BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21240.1 Length=1964 Score E Sequences producing significant alignments: (Bits) Value Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273 2390 0.0 Ahg923657 jgi|Araly1|923657|scaffold_104938.1 1360 0.0 > Ahg905145 jgi|Araly1|905145|Al_scaffold_0003_2273 Length=1620 Score = 2390 bits (1294), Expect = 0.0 Identities = 1522/1631 (93%), Gaps = 20/1631 (1%) Strand=Plus/Plus Query 112 AGT-GTAGTAATGACGTCATTTTCCGATCGAGATTGCCTGATATATACATCCCTAACCAC 170 ||| |||||||||||||||||||||| |||| |||||| ||||| || |||||||||||| Sbjct 4 AGTAGTAGTAATGACGTCATTTTCCGGTCGAAATTGCCGGATATTTATATCCCTAACCAC 63 Query 171 CTCCCACTCCACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTG 230 || |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 64 CTACCACTCCACGACTACATCTTCGAAAACATCTCTGAGTTCGCCGCTAAACCATGTTTG 123 Query 231 ATCAACGGTCCCACCGGCGAAGTATACACCTACGCCGATGTCCACGTAACATCTCGGAAA 290 |||||||||||||||||||| ||||||||||||||||| || |||| | ||| |||||| Sbjct 124 ATCAACGGTCCCACCGGCGAGGTATACACCTACGCCGACGTACACGCCATATCGCGGAAA 183 Query 291 CTCGCCGCCGGTCTTCATAA-CCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCT 349 ||||||||||||||||| || |||||||||| ||||||||||| |||||| ||||||| Sbjct 184 CTCGCCGCCGGTCTTCA-AATAGTCGGCGTGAACCAACACGACGTCGTAATGCTCCTCCT 242 Query 350 CCCGAACTCTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTC-CTTCATCGGCGCAATCA 408 |||||||||||| |||||||||||||||||||| || || || | ||||||||||||||| Sbjct 243 CCCGAACTCTCCAGAAGTAGTCCTCACTTTCCTCGCAGCTTCAC-TCATCGGCGCAATCA 301 Query 409 CCACCTCCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCCG 468 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 302 CCACTTCAGCGAACCCGTTCTTCACTCCGGCGGAGATCTCTAAACAAGCCAAAGCCTCCG 361 Query 469 CGGCGAAACTCATCGTCACTCAATCCCGTTACGTCGATAAAATCAAGAACCTCCAAAACG 528 | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 362 CCGCGAAACTCATCGTCACTCAATCTCGTTACTTCGATAAAATCAAGAACCTCCAAAACG 421 Query 529 ACGGCGTTTTGATCGTCACCACCGACTCCGACGCCATCCCCGAAAACTGCCTCCGTTTCT 588 ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 422 ACGGCGTCTTGATCGTCACCACCGACTCCGACGTCATCCCCGAAAACTGCCTCCGCTTCT 481 Query 589 CCGAGTTAACTCAGTCCGAAGAACC-ACGAGTGGACTCAA-TACCGGAGAAGATTTCGCC 646 ||||||| |||||||||| | ||| ||| | |||| | || | |||||||||| Sbjct 482 CCGAGTTGACTCAGTCCGGCG-ACCTCCGA---G--TCAACT-CC---G-AGATTTCGCC 530 Query 647 AGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGGGTCTCCCCAAAGGAGTGAT 706 ||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||| Sbjct 531 AGACGACGTCGTGGCGCTTCCTTTCTCCTCTGGCACGACGGGTCTGCCCAAGGGAGTGAT 590 Query 707 GCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAATCCGAA 766 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 591 GCTAACACATAAAGGTCTCGTCACGAGCGTGGCGCAGCAAGTCGACGGCGAGAACCCAAA 650 Query 767 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATATACGC 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 651 TCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGCCTATGTTCCATATCTACGC 710 Query 827 TCTCAACTCCATCATGCTCTGTAGTCTCAGAGTTGGTGCCACGATCTTGATAATGCCTAA 886 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 711 TCTTAACTCCATCATGCTCTGTAGTCTCAGAGTCGGTGCCACGATCTTGATAATGCCTAA 770 Query 887 GTTCGAAATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 946 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 ATTCGAGATCACTCTCTTGTTAGAGCAGATACAAAGGTGTAAAGTCACGGTGGCTATGGT 830 Query 947 CGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 1006 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 831 CGTGCCACCGATCGTTTTAGCTATTGCAAAGTCGCCGGAGACGGAGAAGTATGATCTGAG 890 Query 1007 CTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAGGAGCTTGAAGATGCTAT 1066 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 891 TTCGGTTAGGATGGTTAAGTCTGGAGCAGCTCCTCTTGGTAAAGAACTTGAAGATGCTAT 950 Query 1067 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCAGGTCC 1126 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 951 TAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGCTATGGGATGACAGAAGCGGGTCC 1010 Query 1127 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAGTCAGGAGCATG 1186 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1011 GGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCGTTTCCAGTGAAATCAGGAGCATG 1070 Query 1187 TGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACAGGAGATTCTTT 1246 |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1071 TGGTACAGTGGTGAGGAACGCCGAGATGAAGATACTTGATCCAGACACCGGAGATTCCTT 1130 Query 1247 GCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTGGCAACCAAATCATGAAAGGCTATC 1305 ||||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1131 GCCTAGGAATCAAGCC-GGCGAAATCTGCATTCGTGGCAACCAAATCATGAAAGGCTATC 1189 Query 1306 TCAATGACCCCTTGGCCACGGCATCGACGATCGATAAAGATGGTTGGCTTCACACTGGAG 1365 ||||||| || |||| || |||||||||||||||||||| |||||||||||||| |||| Sbjct 1190 TCAATGATCCGGTGGCTACCGCATCGACGATCGATAAAGACGGTTGGCTTCACACAGGAG 1249 Query 1366 ACGTCGGATTTATCGATGATGACGACGAGCTTTTCATTGTGGATAGATTGAAAGAACTCA 1425 |||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 1250 ACGTTGGATTCATCGATGACGACGACGAGCTTTTCATTGTCGATAGATTGAAAGAACTCA 1309 Query 1426 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCATC 1485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1310 TCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAGCTAGAGTCTCTCCTCATAGGTCACC 1369 Query 1486 CAGAAATCAATGATGTTGCTGTCGTCGCCATGAAGGAAGAAGATGCTGGTGAGGTTCCTG 1545 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1370 CTGAAATCAATGATGTTGCTGTCGTCGCAATGAAAGAAGAAGATGCTGGTGAGGTTCCTG 1429 Query 1546 TTGCGTTTGTGGTGAGATCGAAAGATTCAAATATATCCGAAGATGAAATCAAGCAATTCG 1605 | ||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||| Sbjct 1430 TGGCGTTTGTGGTGAGAACGAAAGAGTCGAATATATCCGAAGATGAAATCAAGGAATTCG 1489 Query 1606 TGTCAAAACAGGTTGTGTTTTATAAGAGAATCAACAAAGTGTTCTTCACTGACTCTATTC 1665 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1490 TGTCAAAACAGGTTGTGTTTTATAAGAGGATCAATAAAGTGTTCTTCACTGACTCTATTC 1549 Query 1666 CTAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1725 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 CAAAAGCTCCATCAGGGAAGATATTGAGGAAGGATCTAAGAGCAAGACTAGCAAATGGAT 1609 Query 1726 TAATGAACTAG 1736 ||||||||||| Sbjct 1610 TAATGAACTAG 1620 > Ahg923657 jgi|Araly1|923657|scaffold_104938.1 Length=1714 Score = 1360 bits (736), Expect = 0.0 Identities = 1353/1644 (82%), Gaps = 69/1644 (4%) Strand=Plus/Plus Query 122 TGACGTCATTTTCCGATCGAGA-TTGCCTGATATATACATCCCTAACCACCTCCCACTCC 180 |||||||||||||||||| | | | || ||||| |||||||| ||||||||| | |||| Sbjct 71 TGACGTCATTTTCCGATC-AAAGCTACCGGATATTTACATCCCAAACCACCTCTCTCTCC 129 Query 181 ACGACTACATCTTCGAAAATATCTCAGAGTTCGCCGCTAAGCCATGCTTGATCAACGGTC 240 |||||||||||||| |||| ||||| || |||||| | ||||| ||| | |||||||| | Sbjct 130 ACGACTACATCTTCCAAAACATCTCCGAATTCGCCACCAAGCCTTGCCTAATCAACGGAC 189 Query 241 CCACCGG-CGAAGTATACACCTACGCCGATGTCCACGTAACATCT--CG--GAAACTCGC 295 | ||||| | | || ||||| ||| | || |||||||| ||||| || | || |||| Sbjct 190 CAACCGGAC-ACGTGTACACTTACTCAGACGTCCACGT--CATCTCCCGCCG-AA-TCGC 244 Query 296 CGCCGGTCTTCATAACCTCGGCGTGAAGCAACACGACGTTGTAATGATCCTCCTCCCGAA 355 ||||||| |||| || |||||||| || ||| ||||||| || ||| |||||||||| || Sbjct 245 CGCCGGTTTTCACAAACTCGGCGTTAACCAAAACGACGTCGTCATGCTCCTCCTCCCAAA 304 Query 356 CT-CTCCTGAAGTAGTCCTCACTTTCCTTGCCGCCTCCTTCATCGGCGCAATCACCACCT 414 || | || ||| | |||||| ||||||| ||||| || ||| |||||||||| ||||| Sbjct 305 CTGC-CCCGAATTCGTCCTCTCTTTCCTCGCCGCTTCTTTCCGCGGCGCAATCGCCACCG 363 Query 415 CCGCGAACCCGTTCTTCACTCCGGCGGAGATTTCTAAACAAGCCAAAGCCTCC-GCGGCG 473 ||||||| || |||||||||||||||||||| |||||||||||||||||||| | | Sbjct 364 CCGCGAATCCATTCTTCACTCCGGCGGAGATCGCTAAACAAGCCAAAGCCTCCAAC-TCC 422 Query 474 AAACTCATCGTCACTC-AATCCCGTTACGTCGATAAAATCAAGA-ACCTCC-AAA--ACG 528 ||||||||| |||| | |||| || |||||||| |||||||| | ||||| ||| ||| Sbjct 423 AAACTCATCATCAC-CGAATCTCGCTACGTCGACAAAATCAA-ATCCCTCCAAAAGGACG 480 Query 529 AC-G-G-CG-T-T--T-TG-ATCGTC-ACCACCGACTCCGACGCC-ATCCCCGAAAACTG 577 || | | || | | | || |||| | | || ||| |||| | || ||||| || ||| Sbjct 481 ACGGAGTCGTTATCGTCTGCATCGACGA-CAACGAATCCGTC-CCTATCCCTGACGGCTG 538 Query 578 CCTCCG-TTTCTCCGAGTTAACTCAGTCCGAAGAACCACGAG---T-GGAC-TCAAT--A 629 |||||| ||| |||| || ||||||| | || || | |||| | ||| | ||| | Sbjct 539 CCTCCGATTT-ACCGAATTGACTCAGT-C-AACAA-C-CGAGTCATCAGACGT-AATCGA 592 Query 630 C-CGG-AGAAGATTTCGCCAGAAGACGTCGTGGCGCTTCCTTTCTCATCCGGCACGACGG 687 | ||| | ||||||| || || ||||| ||||||||||||| ||| ||||||||||||| Sbjct 593 CTCGGTTG-AGATTTCACCGGACGACGTGGTGGCGCTTCCTTACTCCTCCGGCACGACGG 651 Query 688 GTCTCCCCAAAGGAGTGATGCTAACACACAAAGGTCTAGTCACGAGCGTGGCGCAGCAAG 747 | || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| Sbjct 652 GACTACCCAAAGGAGTGATGCTGACACACAAAGGACTAGTCACGAGCGTTGCTCAGCAAG 711 Query 748 TCGACGGCGAGAATCCGAATCTTTACTTCAACAGAGACGACGTGATCCTCTGTGTCTTGC 807 ||||||||||||| ||||||||||| ||| |||| || ||||| || |||||||| |||| Sbjct 712 TCGACGGCGAGAACCCGAATCTTTATTTCCACAGCGATGACGTCATACTCTGTGTTTTGC 771 Query 808 CTATGTTCCATATATACGCTCTCAACTCCATCATGCTCTGTAGTC-TCAGAGTTGGTGCC 866 | ||||| ||||| |||||| | ||||| |||||| | ||| ||| || |||||||||| Sbjct 772 CCATGTTTCATATCTACGCTTTGAACTCGATCATGTTGTGTGGTCTTC-GAGTTGGTGCT 830 Query 867 ACGA-TCTTGATAATGCCTAAGTTCGAAATCACTCT-CTTGTTAGAGCAGATACAAAGGT 924 ||| || ||||||||||||| || || || | ||| ||| || |||| ||| || |||| Sbjct 831 GCGATTC-TGATAATGCCTAAATTTGAGATTAATCTGCTT-TTGGAGCTGATTCAGAGGT 888 Query 925 GTAAAGTCACGGTGGCTATGGTCGTGCCACCGATCGTTTTAGCTATCGCGAAGTCGCCGG 984 ||||||| ||||||||| | | || || ||||| || || || || ||||||||||||| Sbjct 889 GTAAAGTGACGGTGGCTCCGATGGTTCCGCCGATTGTGTTGGCCATTGCGAAGTCGCCGG 948 Query 985 AGACGGAGAAGTATGATCTGAGCTCGGTTAG-GATGGTTAAGTCTGGAGCAGCTCCTCTT 1043 ||||||||||||||||| |||| || | || | |||| || || || || ||||||||| Sbjct 949 AGACGGAGAAGTATGATTTGAGTTCAATAAGAG-TGGTGAAATCAGGTGCTGCTCCTCTT 1007 Query 1044 GGTAAGGAGCTTGAAGATGCTATTAGTGCTAAGTTTCCTAACGCCAAGCTTGGTCAGGGC 1103 ||||| |||||||||||||| ||||||| ||||||||||| ||||| || |||||||| Sbjct 1008 GGTAAAGAGCTTGAAGATGCCGTTAGTGCCAAGTTTCCTAATGCCAAACTCGGTCAGGGA 1067 Query 1104 TATGGGATGACAGAAGCAGGTCCGGTGCTAGCAATGTCGTTAGGGTTTGCTAAAGAGCCG 1163 || || ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 1068 TACGGAATGACAGAAGCAGGTCCAGTGCTAGCAATGTCGTTAGGTTTTGCAAAAGAGCCG 1127 Query 1164 TTTCCAGTGAAGTCAGGAGCATGTGGTACGGTGGTGAGGAACGCCGAGATGAAGATACTT 1223 || || ||||| |||||||| |||||||||||||| || |||||||||||||| ||| || Sbjct 1128 TTCCCGGTGAAATCAGGAGCTTGTGGTACGGTGGTAAGAAACGCCGAGATGAAAATAGTT 1187 Query 1224 GATCCAGACACAGGAGATTCT-TTGCCTAGGAA-CAAACCCGGCGAAATATGCATCCGTG 1281 ||||||||||| ||||||||| || | ||||| || ||||| || ||||||||||||| Sbjct 1188 GATCCAGACACCGGAGATTCTCTTTCG-AGGAATCAG-CCCGGTGAGATATGCATCCGTG 1245 Query 1282 G-CAACCAAATCATGAAAGGCTATCTCAATGACCCCTTGGCCACGGCATCGACGATCGAT 1340 | || ||||||||||||||| || ||||| | || || || ||| ||| || ||| Sbjct 1246 GTCA-CCAAATCATGAAAGGTTACCTCAACAATCCGGCAGCTACAGCAGAGACCATTGAT 1304 Query 1341 AAAGATGGTTGGCTTCACACTGGAGACGTCGGATTTATCGATGATGACGACGAGCTTTTC 1400 |||||||||||||||||||||||||| | ||||| |||||||| || |||||||||||| Sbjct 1305 AAAGATGGTTGGCTTCACACTGGAGATATTGGATTGATCGATGACGATGACGAGCTTTTC 1364 Query 1401 ATTGTGGATAGATTGAAAGAACTCATCAAGTACAAAGGATTTCAAGTGGCTCCAGCTGAG 1460 || || ||| ||||||||||||| |||||||| ||||| ||||| || |||||||||||| Sbjct 1365 ATCGTTGATCGATTGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCAGCTGAG 1424 Query 1461 CTAGAGTCTCTCCTCATAGGTCATCCAGAAATCAATGATGTTGCTGTCGTCGCCATGAAG 1520 |||||| || | ||||| |||||||| || || | |||||||||||| ||||| ||||| Sbjct 1425 CTAGAGGCTTTGCTCATCGGTCATCCCGACATTACTGATGTTGCTGTTGTCGCAATGAAA 1484 Query 1521 GAAGAAGATGCTGGTGAGGTTCCTGTTGCGTTTGTGGTGAGATCGAAAGATTCAAA-TAT 1579 ||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||||| | | | Sbjct 1485 GAAGAAGCTGCTGGTGAAGTTCCAGTTGCATTTGTGGTGAAATCGAAGGATTCAGAGT-T 1543 Query 1580 ATCCGAAGATGAAATCAAGCAATTCGTGTCAAAACAGGTTGTGTTTTATAAGAGAATCAA 1639 ||| |||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1544 ATCAGAAGATGATGTGAAGCAATTCGTGTCGAAACAGGTTGTGTTTTACAAGAGAATCAA 1603 Query 1640 CAAAGTGTTCTTCACTGACTCTATTCCTAAAGCTCCATCAGGGAAGATATTGAGGAAGGA 1699 ||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| || Sbjct 1604 CAAAGTGTTTTTCACTGAATCCATTCCTAAAGCTCCATCAGGGAAGATTTTGAGGAAAGA 1663 Query 1700 TCTAAGAGCAAGACTAGCAAATGG 1723 ||| || |||| |||||||||||| Sbjct 1664 TCTGAGGGCAAAACTAGCAAATGG 1687 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73818894810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5