BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G20920.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479619 jgi|Araly1|479619|fgenesh2_kg.3__2320__AT3G20920.1 2159 0.0
> Ahg479619 jgi|Araly1|479619|fgenesh2_kg.3__2320__AT3G20920.1
Length=1305
Score = 2159 bits (1169), Expect = 0.0
Identities = 1265/1311 (96%), Gaps = 7/1311 (1%)
Strand=Plus/Plus
Query 18 aaaaaaaCTCTCCGACTCGGAAGAAGAGGGAGAGAGATGAAGAAGCCGGTCGGAGCCGAG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAACTCTCCGACTCGGAAGAAGAGGGAGAGAGATGAAGAAGCCGGTCGGAGCCGAG 60
Query 78 AAGAAGAGGGTTAAACGATCATCGGGATCTGCATCTACTTCCGTTAGAGATTCTGGTTCT 137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAGAAGAGGGTTAAACGATCATCGGGATCTGCATCTACCTCCGTTAGAGATTCTGGTTCT 120
Query 138 GATTCTCAACCTAGGAAGCAAGCTGTGAAGAAGGATAGTTTTCAGTTGTTTGCTGAGAAA 197
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGCTCAACCTAGGAAGCAAGCTGTGAAGAAGGATAGTTTTCAGTTGTTTGCTGAGAAA 180
Query 198 GTTAGAGACCACAAGGGATTAGAATCCAGATGGGCTGTTATGGAGCAAGCACGAGTTGAA 257
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTTAGAGACCACAAGGGATTGGAATCCAGATGGGCTGTTATGGAGCAAGCACGAGTCGAA 240
Query 258 TACTTT-AGAGGGAAAGATTTTGTGAGCTTTATGAAGAATAACCCTGACTTTAAAGATAT 316
|| ||| ||||||||||||||||||||||| ||||||||||| || || |||||||| ||
Sbjct 241 TA-TTTCAGAGGGAAAGATTTTGTGAGCTTCATGAAGAATAATCCAGAGTTTAAAGAGAT 299
Query 317 TCTGGAAGAAGATAAAGACCTTGACACAGACGATATTGCCAATGTTTTGTTGGGAAAGAA 376
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 300 TCTGGAAGAAGATAAAGACCTTGATACAGATGATATTGCCAATGTTTTGTTGGGAAAGAA 359
Query 377 CCTTTTGGTCCGCTGTGATCGTGTTACTAAAACTCTTCGTCCCGGGAAGAAAAAGCTCTC 436
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CCTTTTGGTTCGCTGTGATCGTGTTACAAAAACTCTTCGTCCCGGGAAGAAAAAGCTCTC 419
Query 437 TACTTGGCCTGCTCATTTGGAGATTTTCCGTGACGATCAATCTTTCTCTGAAAATGATGC 496
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 TACTTGGCCAGCTCATTTGGAGATTTTCCGTGATGATCAATCTTTCTCTGAAAATGATGC 479
Query 497 CTTTTTTGCATGGACGTTCGAAAAACGGCATCCGCTATGGCAAACGCTTTTGTCCTTCTT 556
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 480 CTTTTTTGCATGGACGTTCGAAAAAAGGCATCCTCTATGGCAAACACTTTTGTCCTTCTT 539
Query 557 CTGGCCTGTATTGACTCTTGCAATTTGTTTGTTTCCTGTGTATCCACACCGTTGCAAACT 616
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 CTGGCCTGTATTGACTCTTGCAATTTGTTTGTTTCCTGTGTACCCACACCGTTGCAAACT 599
Query 617 AATTGTACTCTACTCATGTGCGGGCATTCTTCTGATGATTCTCTCCTTACTTTTCGTGAG 676
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 600 AATTGTACTCTACTCATGCGCGGGCATTCTTTTGATGATTCTCTCCTTGCTTTTCGTGAG 659
Query 677 AGCAGTTGCTTTCGGTGCTATGTGGATTCTTTTGGGAAAGCGTGTCTGGTTCTTCCCCAA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCAGTTGCTTTCGGTGCTATGTGGATTCTTTTGGGAAAGCGTGTCTGGTTCTTCCCCAA 719
Query 737 CATTCTAGCTGAGGAAGCCACATTGAAGGAACTGTTCCGTTTCTGGCCAAAGAAAGACGA 796
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CATTCTAGCCGAGGAAGCCACATTGAAGGAACTGTTCCGTTTCTGGCCAAAGAAAGACGA 779
Query 797 GGAAGAACCGCCCAAGTGGACATCTCGACTTTTCTACACAGTAGTGGCTATTGTTGTTGT 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGAAGAACCGCCCAAGTGGACATCTCGACTTTTCTACACAGTAGTGGCTATTGTTGTTGT 839
Query 857 CATGCTGCTTAGGCGTCATGCCCCTGATGAAGCTGCTCGGGCCAGGTACCAAAGAAGGAT 916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATGCTGCTTAGGCGCCATGCCCCTGATGAAGCTGCTCGGGCCAGGTACCAAAGAAGGAT 899
Query 917 GTCCAACATCATTGATGATGTCCTTGAGTGGTCACCAAAGCTAGCACTTTCTGGTTTGAT 976
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 900 GTCCAACATCATTGATGATGTCCTTGAGTGGTCACCAAAGCTAGCACTATCTGGTTTAAT 959
Query 977 GGAGAATCAGCAACCTGTAAACATCACAGATGCGGCAAACAACTCCTCAGATTCAGCAGG 1036
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGAGAATCAGCAACCTGTGAACATCACAGATGCGGCAAACAACTCCTCAGATTCAGCAGG 1019
Query 1037 AGGTCCCGACCAGACTGAAGAGGTCGACCTAGATGAAACTCAAGGCGAGGACCTAGACGA 1096
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1020 T--TCC-GACCAGACTGAAGAGGTCAACCTAGACGAAACTCAAGGCGAGGACCTAGACGA 1076
Query 1097 AACGCAAGGCAAGGAGGAAGCTGAAGGTTGGACTGACTCTGATCTTAAAACATaaaaaaa 1156
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 AACTCAAGGCGAGGAGGAAGCTGAAGGTTGGACTGACTCTGATCTAAAAACATAAAAAAA 1136
Query 1157 CCAAAATATAGAAACGAAAGTTCATTGTAACAATAAGTCAACTTAAGTGACCAAGACGAG 1216
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 C-AAAATATAGAAACGAAAGTTCATTGTAACAATAAGTCAGCTTAAGTGACCAAGACGAG 1195
Query 1217 GTGAGTTCTTTATAAGAAAGTCTTGAAAGATTTTGTGGTACTCCATTACTCCTTTACATT 1276
|||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| || |
Sbjct 1196 GTGAGTTCTT-ATAAGAAAGTCTTGAAAGATTTTGTGGTACTTCATTACTCTTTTTCAAT 1254
Query 1277 TTGACACAATCTGGAATTTAGCTCTCAATCACAGTTTTGTATTCCAAACTT 1327
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1255 TTGACACAATCTGGAATTTAGCTCTCAATCACAGTTTTGTATTCGAAACTT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5