BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20790.1 Length=1306 Score E Sequences producing significant alignments: (Bits) Value Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1 1757 0.0 Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1 185 6e-46 > Ahg479605 jgi|Araly1|479605|fgenesh2_kg.3__2306__AT3G20790.1 Length=1234 Score = 1757 bits (951), Expect = 0.0 Identities = 1154/1245 (93%), Gaps = 41/1245 (3%) Strand=Plus/Plus Query 64 CTTCACCTGGAATTGCCATACTCGGAGCTGGGATCTTCGTCAAAACTCAATACATTCCGA 123 ||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 11 CTTCACCAGGAATTGCCATTCTCGGAGCTGGGATCTTCGTCAAAACGCAATATATTCCGA 70 Query 124 GATTAGCTGAGATCTCCGATCTCGTCGACCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 183 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 71 GATTGGCTGAGATCTCCGATCTCGTCGTCCTGAAAGCGATTTGGAGCCGTACTGAGGAAT 130 Query 184 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCTGAAGTGAAGTGCAAATGGG 243 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 131 CTGCAAAAGGAGCTGTGGAGATAGCAAGAAAGCATTTTCCAGAAGTGAAGTGCAAATGGG 190 Query 244 GAGATGAGGGTCTCAATGAGATCATTCAAGACAGTTCAATAGTTGGTGTTGCTGTAGTTG 303 ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 191 GAGATGATGGTCTCAATGAGATCATTCAAGATAGTTCAATAGTTGGTGTTGCTGTTGTTG 250 Query 304 TAGCTGCAGAAACCATGGTTGAATTGTCACTGAAGATGCTCAAGGCAGGAAAGCACGTCC 363 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 251 TAGCTGCAGAAACCATGGTTGAAATGTCACTGAAGATGCTCAAGGCAGGAAAACACGTCC 310 Query 364 TTCAAGAGAAGCCAGCTGCTGCTTCAATCAGTGAGATAGAAACTGCAATGTCAAGCTATA 423 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 311 TTCAAGAGAAGCCAGCTGCTGCCTCAATCAGTGAGCTAGAAACTGCAATGTCAAGCTATA 370 Query 424 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATTTGGGCTGTGGCTGAAAATTATCGTT 483 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 371 GAAATATTTCTGCTGATTCCCCATGCCGTCCAATCTGGGCAGTGGCTGAAAATTATCGTT 430 Query 484 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAATTGGAGATATGATGAACG 543 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 431 TTGAGCCAGCTTTTGTTGAGTTGAAGAAACTGATAGCAGAAACTGGTGATATGATGAACG 490 Query 544 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCTAATCCTTATTTCTCAAGCTCCTGGA 603 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 491 TCCAGCTTATTATTGAGGGATCAATGAACAGTTCGAATCCTTATTTCTCAAGCTCGTGGA 550 Query 604 GGCGAAATTTGAGTGGTGGTTTCATCTTGGATATGGGTGTACATTACATTGCAGGATTAA 663 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 551 GGCGAAATTTGAGCGGTGGTTTCATCTTGGATATGGGTGTGCATTACATTGCAGGGTTAA 610 Query 664 GAATGCTTGTTGGATGTGAGGTAACATCAGTCTCAGCCACCACTACCCATGTGGATAAGA 723 ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| Sbjct 611 GAATGCTTGTTGGATGTGAGGTAGCATCAGTCTCTGCCACCACTTCCCATGTGGATAAGA 670 Query 724 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTCGAGAACGGATGCTCTGGGG 783 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 671 CTTTACCTGGACCAGACAATATAACATCAAACTTTCAGCTGGAGAACGGATGCTCTGGTG 730 Query 784 TTTTTGTTATGGTTGTGTCTTCAAGGTCTCCAAAG--AT--ACTA----T-GGA------ 828 ||||||||||||||||||||||||| ||||||||| || | || | ||| Sbjct 731 TTTTTGTTATGGTTGTGTCTTCAAGATCTCCAAAGGCATGTAGTAAGACTTGGATATTAT 790 Query 829 G-A-A-TCGTAGGACTAAAGGGCACTGTTCAACTAGAGCGTGGAGTGGAAGGTGGCCGAC 885 | | | |||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct 791 GGAGAGTCGTAGGATTAAAAGGCACTGTTCAACTTGAGCGTGGAGTCGAAGGTGGCCGAC 850 Query 886 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCAT 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 851 ATGGTTACATGGCCACGATTTACGGGGAAGGAGGGACATCAAGGACCATCTTTTACCCGT 910 Query 946 TCAGCGGAGTGACTGAAGAGTTAAAAGCGTTCTTCAATGATATTTCAGAAACTTCAAAGG 1005 |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct 911 TCAGCGGAGTGACTGAAGAGCTAAAAGCGTTCTTCAATGATATCTCAGAGACTTCAAAGG 970 Query 1006 AGCAAGAGCCTCGTCTATCATATGTGGAAGGTGCTCGTGACGTTGCAGTTCTTGAAGCAA 1065 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 971 AGCAAGAGCCTCGTCTATCATACGTGGAAGGTGCTCGTGACGTTGCGGTTCTTGAAGCAA 1030 Query 1066 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCAACAAATTCTAGCTTTGAA 1125 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1031 TGCTCGAGTCTGGTGCGAAAAATGGAGCCGTAGTCCCTGTCACCAAATTCTAGCTTTGAA 1090 Query 1126 CCTTTATTAAGTACGATTAGACTCCAACATACCGCTAAAGCTTTTGCTGGAATAAAAATT 1185 ||||| | | ||| | | | | ||||||||||| | ||||||||||||| Sbjct 1091 CCTTTC-------C-A--AGA-T--A-C---C-GCTAAAGCTTT-GATGGAATAAAAATT 1131 Query 1186 GTTACCGTT-CAA-CATGATAATACAAACTCTATAATATTTCTTTTGTAACCAATCTTTT 1243 ||||| ||| ||| | ||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1132 GTTAC-GTTTCAAAC-TGAAAATACATACTCTATAATATTTCTTTTGTAACCAATCTTTT 1189 Query 1244 ATTATCCCAAGACTTATGCATTCTGGGGGATTGGTTCTAGAGCTT 1288 |||||||| ||||||||||||||| |||| || |||||| ||||| Sbjct 1190 ATTATCCCGAGACTTATGCATTCTTGGGGCTTTGTTCTAAAGCTT 1234 > Ahg479606 jgi|Araly1|479606|fgenesh2_kg.3__2307__AT3G20800.1 Length=1224 Score = 185 bits (100), Expect = 6e-46 Identities = 128/141 (91%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 1168 TTTGCTGGAATAAAAATTGTTACCG-TTC-AACATGATAATACAAACTCTATAATATTTC 1225 |||| ||||||||||||||||| || ||| ||| ||| |||||| ||||||||||||||| Sbjct 1224 TTTGATGGAATAAAAATTGTTA-CGTTTCAAAC-TGAAAATACATACTCTATAATATTTC 1167 Query 1226 TTTTGTAACCAATCTTTTATTATCCCAAGACTTATGCATTCTGGGGGATTGGTTCTAGAG 1285 |||||||||||||||||||||||||| ||||||||||||||| |||| || |||||| || Sbjct 1166 TTTTGTAACCAATCTTTTATTATCCCGAGACTTATGCATTCTTGGGGCTTTGTTCTAAAG 1107 Query 1286 CTTAAAAATAATTACAATAAG 1306 |||| |||||||||||||||| Sbjct 1106 CTTATAAATAATTACAATAAG 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48835456677 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5