BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21110.1 Length=1710 Score E Sequences producing significant alignments: (Bits) Value Ahg930058 jgi|Araly1|930058|scaffold_302515.1 2111 0.0 > Ahg930058 jgi|Araly1|930058|scaffold_302515.1 Length=1276 Score = 2111 bits (1143), Expect = 0.0 Identities = 1226/1267 (97%), Gaps = 2/1267 (0%) Strand=Plus/Plus Query 250 TGTTTCTGGAATGGCTCAGTGTGTGAGGTCAACTCTAAATCCTGTGAGAACACCCCAGAG 309 |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| || Sbjct 11 TGTTTCTGGAATGGCTCAGTGTGTAAGGTCAACTCTAAATCCTTTGAGAACACCCCACAG 70 Query 310 CTTTACTAGGAAAGCGTATGTGAAAAGCCCAGCTTTTGCATCAGTCTCGTTCCTTCGAGC 369 | ||||||||| || || ||| |||| |||||||||||||||||||||||||||| || | Sbjct 71 CGTTACTAGGACAGTGTCTGTAAAAAACCCAGCTTTTGCATCAGTCTCGTTCCTTAGAAC 130 Query 370 AGTACCGGAGTTCAACAAATACCCAAAACCTTGTTCATTGGTTATGTCTTGCCAGGGCAA 429 | ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 131 ATTACCGGAGTTCAAGAAATATCCAAAACCCTGTTCATTGGTTATGTCTTGCCAGGGCAA 190 Query 430 GGCT-CAAAACCAGCAGGAGGAGCGACCACAACTGTCTCTTGACGATTTAGTCACGAGTA 488 || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 191 GG-TCCAAAACCAGCAGGAGGAGCGACCGCAACTGTCTCTTGACGATTTAGTCACGAGTA 249 Query 489 ACCGGAAAGGGGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA 548 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 ACCGGAAAGGAGAGGTTCTTGGCACAATCAAAGACTCGCTTTCTAATTGTCTCTCTGAGA 309 Query 549 CTAATCTTCTTGCCACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA 608 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 CGAATCTTCTTGCGACTGTTCCTGGTCTGAAATCTAGAATCAAGGGAAAGGTCAGAGATA 369 Query 609 TTTATGATGCTGGTGATTATCTGGTTCTTATTACAACTGATCGGTTGAGTGCATTCGACA 668 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 370 TTTATGATGCTGGTGATTATCTGATTCTTATTACAACTGATCGGTTGAGTGCATTTGACA 429 Query 669 GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 GAAACCTTGCTTCAATTCCCTTCAAAGGCCAGGTTCTTAATGAGACAAGTTTGTGGTGGT 489 Query 729 TCAATAACACACAGCACATAACTCCAAATGCAATCGTTTCATCTCCTGATAGAAATGTTG 788 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 490 TCAATAACACACAGCACATAACTCCAAATGCCATCGTTTCATCTCCTGATAGAAATGTTG 549 Query 789 TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG 848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TTATCGCAAAGAAATGCTCGGTTTTTCCCATAGAGTTTGTGGTTAGAGGATATGTGACTG 609 Query 849 GAAGTACTGACACATCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTACTGTGGGA 908 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 610 GAAGTACTGACACGTCTTTATGGACGGTGTACAATAAAGGTGTTCGGAACTATTGTGGGA 669 Query 909 ATGAGCTCTCAGATGGATTAGTTAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA 968 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 670 ATGAGCTCTCAGATGGATTAGTAAAAAACCAGAAGCTTCCAGCTAATATACTTACACCAA 729 Query 969 CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAAGGTGGAT 1028 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 730 CAACTAAGGCTGCGGATCATGATGTGCCCATCTCTCCAAATGAGATAGTTGAACGTGGAT 789 Query 1029 TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790 TCATGACTCAAGCTGAATTTGATGAAGCAAGTATGAAAGCTTTGAGCTTGTTTGAGTTTG 849 Query 1089 GGCAGGGGGTGGCCAAGAAACATGGACTGATATTGGTGGACACAAAGTATGAGTTTGGAA 1148 ||||| | || |||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 850 GGCAGCGTGTTGCCAAGGAACATGGACTGATACTGGTGGACACAAAGTATGAGTTTGGAA 909 Query 1149 GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT 1208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 GAAGTAGTGATGGCTCAATCTTATTGATTGATGAGATTCATACACCCGATTCCAGCAGAT 969 Query 1209 ACTGGCTTGCGGGTTCATATGAAGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG 1268 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 970 ACTGGCTTGCGGGTTCATATGAGGAGCGCTTCCAAAAAGGCCTGGAGCCTGAAAATGTTG 1029 Query 1269 ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTGCAATCCGTATGAGGACGAGGTCC 1328 |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| Sbjct 1030 ATAAGGAGTTCCTAAGATTGTGGTTCAAAGAGAACTCCAATCCTTACGAGGACGAGGTCC 1089 Query 1329 TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG 1388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 TGCCTGCTGCTCCAGCAGAACTCGTGACTGAATTAGCTTGGCGGTACATTTTCTTGTATG 1149 Query 1389 AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA 1448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 AAACTATCACTGGATCAAGAATTGACATTATTCCGACTCAGGAACCAATACATGACCGAA 1209 Query 1449 TCTCAAGGAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTAATGTAAC 1508 ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1210 TCTCAAGAAACACAAGCCAAGCACTTTCATCTCTCCGTCAACTTTGATCTTTTATATAAC 1269 Query 1509 CTTTAGC 1515 |||||| Sbjct 1270 TTTTAGC 1276 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64143972580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5