BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20810.2 Length=1665 Score E Sequences producing significant alignments: (Bits) Value Ahg479607 jgi|Araly1|479607|fgenesh2_kg.3__2308__AT3G20810.2 2361 0.0 > Ahg479607 jgi|Araly1|479607|fgenesh2_kg.3__2308__AT3G20810.2 Length=1632 Score = 2361 bits (1278), Expect = 0.0 Identities = 1551/1674 (93%), Gaps = 54/1674 (3%) Strand=Plus/Plus Query 1 ATCACTTCAAAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAACTCA 60 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 ATCACTTCCTAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAA--C- 57 Query 61 TCATCACTCTAAAATATCTCCCACCACATACCACTTAACCCGACCCGACCCGACCGGAAA 120 |||||||||||||||||||||||||||||||||||||| || |||||||||| |||| Sbjct 58 TCATCACTCTAAAATATCTCCCACCACATACCACTTAA---GA--CGACCCGACCCGAAA 112 Query 121 ACCCGACCCGATCCATCCCAATGTCAGGAGCTACCACCGCTTCCTCCGGAGACCACAACA 180 ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| Sbjct 113 ACCCGACCCGATCCATCCCAATGTCTGGAGCTTCCACCGCTTCCTCCGGTGACCACAACA 172 Query 181 ACCTCCGTCTCCCAACTCCGACGCTTGACGCCGAATCGCAAACTCTGCTGCAATCGATTT 240 || ||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 173 ACGTCCGTCTCCCAACTCCGACGCTTGACGCCGAATTTCATTCTCTGCTGCAATCGATTT 232 Query 241 CTGCTGAAGGGGGTTACGCTTATGCTCGCATGGCGGTGTTAGCGGTGGCCGGTGACCAAA 300 ||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 233 CTGCTCAAGGCGGTTACGCCTATGCTCGCATGGCGGCGTTAGCGGTGGCCGGTGACCAAA 292 Query 301 GCGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCGTGGCACT 360 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 293 GTGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCATGGCACT 352 Query 361 CGGTTCTCCCCGTT-TGGCGCGACGCTTACTCAATGGCTTGTCTCCACGTAGCTAAAATC 419 | ||||||||| || ||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 353 CAGTTCTCCCC-TTGTGGCGCGACGCTTACTCAATGGCTTGTCTCCTCGTCGCTAAAATT 411 Query 420 CATTTCGCCGCCGGCGAGTTTGGTGAGGCGCTTGGTGCGCTTGATATGGGTCTTATCATG 479 |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 412 CATTTCGCCGACGGCGAGTTTGGTGAAGCGCTTGGTGCGCTTGATATGGGGCTTATCATG 471 Query 480 GGAGGTATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTGTTGGTCTCCTCTGAAGCT 539 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 472 GGAGGGATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTATTGGTCTCCTCCGAAGCT 531 Query 540 CGTAAGATGACGAAGAGTCTTGAAGAAGCTTCTGGAGATTTCAAAGGTGAGAGATTGGTC 599 ||||||| ||| |||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 532 CGTAAGAAGACAAAGAGTCTTGAAGAAGCTTCTGGAGAGTTCATGGGTGAGAAATTGGTC 591 Query 600 CCGGAAGTTCCCGTCGACGTCAATGAGGTGAGACAT-GTTTTGGCTAATCTACAATTACT 658 |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 592 CCGGAAGTTCCCGTTGACGTCAATGAGGTGAGACATGGTTTT-GCTAATCTACAAGTACT 650 Query 659 TGTCCTTAAGATTCTACCTTGCAGGTCTTTAACTTGTAAAAGAGTAGAGAAGAGGTCTGG 718 ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 651 TGTGCTTAAGATTCTACCTTGCAGGTCCTTAACTTGTAGAAGAGTAGAGAAGAGGTCTGG 710 Query 719 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTATCTGCCAGGTACACCAGTTGTTATAAC 778 |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct 711 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTTTCTGTCGGGTACACCAGTTGTTATAAC 770 Query 779 CAATTCTATGGCTCATTGGCCAGCCAGGACCAAGTGGAATCACTTGGACTACCTCAATGC 838 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 771 CAATTCTATGGCTCATTGGCCAGCCAGGGCCAAGTGGAACCACTTGGACTACCTCAATGC 830 Query 839 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 890 Query 899 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATGCGGACCAATAAATCGTC 958 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 891 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATTCGGACCAATAAATCGTC 950 Query 959 TCCAATGGAGCCTACTTATCTTGCCCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1018 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 951 TCCAATGGAGCCTACCTATCTTGCGCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1010 Query 1019 AGATGATATATGTATTCCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1078 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 AGATGATATATGTATACCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1070 Query 1079 TGCATGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1138 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 TGCGTGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1130 Query 1139 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGA 1198 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1131 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTCCCTACAAGACGA 1190 Query 1199 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGTCAGGTTGATCTAGACAATAT 1258 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1191 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGCCAGGTTGATCTAGACAATAT 1250 Query 1259 CGACGAA-ACCGAGTTCCCAAAGGCCATGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1317 |||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1251 CGAC-AAGACCGAGTTCCCAAAGGCAACGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1309 Query 1318 AAGGTGAAATGTTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1377 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 AAGGTGAAATGCTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1369 Query 1378 GTCTCTCGGTTAGCTTCTGGTGGAGCAATGAAGCAGAATCTTCTAGCTCGTAGCGAATGG 1437 || ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| || Sbjct 1370 GTTTCTCGGTTAGCTTCTGGTGGAGCAATGAAACAGATTCTTCTAGCTCATAGCGAAAGG 1429 Query 1438 ATTTATTTTTAATCTCTGTTTCAGGTTCTAAGTTCACGTTGTGTCTTTATGTAAGAAGAA 1497 | ||| | |||||||| | | | |||| | | ||| | ||| ||| Sbjct 1430 AGTTACTATTAATCTC----T---G---T---TTCA-G--G-GTC--TGTGT---AAG-- 1465 Query 1498 ACTATGTAGAGAAGAAAACAACTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1557 | | | | | ||| |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1466 A--A-G-A-A-AAG-AAACAATTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1518 Query 1558 TGTTGTAAAAGACAATTGAGAGCTCTT-GGTACAGACATTTTTTAGGTATTG-------G 1609 ||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1519 TGTTGTAAAAGACAATTGAGAGCTCTTTGGTACAGACATTTTTTAGGTATTTCATATTTG 1578 Query 1610 TAATGTTTGTCTTTGTTTCAAGTAAGAAAT-GGTTTAATCAAAATCTAATCTTC 1662 ||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||| Sbjct 1579 TAATGTTTGTCTTTGCTTCAAGTAAGAAAAAGGTTTAATCAAAAGCTACTCTTC 1632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62429911555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5