BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21150.1 Length=904 Score E Sequences producing significant alignments: (Bits) Value Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 961 0.0 > Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 Length=1266 Score = 961 bits (520), Expect = 0.0 Identities = 642/700 (92%), Gaps = 11/700 (2%) Strand=Plus/Plus Query 138 GAGATCGACTCAATGGTGAGCTTTTGCGAGCTTTGTGGTGCCGAAGCTGATCTCCATTGT 197 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 568 GAGATCGACTCAATGGTGAGCTTCTGCGAGCTATGTGGTGCCGAAGCTGATCTCCACTGC 627 Query 198 GCCGCGGACTCTGCCTTCCTCTGCCGTTCTTGTGACGCTAAGTTCCATGCCTCAAATTTT 257 ||||||||||| || |||||||||||||| || |||||||||||||||| ||||||||| Sbjct 628 GCCGCGGACTCAGCTTTCCTCTGCCGTTCATGCGACGCTAAGTTCCATGGCTCAAATTTC 687 Query 258 CTCTTCGCTCGTCATTTCCGGCGTGTCATCTGCCCAAATTGCAAATCTCTTACTCAAAAT 317 |||||||||||||||||||| || ||||||||||| |||||||||||||| |||||| || Sbjct 688 CTCTTCGCTCGTCATTTCCGTCGCGTCATCTGCCCTAATTGCAAATCTCTCACTCAAGAT 747 Query 318 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACATGTTGTTCAG-A--ATCG 374 ||||||||||||||||||||||||||||||||||||||||| || ||||| | | |||| Sbjct 748 TTCGTTTCTGGTCCTCTTCTTCCTTGGCCTCCACGAACAACCTGCTGTTCTGAATCATCG 807 Query 375 ---TCGTCTTCTTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCA 431 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 TCTTCGTCTTCGTCTTGCTGCTCGTCTCTTGACTGTGTCTCAAGCTCCGAGCTATCGTCG 867 Query 432 ACGACGCGTGACGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAATGCCAAGGCCGTT 491 |||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 868 ACGACGGGTGGCGTAAACAGAGCGCGAGGGAGGGAAAACAGAGTGAAGGCTAAGGCCGTT 927 Query 492 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAGTTAGGACTAAACAGG 551 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 928 GCGGTTACGGTGGCGGATGGCATTTTTGTAAATTGGTGTGGTAAATTAGGACTAAAGAGA 987 Query 552 GATTTAACAAACGCTGTCGTTTCATATGCGTCTTTGGCTTTGGCTGT---GGAGACGAGG 608 ||||||||||||||||||||||| |||||||| | |||||| |||| |||||||| | Sbjct 988 GATTTAACAAACGCTGTCGTTTCGTATGCGTCACTCGCTTTGTCTGTGGCGGAGACGAAG 1047 Query 609 CCAAGAGCGACGAAGAGAGTG-TTCTTAGCGGCGGCGTTTTGGTTCGGCGTTAAGAACAC 667 || |||||||||||||| ||| || |||||||| |||||||||||||||||||||||||| Sbjct 1048 CCGAGAGCGACGAAGAGGGTGATT-TTAGCGGCAGCGTTTTGGTTCGGCGTTAAGAACAC 1106 Query 668 GACGACGTGGCAGAATTTAAAGAAAGTAGAAGATGTGACTGGAGTTTCAGCTGGGATGAT 727 || || |||||||| ||||||||| || ||||||||||| |||||| ||||||||||||| Sbjct 1107 GATGAAGTGGCAGAGTTTAAAGAAGGTGGAAGATGTGACGGGAGTTGCAGCTGGGATGAT 1166 Query 728 TCGAGCGGTTGAAAGCAAATTGGCGCGTGCAATGACGCAGCAGCTTAGACGGTGGCGCGT 787 ||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||| Sbjct 1167 TCGAGCGGTTGAAAGCAAAATGGCCCGTGTAATGACGCTGCAGCTTAGACGGTGGCGCGT 1226 Query 788 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 827 |||||||||||||||||||||||||||||||||||||||| Sbjct 1227 GGATTCGGAGGAAGGATGGGCTGAAAACGACAACGTTTGA 1266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33510044043 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5