BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G21110.1

Length=1710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930058 jgi|Araly1|930058|scaffold_302515.1                       2111    0.0  


> Ahg930058 jgi|Araly1|930058|scaffold_302515.1
Length=1276

 Score = 2111 bits (1143),  Expect = 0.0
 Identities = 1226/1267 (97%), Gaps = 2/1267 (0%)
 Strand=Plus/Plus

Query  250   TGTTTCTGGAATGGCTCAGTGTGTGAGGTCAACTCTAAATCCTGTGAGAACACCCCAGAG  309
             |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct  11    TGTTTCTGGAATGGCTCAGTGTGTAAGGTCAACTCTAAATCCTTTGAGAACACCCCACAG  70

Query  310   CTTTACTAGGAAAGCGTATGTGAAAAGCCCAGCTTTTGCATCAGTCTCGTTCCTTCGAGC  369
             | ||||||||| || || ||| |||| |||||||||||||||||||||||||||| || |
Sbjct  71    CGTTACTAGGACAGTGTCTGTAAAAAACCCAGCTTTTGCATCAGTCTCGTTCCTTAGAAC  130

Query  370   AGTACCGGAGTTCAACAAATACCCAAAACCTTGTTCATTGGTTATGTCTTGCCAGGGCAA  429
             | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct  131   ATTACCGGAGTTCAAGAAATATCCAAAACCCTGTTCATTGGTTATGTCTTGCCAGGGCAA  190

Query  430   GGCT-CAAAACCAGCAGGAGGAGCGACCACAACTGTCTCTTGACGATTTAGTCACGAGTA  488
             || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  191   GG-TCCAAAACCAGCAGGAGGAGCGACCGCAACTGTCTCTTGACGATTTAGTCACGAGTA  249

Query  489   ACCGGAAAGGGGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA  548
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  250   ACCGGAAAGGAGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA  309

Query  549   CTAATCTTCTTGCCACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA  608
             | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310   CGAATCTTCTTGCGACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA  369

Query  609   TTTATGATGCTGGTGATTATCTGGTTCTTATTACAACTGATCGGTTGAGTGCATTCGACA  668
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  370   TTTATGATGCTGGTGATTATCTGATTCTTATTACAACTGATCGGTTGAGTGCATTTGACA  429

Query  669   GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT  728
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430   GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT  489

Query  729   TCAATAACACACAGCACATAACTCCAAATGCAATCGTTTCATCTCCTGATAGAAATGTTG  788
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  490   TCAATAACACACAGCACATAACTCCAAATGCCATCGTTTCATCTCCTGATAGAAATGTTG  549

Query  789   TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG  848
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  550   TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG  609

Query  849   GAAGTACTGACACATCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTACTGTGGGA  908
             ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  610   GAAGTACTGACACGTCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTATTGTGGGA  669

Query  909   ATGAGCTCTCAGATGGATTAGTTAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA  968
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  670   ATGAGCTCTCAGATGGATTAGTAAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA  729

Query  969   CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAAGGTGGAT  1028
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  730   CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAACGTGGAT  789

Query  1029  TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG  1088
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  790   TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG  849

Query  1089  GGCAGGGGGTGGCCAAGAAACATGGACTGATATTGGTGGACACAAAGTATGAGTTTGGAA  1148
             ||||| | || |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  850   GGCAGCGTGTTGCCAAGGAACATGGACTGATACTGGTGGACACAAAGTATGAGTTTGGAA  909

Query  1149  GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT  1208
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  910   GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT  969

Query  1209  ACTGGCTTGCGGGTTCATATGAAGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG  1268
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  970   ACTGGCTTGCGGGTTCATATGAGGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG  1029

Query  1269  ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTGCAATCCGTATGAGGACGAGGTCC  1328
             |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct  1030  ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTCCAATCCTTACGAGGACGAGGTCC  1089

Query  1329  TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG  1388
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1090  TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG  1149

Query  1389  AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA  1448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1150  AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA  1209

Query  1449  TCTCAAGGAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTAATGTAAC  1508
             ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  1210  TCTCAAGAAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTTATATAAC  1269

Query  1509  CTTTAGC  1515
              ||||||
Sbjct  1270  TTTTAGC  1276



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 64143972580


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5