BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19930.1
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929903 jgi|Araly1|929903|scaffold_302360.1 2693 0.0
Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202 265 1e-69
> Ahg929903 jgi|Araly1|929903|scaffold_302360.1
Length=1589
Score = 2693 bits (1458), Expect = 0.0
Identities = 1550/1594 (97%), Gaps = 7/1594 (0%)
Strand=Plus/Plus
Query 252 TTTG-TTTTTTAGCAAATCAAAGAAATGGCCGGAGGGTTCGTCAGTCAAACGCCGGGTGT 310
|||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTTGATTTTTT-GCAAATCGGAGAAATGGCCGGAGGATTCGTCAGTCAAACGCCGGGTGT 59
Query 311 TCGGAACTACAATTACAAACTGACACCGAAAGTGTTTGTGACATGTTTCATCGGTGCTTT 370
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TCGGAACTACAATTACAAACTGACACCGAAAGTGTTTGTAACATGTTTCATCGGTGCTTT 119
Query 371 TGGTGGTCTCATCTTCGGATACGATCTCGGGATCTCAGGAGGGGTAACCTCAATGGAGCC 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTGGTCTCATCTTCGGATACGATCTCGGGATCTCAGGAGGGGTAACCTCAATGGAGCC 179
Query 431 ATTCTTGGAAGAGTTCTTCCCTTACGTCTACAAGAAGATGAAGAGCGCACATGAGAACGA 490
|||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 180 ATTCTTGGAAGAGTTCTTCCCTGACGTCTACAAGAAGATGAAGAACGCACACGAGAACGA 239
Query 491 GTACTGTCGATTTGATAGTCAGCTTCTCACTCTCTTCACTTCGTCTCTCTATGTGGCGGC 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTACTGTCGATTTGATAGTGAGCTTCTCACTCTCTTCACTTCGTCTCTCTATGTGGCGGC 299
Query 551 TTTGGTGTCTTCTCTCTTTGCCTCCACCATTACTAGAGTTTTCGGAAGGAAATGGTCGAT 610
|||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 TTTGATATCTTCTCTCTTTGCCTCCACCATTACTCGAGTTTTCGGAAGGAAATGGTCGAT 359
Query 611 GTTTCTCGGTGGTTTCACCTTCTTCATCGGTTCTGCTTTCAACGGCTTTGCCCAAAACAT 670
||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 360 GTTCCTCGGTGGTTTCACCTTCTTTATCGGGTCTGCCTTCAACGGCTTTGCCCAAAACAT 419
Query 671 CGCTATGCTTCTCATTGGTCGTATCCTACTTGGTTTCGGAGTCGGATTCGCCAATCAATC 730
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 CGCTATGCTTCTCATTGGTCGTATTCTACTTGGTTTTGGAGTCGGATTCGCCAATCAATC 479
Query 731 TGTACCGGTTTATTTATCAGAAATGGCTCCTCCGAATCTAAGAGGAGCTTTCAACAACGG 790
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TGTACCGGTTTATTTATCAGAAATGGCTCCTCCGAATCTAAGAGGAGCTTTTAACAACGG 539
Query 791 GTTTCAAGTAGCGATTATCTTTGGTATTGTGGTTGCAACGATCATCAATTACTTCACCGC 850
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GTTTCAAGTAGCGATTATCTTTGGTATTGTTGTTGCAACGATCATCAATTACTTCACCGC 599
Query 851 ACAGATGAAAGGAAACATCGGATGGAGAATCTCTCTCGGAT-TAGCTTGTGTCCCTGCAG 909
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 600 ACAGATGAAAGGAAACATCGGATGGAGAATCTCTCTCGG-TCTAGCTTGTGTCCCTGCAG 658
Query 910 TGATGATCATGATCGGAGCTCTGATCCTTCCCGACACTCCCAACTCTCTCATCGAACGTG 969
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 TTATGATCATGATCGGAGCTCTGATCCTTCCCGACACTCCGAACTCTCTCATCGAACGTG 718
Query 970 GCTACACCGAAGAGGCCAAGGAAATGCTTCAGTCCATCCGAGGAACCAATGAAGTCGATG 1029
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCTACACCGAAGAGGCCAAGCAAATGCTTCAGTCCATCCGAGGAACCAATGAAGTCGATG 778
Query 1030 AAGAGTTTCAAGATCTCATTGATGCAAGTGAGGAGTCCAAGCAAGTGAAACACCCATGGA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGAGTTTCAAGATCTCATTGATGCAAGTGAGGAGTCCAAGCAAGTGAAACACCCATGGA 838
Query 1090 AGAACATCATGCTTCCTCGTTACAGACCACAATTGATCATGACTTGCTTCATTCCTTTCT 1149
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGAACATCTTGCTTCCTCGTTACAGACCACAATTGATCATGACTTGCTTCATTCCTTTCT 898
Query 1150 TTCAACAACTTACCGGAATCAATGTCATTACCTTCTACGCCCCGGTTTTGTTCCAAACCC 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTCAACAACTTACCGGAATCAATGTCATTACCTTCTACGCCCCGGTTTTGTTCCAAACCC 958
Query 1210 TCGGGTTCGGTAGCAAAGCTTCCCTCCTATCAGCTATGGTAACGGGTATCATCGAGCTCT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCGGGTTCGGTAGCAAAGCTTCCCTCCTATCAGCTATGGTAACGGGTATCATCGAGCTCT 1018
Query 1270 TGTGTACCTTCGTCTCTGTTTTTACAGTGGATAGGTTTGGAAGAAGAATCTTGTTCCTCC 1329
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 TGTGTACCTTCGTCTCTGTTTTTACAGTGGATAGGTTTGGAAGAAGAGTCTTGTTCCTCC 1078
Query 1330 AAGGAGGTATCCAGATGCTTGTCTCTCAGATCGCTATTGGAGCCATGATTGGAGTCAAAT 1389
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 AAGGAGGTATCCAGATGCTTATCTCTCAGATCGCTATTGGAGCCATGATTGGGGTCAAAT 1138
Query 1390 TTGGAGTGGCTGGAACAGGAAACATAGGGAAAAGTGATGCCAATCTAATCGTGGCACTGA 1449
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 TCGGAGTGGCTGGAACAGGAAACATAGGGAAATCAGATGCCAATCTAATCGTGGCACTGA 1198
Query 1450 TCTGCATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCGTTGGGATGGTTGGTTCCTA 1509
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 TCTGCATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCTTTGGGATGGTTGGTTCCTA 1258
Query 1510 GTGAGATATCTCCACTAGAGATCCGATCAGCAGCTCAAGCCATAAACGTTTCGGTCAACA 1569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTGAGATATCTCCACTAGAGATCCGATCAGCAGCTCAAGCCATAAACGTTTCGGTCAACA 1318
Query 1570 TGTTCTTCACATTCCTTGTGGCTCAGCTCTTCCTCACTATGCTTTGTCACATGAAATTCG 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGTTCTTCACATTCCTTGTGGCTCAGCTCTTCCTCACTATGCTTTGTCACATGAAATTCG 1378
Query 1630 GACTATTCTTCTTCTTCGCCTTCTTTGTTGTCATAATGACAATATTCATCTACTTGATGT 1689
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1379 GACTATTCTTCTTCTTCGCCTTCTTTGTGGTCATAATGACGGTATTCATCTACATGATGT 1438
Query 1690 TGCCTGAGACAAAGAATGTGCCAATCGAAGAGATGAACAGAGTGTGGAAGGCACATTGGT 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGCCTGAGACAAAGAATGTGCCAATCGAAGAGATGAACAGAGTGTGGAAGGCACATTGGT 1498
Query 1750 TCTGGGGAAAGTTTATTCCTGATGAAGCTGTCAATATGGGTGCTGCTGAGATGCAACAGA 1809
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1499 TCTGGGGAAAGTTTATTCCTGATGAAGCTGTTAACATGGGTGCTGCTGAGATGCAACAGA 1558
Query 1810 AGTCCGTATGATGATGATCAAGAATGAAGTTTTC 1843
||||||||||||||| ||||||||||||||||
Sbjct 1559 AGTCCGTATGATGAT---CAAGAATGAAGTTTTC 1589
> Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202
Length=1554
Score = 265 bits (143), Expect = 1e-69
Identities = 1048/1469 (71%), Gaps = 126/1469 (9%)
Strand=Plus/Plus
Query 372 GGTGGTCTCA-TCTTCGGATACGATC-TCGGGATCTCAGGAGGGGTAACCTCAATGGA-G 428
|||||||| | ||||||| ||||| | |||| ||||||||||| || || |||||||| |
Sbjct 103 GGTGGTCT-ACTCTTCGGTTACGA-CATCGGTATCTCAGGAGGAGTGACATCAATGGAGG 160
Query 429 CCATTCT-TGGAAGAGTTCTTCCCTTACGT-C-T--AC-AA-G-AAGATG-AAGAGCGCA 479
|||| ||| | |||||||| |||| | | | || | || | | || || |
Sbjct 161 AGTTTCTAACGAA-A-TTCTTCCCCGACGTGCTTCGTCAAATGCAAAACGAAACAG-G-G 216
Query 480 CATGAGAAC-GAGTACTGTCGATTTGATAGTCAGCTTCTCACTCTCTTCACTTCGTCTCT 538
| ||| ||| ||||||||| || ||||| | ||||||||||||| |||||||| |||||
Sbjct 217 CGTGA-AACAGAGTACTGTAAATATGATAATGAGCTTCTCACTCTTTTCACTTCCTCTCT 275
Query 539 CTATGTGGCGGCTTTGGT-GTCTTCTCTCTTTGCCTCCACCATTACTAGAG-TTTTCGGA 596
|| | || |||||| | | ||||| || |||| || |||||||| || | |||| ||
Sbjct 276 TTACCTCGCTGCTTTGTTCG-CTTCTTTCCTTGCATCGACCATTACAAG-GCTTTTTGGT 333
Query 597 AGGAAATGG--TCGATGTTTCTCGGTGGTTTCACCTTCT-TCATC-GGTTCTGCTT-TCA 651
|| || || || ||| |||| ||||| ||| | ||| | || || ||| |||
Sbjct 334 CGG-AA-GGTCTCAATGACGATCGGGGGTTT-TGCTTTTCTCA-CTGGAGCT-CTTCTCA 388
Query 652 ACGGCTTT-GCCCA-AAACATCGCTATGCTT-CTCATTGGTC-G-TATCCTACTTGGTTT 706
|||| ||| | | | ||| ||| ||| || |||| || | | ||| | || ||| |
Sbjct 389 ACGG-TTTAG-CTATCAACCTCGAGATG-TTGATCATCGGGCGGTTAT--TTCTCGGTGT 443
Query 707 CGGAGTCGGATTCGCCAATCAATCTGTACCGGTTTATTTATCAGAAATGGCTCCTCCGAA 766
|| ||||||||||| || |||||||| || |||| | || || ||||||||| | ||
Sbjct 444 AGGTGTCGGATTCGCTAACCAATCTGTTCCTCTTTACCTCTCTGAGATGGCTCCTGCTAA 503
Query 767 TCTAAGAGGAGCTTTCAACAACGGGTTTCAAGTAGCGA-TTATC-TTTGGTAT-TGTGGT 823
| ||||||||| |||||| || |||||| |||| | | | | | || || | | |
Sbjct 504 GATCAGAGGAGCTCTCAACATTGGTTTTCAATTAGC-AGTCA-CGATCGGGATCT-TAGC 560
Query 824 TGC-AACGATCATCAATTACTTCACCGCACAGATGAAAGGAAAC---ATCGGATGGAGAA 879
|| |||| | |||||||| | ||| || || | || | ||| ||||||||||||
Sbjct 561 CGCGAACG-TTGTCAATTACGTGACCCCAAAGCT-CAA-G-AACGGGATCGGATGGAGAT 616
Query 880 TCTCTCTCGGATTAGCTTGTGTCCCTGCAGTGATGAT-CATGATCGGA-GCTCTGATCCT 937
| ||| |||| |||||| | || || || | ||||| | | ||||| ||| | | ||
Sbjct 617 TATCTGTCGGTTTAGCTGGAGTTCCGGCCTTTATGATGC-TCCTCGGATGCT-T-TTTCT 673
Query 938 T-CCCGACACTCCCAACTCTCTCATCGAACGTGGCTACACCGAAGAGGCCAAGGAAATGC 996
| || || || || ||||| || | |||||||| ||| ||| | || ||||| |||
Sbjct 674 TGCCAGATACGCCAAACTCAATCCTTGAACGTGGAAACAAAGAAAAAGCTAAGGAGATG- 732
Query 997 TT-CAGTCCATCCGAGGAACCAAT-GAAGTCGATGAAGAGTTTCAA-GATCTCATTGATG 1053
|| ||| ||| |||||||| || || ||||| | |||||| || || | || ||
Sbjct 733 TTGCAGAAGATCAGAGGAACC-ATGGAGGTCGACCATGAGTTT-AATGA--AC-TT--TG 785
Query 1054 CAA-GTGAG-GAGT-C-C-AAGCA-AGTGAAACACCCATGGAAGAACATCATGCTTCCTC 1107
||| | | | |||| | | ||| | ||| || || ||||||| |||||| |||| |||
Sbjct 786 CAACGCGTGTGAGTCCGCGAAG-AGAGTTAAGCATCCATGGACGAACATAATGCAAGCTC 844
Query 1108 GTTA-CAGACCACAATTGATCATG-ACT-T-GCTTCATTCCTTTCTTTCAACAACTTACC 1163
|||| | |||| | | | ||| | || | |||||| || ||||| || || || |||
Sbjct 845 GTTATC-GACCGC-A--GCTCACGTTCTGTACCTTCATCCCGTTCTTCCAGCAGCTAACC 900
Query 1164 GGAATCAATGTCATTACCTTCTACGCCCCGGTTTTGTTCCAA-ACCCTCGGGTTCGGTAG 1222
|| ||||| ||||||| ||||| || || ||| |||| || || | || || || |
Sbjct 901 GGGATCAACGTCATTATGTTCTATGCACCTGTTCTGTT-TAAGACAATTGGTTTTGGAAA 959
Query 1223 CAAAGCTTCCCTCCTATCAGCTA-TGGTAACGGGTATCATCGA-GCTCTTGTGTACC-TT 1279
| || || || |||| || | | | || ||| | || | | || | | ||| ||
Sbjct 960 TGACGCATCTCTTATATCCGC-AGTCATCACCGGTCTTGTCAATG-TCCTCTCCACCATT 1017
Query 1280 CGTCTCTGT-TTTTACAGTGGATAGGTTTGGAAGAAGAATC-TTGTTCCTCCAAGGAGGT 1337
|| || | | | | || || | || ||| | || | | ||||| || ||||| |||
Sbjct 1018 -GTTTCCATCTACT-CCGTCGACAAATTCGGACGCAG-AGCTTTGTTTCTTCAAGGTGGT 1074
Query 1338 ATCCAGATG--CTTGTCTCTCAGATCGCTATTGGAGCCATGATTGGAGT-CAAATTTGGA 1394
|||||||| |||| | | |||||||| ||||| | ||||| || || |||||||||
Sbjct 1075 TTCCAGATGATCTTGAC-C-CAGATCGCGGTTGGATCGATGATCGG-GTGGAAATTTGGA 1131
Query 1395 GT-GGCTGGAACAGGAAACATAGGGAAAAG-TGATGCCAATCTAATCGTGGCACTGATCT 1452
| | || | ||| ||||| | | | | |||||| || ||||| ||||| |||| |
Sbjct 1132 TTCAACGGGGA-AGG-AACATTGTCAGAGGTTGATGCGGATATAATCTTGGCATTGATAT 1189
Query 1453 G-CATCTATGTAGCGGGTTTCGCCTGGTCATGGGGACCGTTGGGATGGTTGGTTCCTAGT 1511
| | ||||||| |||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 1190 GTC-TCTATGTGGCGGGTTTTGCGTGGTCATGGGGACCGTTGGGATGGTTGGTACCGAGT 1248
Query 1512 GAGATATCTCCACTAGAGATCCGATCAGCAGCTCAAGCCATAAACGTTTCGGTCAACATG 1571
||||||| |||| | || || ||||||||| ||| | ||||||||||||| ||||||
Sbjct 1249 GAGATATGTCCATTGGAAATTAGATCAGCAGGACAATCGTTAAACGTTTCGGTGAACATG 1308
Query 1572 TTCTTCACATTCCTTG-T-GGCTCAGCTCTTCCTCACTATGCTTTGTCACATGAAATTCG 1629
|||||||| ||| || | || || ||||| | || |||||||| || |||| || |
Sbjct 1309 TTCTTCACCTTC-TTCATTGGA-CAATTCTTCTTGACGATGCTTTGCCATTTGAAGTTTG 1366
Query 1630 GACTATTCTTCTTCTTCGCCTTCTTTGT-TGTCATAATGACAATATTCATCTACTTGATG 1688
| || |||| |||||||||| | | || | | || ||||| || ||||| ||||| ||
Sbjct 1367 GTCTGTTCTACTTCTTCGCCGGCATGGTCT-TGATCATGACCATTTTCATTTACTTCTTG 1425
Query 1689 TTGCCTGAGACAAA-GAATGTGCCAATCGAAGAGATGAACAGAGTGTGGAAGGCA-CATT 1746
||||| |||||||| | | || ||||| || |||||| ||||||||||||| | |||
Sbjct 1426 TTGCCGGAGACAAAAGGA-GTTCCAATTGAGGAGATGGGGAGAGTGTGGAAGG-AGCATA 1483
Query 1747 GGT-TCTGGGGAAAGTTTATTCCTGATGA 1774
| | | ||||| |||| || || | ||||
Sbjct 1484 GATAT-TGGGGGAAGTATAGTCGTAATGA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5