BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21070.1 Length=1942 Score E Sequences producing significant alignments: (Bits) Value Ahg342253 jgi|Araly1|342253|fgenesh1_pg.C_scaffold_3002016 2431 0.0 > Ahg342253 jgi|Araly1|342253|fgenesh1_pg.C_scaffold_3002016 Length=1515 Score = 2431 bits (1316), Expect = 0.0 Identities = 1455/1519 (96%), Gaps = 22/1519 (1%) Strand=Plus/Plus Query 180 CAGAGAATGGTTTCACTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 239 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 CAGAGAATGGTTTCAGTCATTTGACTTCACTTGCTCAATCAGAGAAGGCTGTTCAGGAGC 64 Query 240 TTCTTCTTCAACAGACTCCTATGCAGGCTACTGACGACCATCTCGTTGAGTTCTCTGAGG 299 |||||||||| ||||||||||||||||||||||| ||||||||| ||||||| || |||| Sbjct 65 TTCTTCTTCAGCAGACTCCTATGCAGGCTACTGATGACCATCTCATTGAGTTTTCAGAGG 124 Query 300 CTTTGAGAACTGTTGCAAAGGCACTAAGGGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 359 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 125 CTTTGAGAACTGTTGCAAAGGCACTAAGAGGAGCTGCTGAAGGAAAGGCGTTGGCTCAAG 184 Query 360 CTGAGGCTGCTGAATGGAAGCGTAGATACGAGTTAGAGAGGTCTAAGAACGTGGAGTTGC 419 ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| Sbjct 185 CTGAGGCTGCTGAATGGAAGCGTCGATACGAGTTAGAGAGGTCGAAGAACGTAGAGTTGC 244 Query 420 AGCATAAAGAACTGTCAAATGGAGTGTGTGCCGATGAATCTAATGGTCAAAGGATGGAGC 479 |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct 245 AGCATAAAGAACTGTCGAATGGAGTGTGTGCCAATGAATCTAATAGTCAAAGGATAGAGC 304 Query 480 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAATCAGTTCTAATGGCATGGAGAC-T 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | | Sbjct 305 ACTTAGCAAAGTCTCCGCGGCTTTATGCTCAGGAAAACAGTTCTAATGGCATGGAG-CGT 363 Query 539 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTAATAACAAATTGAAG 598 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 364 ATTTGCTCTCATGAAGTGCTCCAAGATGGTGGATTTAACAGTTTTACTAACAAATTGAAG 423 Query 599 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 AGGAAGGCATCATTTAAACTTTCATGGGGATGTAAGGGGATGGCTAATGATCAACACAAA 483 Query 659 AAAGAAATTGTTTCGTTTGAGAGAGGGAATATCAGCACAGCAGAGCGCAGTAGTAAACAG 718 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 484 AAAGAAATTGTTTCGTTCGAGAGAGGGAATATCAGTACAGCAGAGCGCAGTAGTAAACAG 543 Query 719 ATTTCACTGACATGGGAGTCTGATCCACAAACTGTACTTATTATCACTAAGCCTAATTCA 778 |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 544 ATTTCATTGACATGGGAGTCTGATCCACAAACTGTGCTTATTATCACTAAACCTAATTCA 603 Query 779 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 ACTTCCGTGCGAGTTCTCTCTGTGGATATGGTCAGATGGTTGAGAACGCAAAAAGGACTA 663 Query 839 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 AATATTTATGTGGAACCTCGAGTAAAGGAAGAACTCTTATCAGAATCAAGTTCCTTCAAC 723 Query 899 TTCGTACAAACTTGGGAAGATGTTATGATTTATGATGCAGACAAGGAAATTTCACTTCTA 958 ||||||||||||| | | || | ||| ||||||||||||||||||||| Sbjct 724 TTCGTACAAACTT-----G--G----GA---A-GAT---GACAAGGAAATTTCACTTCTA 765 Query 959 CACACAAAGGTTGACCTTCTTATAACTCTTGGTGGGGATGGCACAGTGCTATGGGCTGCA 1018 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 766 CACACAAAAGTTGACCTTCTTATAACTCTTGGTGGGGACGGCACAGTGCTATGGGCAGCA 825 Query 1019 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 TCGATGTTTAAAGGACCAGTGCCTCCAATTGTTCCATTCTCCATGGGATCTCTTGGATTT 885 Query 1079 ATGACTCCTTTTCACAGCGAACAATACCGAGATTGTCTTGAAGCGATTTTGAAGGGTCCT 1138 ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 886 ATGACTCCTTTCCACAGCGAACAATACCGAGATTGTCTTGAAGCGGTTTTGAAAGGTCCA 945 Query 1139 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAA-CACA 1197 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 946 ATCAGTATAACACTACGACACAGGTTGCAGTGTCACATCATCAGAGATAAAGCAACCA-A 1004 Query 1198 TGAATATGAACCAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1257 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 TGAATATGAAACAGAGGAGACTATGCTTGTTCTGAATGAAGTCACCATTGACCGTGGAAT 1064 Query 1258 ATCTTCTTACCTCACAAACCTTGAATGCTACTGTGACAACTCATTCGTCACATGTGTGCA 1317 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1065 ATCTTCTTACCTCACAAACCTCGAATGCTACTGCGACAACTCATTCGTCACATGTGTGCA 1124 Query 1318 AGGCGATGGACTTATACTGTCTACAACATCTGGTAGCACCGCGTATTCACTTGCTGCTGG 1377 |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1125 AGGCGATGGACTAATATTGTCTACAACATCTGGTAGCACCGCGTATTCACTCGCTGCTGG 1184 Query 1378 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1185 AGGGTCAATGGTCCATCCTCAGGTTCCTGGGATCTTATTCACGCCTATCTGTCCGCATTC 1244 Query 1438 TCTATCATTCCGCCCACTAATATTACCGGAACACGTGACAGTGAGAGTCCAAGTGCCATT 1497 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1245 TCTATCATTCCGCCCACTGATATTACCGGAACACGTGACAGTGAGAGTGCAAGTGCCATT 1304 Query 1498 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1305 CAACAGCAGAAGCTCCGCTTGGGTCTCCTTTGATGGGAAAGACCGGAAACAGCTTGAAGC 1364 Query 1558 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGTCAAGTTGA 1617 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1365 AGGGGATGCACTAGTGTGTAGCATGGCACCATGGCCCGTCTCAACCGCTTGCCAAGTTGA 1424 Query 1618 ATCCACTAACGACTTCTTACGCAGCATCCACGATGGTCTTCACTGGAACCTAAGAAAGAC 1677 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1425 ATCCACCAACGACTTCTTACGCAGCATCCACGATGGCCTTCACTGGAACCTAAGAAAGAC 1484 Query 1678 TCAATCTGCTGATGGACCT 1696 |||||| ||||| || ||| Sbjct 1485 TCAATCGGCTGACGGGCCT 1503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72980909420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5