BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20660.1 Length=1802 Score E Sequences producing significant alignments: (Bits) Value Ahg930011 jgi|Araly1|930011|scaffold_302468.1 2516 0.0 > Ahg930011 jgi|Araly1|930011|scaffold_302468.1 Length=1623 Score = 2516 bits (1362), Expect = 0.0 Identities = 1541/1628 (95%), Gaps = 9/1628 (1%) Strand=Plus/Plus Query 64 tgtaaaaatcaaaaca-taaaTTATGGAATCTCCGGAGGATAGAAACGGTAACGATGTCC 122 ||||||||| |||| | |||| |||||||||||| || || |||||||||||||| |||| Sbjct 1 TGTAAAAATTAAAAAATTAAA-TATGGAATCTCCAGATGAAAGAAACGGTAACGACGTCC 59 Query 123 GACAACCGCTGCTAGAGAAAATTCCGGTGAAGAAAGAAGCGGAGGGAGAGGAGAGATTAT 182 |||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 60 GACAACCGTTGCTGGAGAAAATTCCGGCGAAGAAAGAAGCGGAGGGAGAAGAGAGATTGT 119 Query 183 GCATAGATGAGATGTTACAAAGATATTGCGGCGAGTTTGGGAGGTGGCAGTTGAAACACT 242 ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 120 GCATAGATGAGATGTTACAAAGATACTGCGGCGAGTTTGGTAGGTGGCAGCTGAAACACT 179 Query 243 TCGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTGATGATATTTG 302 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 180 TTGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTTATGATATTTG 239 Query 303 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTCGGATTGTCGGGTCGGGTCAT-TGAAC 361 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| Sbjct 240 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTTGGATTGTCGGGTCGGGTCATCT-AAC 298 Query 362 TGCGAGT-TGGATCCGAGTTCTTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 420 ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 299 TGCGA-TATGGATCCGAGTTCCTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 357 Query 421 GGAGTGGGGATTGATTTGCGGCGACAAGTATAAAGTTGGTCTTGTTCAGGCTCTCTTCTT 480 ||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| Sbjct 358 GGAGTGGGGATTGATTTGCGGTGAGAAGTATAAAGTTGGTCTTGTTCAAGCTCTTTTCTT 417 Query 481 CGCCGGCTGCATGATCGGTGCAGGAGTATTCGGACATTTATCGGACTCTAAGCTAGGAAG 540 |||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 418 CGCCGGATGCATGATCGGTGCAGGAGTATTCGGACATCTATCGGACTCCAAGCTAGGAAG 477 Query 541 AAAAGGCTCGCTAACAGTTGTATGCATTATCAACGCAATCTTTGGTATCGCGACAGCTTT 600 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 478 AAAAGGCTCGCTAACAGTTGTTTGCATTATCAACGCAATCTTTGGTATCGCAACAGCTTT 537 Query 601 CTCCCCAAACTACTGGACCTATGTAGTTCTCCGTTTCTTGACTGGTTTCAGCACCGGTGG 660 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 538 CTCCCCAAACTATTGGACCTATGTGGTTCTCCGGTTCTTGACTGGTTTCAGCACCGGTGG 597 Query 661 TGTTGGCCTAACCGCGTTTGTCTTAGCCACTGAACCCATTGGACCGAGCAAACGCGGTGT 720 |||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| ||||| Sbjct 598 TGTTGGCCTAACTGCGTTTGTCCTAGCCACTGAACCCATAGGACCAAGCAAACGTGGTGT 657 Query 721 AGCCGGAATGTCAACTTTCTACTTCTTCTCCGCGGGCATTGCAGTTTTATCCGGCATCGC 780 |||||||||||||||||||||||||||||| || ||||||||| || | |||||||| || Sbjct 658 AGCCGGAATGTCAACTTTCTACTTCTTCTCTGCCGGCATTGCACTTCTCTCCGGCATTGC 717 Query 781 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCATCTCTCTTGTT 840 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 718 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCGTCTCTCTTGTT 777 Query 841 CCTACTCATTGTTATCCCATTCATATCCGAGTCCCCAAGGTGGTATCTCGTGAGAGGCAA 900 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 778 CCTACTCATTGTTATCCCATTCATCTCCGAGTCCCCTAGGTGGTATCTCGTGAGAGGCAA 837 Query 901 AGTAGATGAGGCGATGAAGCTGATGCATTCGATCGCTAAAACGAACGGACGTCACATTCC 960 |||||| |||||||||||| ||||||||| |||||||||||||||||| || |||||||| Sbjct 838 AGTAGACGAGGCGATGAAGTTGATGCATTTGATCGCTAAAACGAACGGGCGCCACATTCC 897 Query 961 AGCTGGTGTCACTCTTGCT-TTAGACGACGATGTGGAAAATAACAACGGGGAGAGGAATA 1019 ||||| |||||||||||| || |||||||| ||||||||||| ||||| |||||||||| Sbjct 898 CGCTGGAGTCACTCTTGCTCTT-GACGACGACGTGGAAAATAAAAACGGAGAGAGGAATA 956 Query 1020 CCGCTGTTGAGGGTTCGCTGAAAGATGTTATACTGTCGCCTCTCATGCGGATGAGACTTG 1079 | ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 957 CTGCTGTTGAGGGTTCGCTCAAGGATGTTATACTGTCGCCTCTCATGCGGATCAGACTTC 1016 Query 1080 TCATTTCGGTTGCCATAAGTTTCACAGTCTCTATTGTATACTACGGACTAAGCCTCAACG 1139 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1017 TCATTTCGGTTGCCATAAGTTTCACAGTCTCGATTGTATACTACGGACTAAGCCTCAACG 1076 Query 1140 TAGGCAACCTCAAGACCAATCTTTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1199 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1077 TAGTCAACCTCAAGACCAATCTCTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1136 Query 1200 CGGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1259 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 CCGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1196 Query 1260 GGACACAGTGGTTCAGCTGCGTTTTCTGCCTCGTTGGATTCTCTGTATGGGGAGCTGGTC 1319 |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct 1197 GGACACAGTGGTTCAGCTGCGTTTTCTGTCTCGTAGGATTCGCTGTATGGGGAGCTGGTC 1256 Query 1320 CATGGAAATCAGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1379 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 CATGGAAATCGGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1316 Query 1380 ACAATCTTCTGTTCATATACATCGCGGAGCTGTTTCCAACAGTGGTGAGGAACGCGGCAT 1439 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1317 ACAATCTTCTGTTCATATACATCGCAGAGCTGTTTCCAACAGTGGTGAGGAACGCAGCAT 1376 Query 1440 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCGATTCTGGCGCCGTTTGTGGTGGTTT 1499 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1377 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCAATTCTGGCGCCTTTTGTGGTGGTTT 1436 Query 1500 TAGGGGAAGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1559 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 TAGGGGAGGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1496 Query 1560 CGTTTTACTTGCCAGAGACGTTAAACAAGCCGTTGTATGATACAATGTTTGGGATGCACG 1619 ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 1497 CGTTTTACTTGCCGGAGACGTTAAACAAGCCGTTGTATGACACAATGTCTGGAATGCACG 1556 Query 1620 AAGCTGAGAGTGAGAGTAACAGAGAAAGAGGAGAAGTAATATGTTAAAAGAAACAGAATT 1679 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1557 AAGCTGAGAGTGAGAGTAACAGAGGAAGAGGAGAAGTAATATGTTAAA-GAAACAGAATT 1615 Query 1680 TACACTTA 1687 ||| |||| Sbjct 1616 TACTCTTA 1623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67648275120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5