BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19970.1 Length=1851 Score E Sequences producing significant alignments: (Bits) Value Ahg479515 jgi|Araly1|479515|fgenesh2_kg.3__2216__AT3G19970.1 2300 0.0 > Ahg479515 jgi|Araly1|479515|fgenesh2_kg.3__2216__AT3G19970.1 Length=1628 Score = 2300 bits (1245), Expect = 0.0 Identities = 1534/1667 (92%), Gaps = 46/1667 (3%) Strand=Plus/Plus Query 192 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAGATTTGGAGTGTATTGGATTAGAT 251 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 1 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAAATTTGGAGTATATTGGATTAGAT 60 Query 252 TGTGGCGATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCACTTGTTGCTGCTGCTGC 311 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 TGTGGTTATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCTCTTGTTGCTGCTGCTGC 120 Query 312 TGTGATTACAGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 371 ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGTTATTGCCGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 180 Query 372 AGTTCGAGGTTCTGAATCAGAGCAGATTGCTCCTTCAGTGTCTGGTTTAGTTCAGGAAGA 431 |||||||||||||| || ||||||||||||||||| ||| | |||| ||||||||| || Sbjct 181 TGTTCGAGGTTCTGATTCGGAGCAGATTGCTCCTTCGGTGCCCGGTTCAGTTCAGGATGA 240 Query 432 AAGGTCCTTGTGGGTTTCTCAAGTCTCGGCCTCCAAGCT-TGCAGATTTATCTTTTGTGT 490 |||||||||||||||||||||| ||||||| |||||||| | | |||||||||||||||| Sbjct 241 AAGGTCCTTGTGGGTTTCTCAAATCTCGGCTTCCAAGCTCT-CGGATTTATCTTTTGTGT 299 Query 491 CGAGGATTTGTGTTCCTGTACCAAATGTTGATCTCCTAGCTTCTAATCCTAGCTGTAGTC 550 |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 300 CGAGGATTCATGTTCCTGTACCAAATGTTGATCTCTTAGCTTCTAATCCCAGCTGTAGTC 359 Query 551 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTAGTGTTTATCAGTCTGCAGAGTTGG 610 ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 360 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTTGTGTTTATCAGTCTGCTGAATTGG 419 Query 611 CTAAAGCATCGAAACCGGT-TGCATTCACAATC-GGTGCCTCACTTGTGGTTCCTGATAT 668 |||||||||| ||||| | |||||||||||| || ||||| ||||||||||||||||| Sbjct 420 CTAAAGCATCAAAACC-ATCGGCATTCACAATCAGG-GCCTCGCTTGTGGTTCCTGATAT 477 Query 669 TTCCTACAGATGGCATTTACCTGAGCCTAGTGCAGTCGATATGTCTGGTTCTTCGAGTTG 728 ||||||||||||||||||||||||||| | |||| ||||| |||||||||| |||||||| Sbjct 478 TTCCTACAGATGGCATTTACCTGAGCCCAATGCAATCGATTTGTCTGGTTCCTCGAGTTG 537 Query 729 TGTGTCTGAAAAGAATAGAACTGTTGTGGTTTTGCTTGGATGGCTTGGATCAAAGCAGAA 788 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 538 TGTGTCTGAGAAGAATAGAACCGTTGTGGTTTTGCTTGGATGGCTTGGATCGAAGCAGAA 597 Query 789 GCATCTGAAGAAATATGCTGATTGGTACACTTCAAAGGGTTACCATGTCATTACATTTAC 848 |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct 598 GCATCTGAAGAAATATGCGGATTGGTATACTTCAAGGGGTTACCATGTCATTACATTTAC 657 Query 849 TCTTCCGATGAATGAGATTATGAGTTATCAAGTTGGAGGGAAAGCAGAGAAGAACATCGA 908 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 658 TCTTCCCATGAATGAGATTATGAGTTATCAAGTTGGAGGAAAAGCAGAGAAGAACATCGA 717 Query 909 GTCGCTGGTTAATCACTTGGCTGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 968 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 718 GTCGTTGGTTAATCACTTGGCCGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 777 Query 969 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCCATTTTGGAAAAGTTTCAGAA 1028 ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct 778 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCTATTCTAGAAAAGTTTCAGAA 837 Query 1029 GCAAGATTCATCATTGATGGGAAGAGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 1088 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 838 GCAAGATTCATCATTGATGGGAAGGGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 897 Query 1089 TGCTGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCTGCGTTCTTGAAGAAAAGCAG 1148 || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 898 TGATGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCAGCGTTCTTGAAGAAAAACAG 957 Query 1149 TGTAGCCACTAAAGGATCTGCGAGCTCATCATATGAGTCAAACGGTATAAACATCTCCCA 1208 ||||| |||||||||||| ||||||| ||| |||||||||||||||||||| ||||||| Sbjct 958 CGTAGCTACTAAAGGATCTACGAGCTCGTCAAATGAGTCAAACGGTATAAACTTCTCCCA 1017 Query 1209 GCCTAAACC-CGCTGCAACAGAAACAGCTTTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1267 ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1018 GCCTAAACCGGGC-GCAACAGAAACAGCTCTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1076 Query 1268 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTTGACACATTATCAA 1327 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1077 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTAGACACTTTATCAT 1136 Query 1328 CAGCACAACCAAGTTGTCCACAGTTATACATTTACAGCTCTGCAGACAGAGTTATACCGG 1387 ||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| | Sbjct 1137 CAGCACAACCAAGATGTCCACAGCTATACATATACAGCTCTGCAGATAGAGTTATACCCG 1196 Query 1388 TGGAACAAGTTGAATCATTCATTGTAGAGCAGAGGAAAGCAGGACATGAGGTCCGTGCTT 1447 ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 1197 CGGAACAAGTTGAATCATTCATTGTAGAACAGAGGAAAGCTGGACACGAGGTCCGTGCTT 1256 Query 1448 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1316 Query 1508 CTGAGCTCAACCATTTCATGAACAACTTTGTCCTTTCTTGCTGCCACCATTCTTCATAGC 1567 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1317 CTGAGCTCAACCATTTCATGGACAACTTTGTCCTTTCTTGCTGCAACCATTCTTCATAGC 1376 Query 1568 GACTTCCACAAGTGTTGTTGTTGCTAACCATTTTTGGGGTCCTTTTAACTCTTATACAAG 1627 ||||||||||||||||||||| ||||||| ||||||||||| | | || || || Sbjct 1377 GACTTCCACAAGTGTTGTTGTCGCTAACCTTTTTTGGGGTC-----A--T-TT-TA-AA- 1425 Query 1628 AAAGAGAAAAATAGTTACTGATTGATGATTCTTTTTGGTTTGGATTGGTTTATAGATTCA 1687 |||| | | ||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1426 AAAG-------T--T-ACTGATTGATGATTCTTTTTGGTTTGGATAGGTCTATAGATTCA 1475 Query 1688 AATTCATTATTCCTTTGTAAATTGTTGGATATTGTACATTTAGGAGAATGA-A-GATTCA 1745 |||||||| ||||||||||| |||||||||||||| ||||||||||||| | |||||| Sbjct 1476 AATTCATT---CCTTTGTAAATGGTTGGATATTGTACGTTTAGGAGAATGAGAAGATTCA 1532 Query 1746 AGAAAGTGACG-TCCTTGTCCTTTGTAGTGGAGATTTGGATCTTATGGTTGTCTTTTGTT 1804 ||||||||||| | ||||||||||||| |||| | || || || ||| |||||| Sbjct 1533 AGAAAGTGACGGTTCTTGTCCTTTGTATTGGA-A-----AT-TT--GG--GTCCTTTGTT 1581 Query 1805 ATTTGTTCAAAGAGGGTTGTTAAGAACCCAATCATAAAGTTTTTGGC 1851 || |||||| ||||||||||||||| |||||||||||||| |||||| Sbjct 1582 ATATGTTCAGAGAGGGTTGTTAAGACCCCAATCATAAAGTATTTGGC 1628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69514697125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5