BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20060.1
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479525 jgi|Araly1|479525|fgenesh2_kg.3__2226__AT3G20060.1 1254 0.0
Ahg923494 jgi|Araly1|923494|scaffold_104775.1 579 1e-164
> Ahg479525 jgi|Araly1|479525|fgenesh2_kg.3__2226__AT3G20060.1
Length=777
Score = 1254 bits (679), Expect = 0.0
Identities = 746/779 (96%), Gaps = 2/779 (0%)
Strand=Plus/Plus
Query 35 tctctatctctcttctccttcttcttcagtttcgatcattcttgaatctgattcttctcG 94
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 1 TCTCTATCTCTCTTCTCCTTCTTCTTCAATTTTGATCATTCTTGAATCTGATTCTCCTCG 60
Query 95 AGAAAAAAGCGTTTCAATTTCAGAAATTTCGACTACGATTGTTGCTTTGTTCAATTAGAA 154
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 A-TCAAAAGCATTTCAATTTCAGAAATTTCGACTACGATTGTTGGTTTGTTCAATTAGAA 119
Query 155 GAGGCGAAAAAGGATGGCGACGGTTAATGGGTACACAGGGAATACTCCGGCGGCGACTAC 214
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 120 GAGGCGAAAAAGGATGGCGACGGTAAATGGGTACACAGGAAATACTCCGGCGGCGACTAC 179
Query 215 ACCGGCAGCCACCGGATCAAAGCAATCTGCTCCTCCGACTAAGACCGTCGATAGCCACTC 274
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 180 GCCGGTAGCCACCGGATCAAAGCAACCTGCTCCTCCGACTAAGACCGTCGATAGTCAATC 239
Query 275 CGTTCTAAAAAGGCTGCAATCTGAACTAATGGGATTGATGATGGGAGCTGATCCGGGGAT 334
||| || |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 240 CGTCCTCAAAAGGCTGCAATCTGAACTGATGGGCTTGATGATGGGAGGTGATCCGGGGAT 299
Query 335 ATCTGCGTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATTACAGGAAGCAA 394
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 ATCTGCTTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATCACAGGAAGCAA 359
Query 395 AGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCTAACGATTATCC 454
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCAAACGATTATCC 419
Query 455 TTTTAAGTCTCCCAAAGTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTTAAATCTCCCAAAGTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 479
Query 515 TGGCAATATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTGAGGAC 574
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TGGCAACATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTACGATGTGAGGAC 539
Query 575 GATATTACTCTCAATTCAAAGCCTTCTCGGAGAACCGAACATCAGCTCACCATTGAACAA 634
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GATATTACTCTCAATTCAGAGCCTTCTTGGAGAACCGAACATCAGCTCACCATTGAACAA 599
Query 635 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 694
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTATAGGAAGATGGTTGAGAAGCTCTA 659
Query 695 CAAGCCTTTAAACGCATGATTCTCAAAAATCACTGTAACTGATTTTAAAATCTCAACTGT 754
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 660 CAAGCCTTTAAACGCATGATTCTCAAAAGCCACTGTAACTGATTT-AAAATCTCAACTGT 718
Query 755 ATTGGATCATATCTCTTTTACTTTTATAATCTCAATTTGAGCCAATATTAGCAATCAAA 813
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTGGATCATGTCTCTTTTACTTTTATAATCTCAATTTGAGCCAATATTAGCAATCAAA 777
> Ahg923494 jgi|Araly1|923494|scaffold_104775.1
Length=585
Score = 579 bits (313), Expect = 1e-164
Identities = 472/547 (86%), Gaps = 18/547 (3%)
Strand=Plus/Plus
Query 163 AAAG-GATGG-CGACGGTTAATGGGTACACAGGG-AATACTCCGGCGGCGACTACACCGG 219
|||| ||||| || | || |||||||| ||||| ||||||||||| || | | ||||
Sbjct 17 AAAGTGATGGCCG-CCGTAAATGGGTA-TCAGGGAAATACTCCGGC--AGA-TCCTCCGG 71
Query 220 CAG-CCACCGGATC-AAAGCAATCTGCTC-CTCCGACTAAGACCGTCGATAGCCACTCCG 276
| | | | ||||| ||| ||| |||| | ||||||| ||||| || || ||||| || |
Sbjct 72 C-GTCTAATGGATCTAAA-CAACCTGC-CGCTCCGACCAAGACTGTTGACAGCCAATCTG 128
Query 277 TTCTAAAAAGGCTGCAATCTGAACTAATGGGATTGATGATGGGAGCTGATCCGGGGATAT 336
|||| |||||||||||||||||| | ||||| ||||||||||| | || ||| || ||||
Sbjct 129 TTCTCAAAAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAGGAATAT 188
Query 337 CTGCGTTT-CCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATTACAGGAAGCAAA 395
| || ||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 189 CGGC-TTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAAGCAAA 247
Query 396 GATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCTAACGATTATCCT 455
||||||||||| ||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 248 GATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGATTATCCT 307
Query 456 TTTAAGTCTCCCAAA-GTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 514
|| || || ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 308 TTCAAACCT-CCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATGTCTA 366
Query 515 TGGCAATATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTGAGGAC 574
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 367 TGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGTCAGGAC 426
Query 575 GATATTACTCTCAATTCAAAGCCTTCTCGGAGAACCGAACATCAGCTCACCATTGAACAA 634
||| |||| || ||||| ||||| || ||||||||||||||||| |||||||||||||
Sbjct 427 AATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGAACAC 486
Query 635 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 694
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 487 TCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 546
Query 695 CAAGCCT 701
|||||||
Sbjct 547 CAAGCCT 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30422087766
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5