BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21230.1 Length=1957 Score E Sequences producing significant alignments: (Bits) Value Ahg479643 jgi|Araly1|479643|fgenesh2_kg.3__2344__AT3G21230.1 2868 0.0 > Ahg479643 jgi|Araly1|479643|fgenesh2_kg.3__2344__AT3G21230.1 Length=1961 Score = 2868 bits (1553), Expect = 0.0 Identities = 1815/1941 (94%), Gaps = 20/1941 (1%) Strand=Plus/Plus Query 25 AGTAAAGAAGAATTAGAATCTCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 84 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 33 AGT-AAGAAGAATTAGAATATCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 91 Query 85 CAaagaagatagatcaagaagacgaagaagaagaaCCTTCTCATGATTTCATTTTCCGAT 144 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 92 CAAAGAAGATAGATCAAGAAGAAGAAGAAGAAGAACCTTCTCATGATTTCATTTTCCGAT 151 Query 145 CTAAGCTTCCTGATATCTTCATCCCTAACCACCTCCCTCTCACCGATTACGTCTTCCA-A 203 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 152 CTAAGCTTCCTGATATCTTCATCCCCAATCACCTCCCTCTCACCGATTACGTCTTCCACA 211 Query 204 AGGTTCTCCGGCGATGGCGACGGAGATTCCTCAACAACCTGTATCATCGACGGTGCCACT 263 | ||||||| |||||||||||| |||||||| || || |||||||| ||||||||||| Sbjct 212 A-ATTCTCCGCCGATGGCGACGGCGATTCCTCCACCACTTGTATCATTGACGGTGCCACA 270 Query 264 GGCCGTATTTTGACCTACGCCGATGTACAAACCAACATGCGGAGGATAGCTGCCGGAATC 323 |||||||| || ||||||||||||||||||| |||||||| |||||| |||||||||||| Sbjct 271 GGCCGTATCTTAACCTACGCCGATGTACAAATCAACATGCAGAGGATTGCTGCCGGAATC 330 Query 324 CACCGGCTCGGGATCCGCCACGGAGACGTCGTAATGCTTCTCCTCCCGAACTCGCCGGAG 383 |||||| |||||||||||||||| |||||||||||||| || ||||||||||| |||||| Sbjct 331 CACCGGTTCGGGATCCGCCACGGTGACGTCGTAATGCTCCTTCTCCCGAACTCACCGGAG 390 Query 384 TTTGCTCTGTCTTTTCTTGCCGTTGCTTACCTTGGAGCCGTTTCCACTACCGCGAATCCG 443 |||||| | ||||| || ||||| |||||||||||||| || ||||| |||||||||||| Sbjct 391 TTTGCTTTATCTTTCCTCGCCGTGGCTTACCTTGGAGCTGTCTCCACCACCGCGAATCCG 450 Query 444 TTCTACACTCAGCCGGAGATCGCTAAACAGGCTAAAGCCTCCGCCGCGAAGATGATCATC 503 ||||| || |||||||| || || ||||| || ||||||||||||||||||||||||||| Sbjct 451 TTCTATACGCAGCCGGAAATAGCAAAACAAGCAAAAGCCTCCGCCGCGAAGATGATCATC 510 Query 504 ACGAAGAAATGTTTAGTCGATAAACTAACAAACCTCAAAAACGACGGCGTTTTGATCGTT 563 ||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||| |||||| Sbjct 511 ACGAAGAAATGTTTAGTAGATAAGCTAACAATCCTTAAAAACGACGGCGTTTTAATCGTT 570 Query 564 TGCCTAGACGATGACGGTGACAACGGCGTTGTTTCGTCGAGTGATGATGGTTGCGTGAGT 623 || |||| |||||||||| |||||||||||||| ||| ||||||||||||||||||| Sbjct 571 TGTGTAGATGATGACGGTG---ACGGCGTTGTTTCGCCGACTGATGATGGTTGCGTGAGT 627 Query 624 TTCACGGAACTGACTCAAGCGGACGAAACAGAACTT-CTAAAACCTAAAATATCGCCGGA 682 || |||||||||||||||| ||||||||||| ||| || |||||| | || |||||||| Sbjct 628 TTTACGGAACTGACTCAAGATGACGAAACAGAGCTTCCT-AAACCTGAGATCTCGCCGGA 686 Query 683 AGACACGGTGGCGATGCCGTACTCTTCCGGAACAACGGGACTTCCAAAGGGAGTGATGAT 742 ||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 687 TGACACAGTGGCGATGCCGTACTCCTCCGGGACAACGGGACTGCCAAAGGGAGTGATGAT 746 Query 743 TACTCACAAGGGTTTAGTTACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACCT 802 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 747 TACTCACAAGGGTTTGGTAACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACC- 805 Query 803 TA-ACTTCACGGCCAATGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 861 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 806 TACACTTCACGGCCAGTGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 865 Query 862 TCGACGCGTTGATGCTTTCGGCGATGAGAACCGGTGCAGCGTTACTGATCGTGCCGAGGT 921 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 866 TCGACGCGTTAATGCTTTCGGCGATGAGAACCGGTGCGGCGTTACTGATCGTGCCTAGGT 925 Query 922 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTTGTGCCGGTGG 981 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 926 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTGGTTCCGGTGG 985 Query 982 CTCCTCCGGTGGTTTTAGCATTCA-TTAAATCCCCTGAGACGGAGAGATACGACTTGAGC 1040 |||||||||| ||| ||||||| | |||| ||||| || ||||||||||||||||||||| Sbjct 986 CTCCTCCGGTTGTTCTAGCATT-AGTTAAGTCCCCGGATACGGAGAGATACGACTTGAGC 1044 Query 1041 TCGGTGAGAATTATGCTATCAGGTGCAGCTACACTAAAGAAGGAGCTTGAAGACGCCGTG 1100 ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1045 TCGGTGAGAATGATGCTATCGGGTGCAGCTACATTAAAGAAGGAGCTTGAAGACGCCGTG 1104 Query 1101 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGAATGACCGAGTCCGGAACG 1160 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1105 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGTATGACCGAGTCCGGAACG 1164 Query 1161 GTAGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCATGTGGG 1220 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1165 GTGGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCGTGTGGG 1224 Query 1221 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACCGA-AACCGGAATCTCCTTGCC 1279 ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| || Sbjct 1225 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACC-ATAACCGGAATATCCTTACC 1283 Query 1280 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGTCATCAGCTCATGAAAGGTTATTTGAA 1339 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1284 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGCCATCAGCTCATGAAAGGTTATTTGAA 1343 Query 1340 TGATCCGGAAGCTACTGCACGAACCATAGACAAAGACGGGTGGTTACATACAGGAGATAT 1399 |||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1344 TGATCCAGAATCTACTGCGCGAACCATAGACAAAGACGGGTGGTTACACACAGGAGATAT 1403 Query 1400 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1404 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1463 Query 1460 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1523 Query 1520 TATCGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAGGTTCCAGTAGC 1579 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1524 TATTGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAAGTTCCAGTAGC 1583 Query 1580 ATTTGTAGCAAGATCTCAAGGGTCTCAGTTAACTGAAGATGATGTCAAGAGTTACGTAAA 1639 |||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1584 ATTTGTAGTAAGATCTGAAGGGTCTCAGTTAACTGAAGAAGATGTCAAGAGTTATGTAAA 1643 Query 1640 CAAACAGGTGGTTCACTACAAGCGGATTAAGATGGTGTTTTTCATAGAAGTTATACCAAA 1699 ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || Sbjct 1644 CAAACAGGTGGTTCACTACAAGCGGATCAAGATGGTGTTTTTCATAGAAGCTATACCGAA 1703 Query 1700 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTGCGAGCTAAATTGGAAACC-ATGTGCT 1758 ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 1704 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTCCGAGCTAAATTGGAAACCGA-GTGCT 1762 Query 1759 CTAAATAGACACAAGAGAGTTTCAAATGTATGTGTAAATTCGAACATTATAGTCTCTAAG 1818 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1763 CTAAATAGACACAAGAGAGTTTCAATTGTATGTGTAAATTCGAACATTAAAGTCTCTAAG 1822 Query 1819 AAGTAAGGAGTAAGAAGCAAGTA-TTTGGTATTTGATTTGGTTTTCACGAGATCAATCAT 1877 ||||||| |||||||||||||| |||||||||||||||||||| || || ||||||||| Sbjct 1823 AAGTAAGCAGTAAGAAGCAAGTTGTTTGGTATTTGATTTGGTTT-CAAGACATCAATCAT 1881 Query 1878 GTAAAGTCAACAAATCTAGGAAACCTAAAGCTA-AGCTACCCTCAGAAACATAAATTCAT 1936 ||||| || ||| |||||||| ||||||||||| | |||||||||||||||||| ||||| Sbjct 1882 GTAAATTCTACACATCTAGGAGACCTAAAGCTATA-CTACCCTCAGAAACATAAGTTCAT 1940 Query 1937 TTCCTATAATCATCATTTCAC 1957 ||||||||||||||||||||| Sbjct 1941 TTCCTATAATCATCATTTCAC 1961 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73552263095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5