BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21200.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930074 jgi|Araly1|930074|scaffold_302531.1 1580 0.0
> Ahg930074 jgi|Araly1|930074|scaffold_302531.1
Length=987
Score = 1580 bits (855), Expect = 0.0
Identities = 951/996 (95%), Gaps = 11/996 (1%)
Strand=Plus/Plus
Query 45 CTCTCTATCAGAGCAACCAAAATGCAACTCCAAACCCAATCCTTCGCTCTCAATCTTCTG 104
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CTCTCTCTCAGAGCAACCAAAATGCAACTCCAAACCCAATCCTTCGCTCTCAATCTTCTC 61
Query 105 CCATCTCCAAATTTCGCCAAACCCATCGAGAGACGTGAATTCATCTCTCTAAAACGAGAC 164
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 CCATCTCCGAATTTCGCCAAACCCATCGAAAGACGTGAATTCATCTCTCTAAAACGAGAC 121
Query 165 CCATCTCGTCCAATTTCACTCCGATGTTCCGTTTCCACGACTTTGGATACTCCGGCGACC 224
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 122 CCATCTCGTCCAATTTCTCTCCGATGTTCCGTTTCCACGGCTTTGGATACTCCGGCGACC 181
Query 225 GCTTCGACCCACAAGCCCTTTCCGGCGGAGGTTTCAAGGAGTATCATGGAGCTTTCATCT 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 182 GCTTCGACCCACAAGCCCTTTCCGGCGGAGGTTTCAAGGAGTATCATGGAGCTTTCCTCC 241
Query 285 GTTGGAACTCTCTCCACTTTGACCCACGACGGTTGGCCTCTCGGCGTAGGAGTTCGCTTC 344
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 242 GTTGGAACTCTCTCCACTTTGACCCACGACGGCTGGCCTCTCGGCGTAGGAGTTCGCTTC 301
Query 345 GCCGTTGACAAAGATGGCACTCCTGTTCTTTGCCTCAATCGCTCTGTCTCTCCTGACAAG 404
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 302 GCCGTTGACAAAGATGGCACTCCTGTTCTATGCCTCAATCGCTCTTTCTCTCCTGACAAG 361
Query 405 AGGTCTGCTCTTCATGTTCAGTTAGAACAATGTGGATTGAGGACTCCTCAGTGTACGATA 464
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 362 AGGTCTGCTCTTCATGTTCAGTTAGAACAATGTGGATTAAGGACTCCTCAGTGTACGATA 421
Query 465 CAAGGTAGCATTGGTCGACCTGGAGACGATACTGTTCTAAAGCGTCTTAGTGCTACATGG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CAAGGTAGCATTGGTCGACCTGGAGACGATACTGTTCTAAAGCGTCTTAGTGCTACATGG 481
Query 525 AGGGAAAAGTTTGGCGAAGAAGTTAAGGAAGACAGTTTATATGTTGTTGCAGTTGACCGT 584
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 482 AGGGAAAAGTTTGGCGAAGAAGTTGAGGAAGACAGTTTATATGTTGTTGCAGTTGACCGT 541
Query 585 GTTCTCCAAATGGAAGATTTCATGGAGGACGGAATCTGGGTGGCGTCATCAGATTACAAA 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 542 GTTCTCCAAATGGAAGATTTCATGGAGGACGGAATCTGGGTGGCGTCATCAGATTATAAA 601
Query 645 AATGCAAGTCCTGACCCTCTTC-GAGATATTGCAGAAGATATTGTCAACCAGATTAACGC 703
|||||||||||||||||||| | ||||| |||||||||| ||||||||| | |||||| |
Sbjct 602 AATGCAAGTCCTGACCCTCT-CAGAGATGTTGCAGAAGACATTGTCAACAATATTAACAC 660
Query 704 TAACAACATGGAAGACATCTTCCGTTTCTGCAATGTATACGTGGATCTAGACTTTGTGGT 763
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 TAACAACATGGAAGACATTTTCCGTTTCTGCAACGTATACGTGGATCTAGACTTTGTGGT 720
Query 764 TTCAGAAACAAAGATGATATGGATGGATAGGCTTGGATTCGACCTTCGGGTATGGTCTCC 823
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 721 TTCGGAAACAAAGATGATATGGATGGATAGGCTTGGATTTGACCTCCGAGTATGGTCTCC 780
Query 824 ACGAGGTGTATATGATGTGAGGATTCCATTTCCAATGGAAGTAACAGATGAAAAGGGAGC 883
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 ACGAGGTGTATATGATGTGAGGATTCCATTTCCAATGGAAGTAACAGATGAGAAGGGAGC 840
Query 884 AAAATCATCCTTCAATGGAATGTCACAGCTCGCTTGGGAAGTAGAGAAAAGCTATTGCCC 943
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AAAATCATCCTTCAATGGGATGTCACAGCTTGCTTGGGAAGTAGAGAAAAGCTATTGCCC 900
Query 944 TGCAGATTTCAACAAGGTCAAACTACTTAAGCAAGTTGTGGGATCATCTCATTCTCACAA 1003
|||| |||||||||||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 901 TGCAAATTTCAACAAGGTCAAACTATTTAAGCAAGTTGTGGGATCATC--A--C--ACAA 954
Query 1004 GGGAGGAGGACAATAACAATACTAATGACttttttt 1039
|||| || |||||||| | ||| |||||||||||
Sbjct 955 GGGACGA---CAATAACAGTTCTATTGACTTTTTTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5