BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G20820.1 Length=1300 Score E Sequences producing significant alignments: (Bits) Value Ahg930029 jgi|Araly1|930029|scaffold_302486.1 1899 0.0 > Ahg930029 jgi|Araly1|930029|scaffold_302486.1 Length=1145 Score = 1899 bits (1028), Expect = 0.0 Identities = 1101/1137 (97%), Gaps = 1/1137 (0%) Strand=Plus/Plus Query 35 AAAAAGAATC-TTCAAACAATGAATCTCAACGTCGTCGTTTTACTCCTACTCCTTCTAAT 93 ||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 9 AAAAAAAATCTTTCAAACAATGAATCTCAACGTCGTCGTTTTACTCTTTCTCCTTCTAAT 68 Query 94 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 CTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGC 128 Query 154 TCTTCACGAGCCTTACCTCGGCATTTTCAACTCATGGACAGGCCAAGACTGTTGCCACAA 213 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 129 TCTTCACGAGCCATACCTCGGCATTTTCAACTCATGGACCGGCCAAGACTGTTGCCACAA 188 Query 214 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAATCTCCGCGG 273 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 189 CTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAACCTCCGCGG 248 Query 274 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCACCGAACCGGTTACATGACCGGACACAT 333 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 249 CGAGTCAGAAGATCCAATCTTCGAACGAGCTCATCGAACCGGTTACATGACCGGCCACAT 308 Query 334 CTCCGCCTCGATATGTGAGCTCACTCGTCTCTCCGCCATTACAATCGCCGATTGGAAAGG 393 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 309 CTCCGCCTCGATATGTGACCTCACTCGTCTCTCCGCCATTACCATCGCCGATTGGAAAGG 368 Query 394 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTTCCTTTTCTCCGTACACTCGACTT 453 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 369 TATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTCCCTTTTCTCCGTACACTCGACTT 428 Query 454 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 AATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGC 488 Query 514 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCATTAACCAATCT 573 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 489 TGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCGTTAACCAACCT 548 Query 574 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGTGTAATCCCGTCGGA 633 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 549 CTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGGGTAATCCCGTCGGA 608 Query 634 CGTCGGAAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAACCGAATAACCGGTCG 693 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 609 CGTCGGGAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAATCGAATAACCGGTCG 668 Query 694 GATCCCAGAATCATTAACCAATATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 753 |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 669 GATCCCTGAATCCTTAACCACTATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCA 728 Query 754 ACTCTACGGTACAATCCCACCGTCTCTAGGACGTATGTCGGTACTAGCCACACTTAACCT 813 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 729 ACTCTACGGTACAATCCCACCGTCGCTAGGACGTATGTCGGTTCTAGCCACACTTAACCT 788 Query 814 CGACGGAAACAAAATCTCCGGCGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 873 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 789 CGACGGAAACAAAATCTCCGGAGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAA 848 Query 874 TCTGAATTTGAGCCGGAACTTGCTACAAGGGAAGATACCTGAAGGGTTTGGACCAAGGTC 933 |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 849 TCTGAATTTGAGCCGGAATTTACTACAAGGGAAGATACCGGAAGGGTTTGGACCAAGGTC 908 Query 934 TTACTTCACAGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATACCGAGATCGAT 993 ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 909 TTACTTCACTGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATCCCAAGATCGAT 968 Query 994 CTCAGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1053 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 CTCTGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGAT 1028 Query 1054 TCCGGTAGGTTCACCGTTTGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1113 |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 TCCGGTGGGTTCGCCGTTCGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCT 1088 Query 1114 TTGTGGTAAACCTTTAAGAGCTTGCTTGAAAAATTGatttttatatgtaatttgagt 1170 |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1089 TTGTGGTAGACCTTTAAGGGCTTGTTTGAAAAATTGATTTTTATATGTAATTTGAGT 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48606719175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5