTTGACCAAACTACTGACAGAAGATTTGCCTCGATTATTTGT 1220
||| ||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1032 TCCCGTTCTATCAATGTTCTTGACCAAACTGCTGACGGAGGATTTGCCTCGATTATTTGT 1091
Query 1221 ACGCCCAAAGAAAATTGTCTTGGATTTCCAGAAGGGAAAAGCTGTTGGGCCTGTTTCAGA 1280
|| ||||||||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1092 CCGACCAAAGAAAATTGTCTTGGATTTTCAAAAAGGAAAAGCTGTTGGCCCTGTTTCAGA 1151
Query 1281 AGACTTAAAATCTGGAGAAATGCAGGAAGGGAACAAGGATTTTGTAGGGGAACTGTCTGT 1340
|||| | ||||| || |||||||||||||| || || |||||||| |||||||| |||||
Sbjct 1152 AGACCTGAAATCAGGGGAAATGCAGGAAGGCAATAATGATTTTGTCGGGGAACTATCTGT 1211
Query 1341 TACTCTTGTAAATGCCCAGAAACTTCCATACATGTTCTCTGGTAGAACGGATCCATATGT 1400
|||||||||| | || ||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 1212 TACTCTTGTAGACGCTCAGAATCTTCGTTACATGTTCTCTGGTAAAACGGATCCATATGC 1271
Query 1401 TATT-TTACGAATAGGTGATCAAGTTATCCGCAGTAAGAA-GAACAGTCAAACTACTGTG 1458
||| | | || |||| |||||||||||||| |||| || ||||||||||||||||||
Sbjct 1272 AATTCTCA-GATTAGGGGATCAAGTTATCCGTGGTAA-AAGGAACAGTCAAACTACTGTC 1329
Query 1459 ATTGGGGCTCCTGGTCAGCCAATCTGGAACCAGGACTTCCAATTCCTTGTGTCAAATCCT 1518
||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct 1330 ATTGGGGCTCCTGGTCAGCCAATTTGGAATCAGGACTTTCAATTCCTTGTTTCAAATCCT 1389
Query 1519 AGAGAGCAAGTATTACAAATTGAAGTCAACGACT-GTCTTGGATTTGCCGATATGGCTAT 1577
||||||||| || |||||||||| ||||| || | ||||||| ||||| |||||||||||
Sbjct 1390 AGAGAGCAAATACTACAAATTGAGGTCAATGA-TCGTCTTGGGTTTGCTGATATGGCTAT 1448
Query 1578 TGGTATC-GGAGAGGTTGACCT-TGA-ATCACTGCCAGATACGGTTCCTACAGACAGATT 1634
||||| | ||||||||||| | | | || |||| |||||||||||||||||||||| |
Sbjct 1449 TGGTA-CTGGAGAGGTTGA--TATCAGATTTCTGCAAGATACGGTTCCTACAGACAGAAT 1505
Query 1635 TGTTAG-TTTACGAGGCGGTTGGAGTTTGTTCGGAAAGGGATCTACTGGAGAAATACTAC 1693
|| | | ||| || || |||||||||||||| |||||||||||| | || || ||||| |
Sbjct 1506 TG-TGGTTTTGCGTGGTGGTTGGAGTTTGTTTGGAAAGGGATCTGCGGGTGAGATACTGC 1564
Query 1694 TCCGGCTTACATACAAAGCATACGTGGAGGATGAAGAAGATGATAA-ACGCAACG-CAAA 1751
| |||||||||||||||||||| |||||||| ||||||||||| || || ||| | | ||
Sbjct 1565 TACGGCTTACATACAAAGCATATGTGGAGGAGGAAGAAGATGACAAGAC-CAATGTC-AA 1622
Query 1752 AGCCATAT-ATGCAGATGCTTCCGATGATGAAATGTCTGATTCGGAAGAACCTAGCTCAT 1810
|||||| | ||||||||||||| |||||||||||||||||||| |||| || | ||||||
Sbjct 1623 AGCCAT-TGATGCAGATGCTTCTGATGATGAAATGTCTGATTCAGAAGGACTTGGCTCAT 1681
Query 1811 TTGTGCAGAATGACAAGATTCCTTCAGATGATATTGGTCAAGAGTCATTTATGAACGTGT 1870
|||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTGTGCGGAATGAAAAGGTTTCTTCAGATGATATTGGTCAAGAGTCATTTATGAACGTGT 1741
Query 1871 TGTCTGCATTGATTTTGAGCGAGGAATTTCAAGGCATAGTTTCATCAGAAACTGG-GAAC 1929
||||||| |||||| |||| ||||| |||||||||||||||||||| ||| | || || |
Sbjct 1742 TGTCTGCTTTGATTGTGAGTGAGGAGTTTCAAGGCATAGTTTCATCTGAAGCCGGAGA-C 1800
Query 1930 AATAAAGTTGATGATGGTGA 1949
| |||| || || ||||||
Sbjct 1801 AGTAAAATTTCTGGTGGTGA 1820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5