BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20362.1 Length=144 Score E Sequences producing significant alignments: (Bits) Value Ahg925530 jgi|Araly1|925530|scaffold_201091.1 174 1e-43 Ahg925482 jgi|Araly1|925482|scaffold_201043.1 174 1e-43 > Ahg925530 jgi|Araly1|925530|scaffold_201091.1 Length=214 Score = 174 bits (94), Expect = 1e-43 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 157 Query 108 AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG 144 ||||||||||| ||||||||||||||||||||||||| Sbjct 158 AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG 194 > Ahg925482 jgi|Araly1|925482|scaffold_201043.1 Length=791 Score = 174 bits (94), Expect = 1e-43 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 657 Query 108 AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG 144 ||||||||||| ||||||||||||||||||||||||| Sbjct 658 AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG 694 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4620779581 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5