BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21350.2 Length=1090 Score E Sequences producing significant alignments: (Bits) Value Ahg479655 jgi|Araly1|479655|fgenesh2_kg.3__2356__AT3G21350.1 828 0.0 > Ahg479655 jgi|Araly1|479655|fgenesh2_kg.3__2356__AT3G21350.1 Length=944 Score = 828 bits (448), Expect = 0.0 Identities = 512/543 (94%), Gaps = 4/543 (1%) Strand=Plus/Plus Query 3 GCTCTTCTCCTTCACGGCGAAGTGA--CTCA--CTTCCATGGATTCCTCTCTGCTCTCGG 58 ||||||||||||| |||||||| || | || |||||||||| |||||||| ||||||| Sbjct 1 GCTCTTCTCCTTCCCGGCGAAGCGAGTCACACTCTTCCATGGACTCCTCTCTACTCTCGG 60 Query 59 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAAATTCCTCCTCCGTTACAGC 118 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | Sbjct 61 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAGATTCCTCCTCCGTCGCAAC 120 Query 119 CTCCGGGAACGGATATGACTGGAATTTCCTTCAGGGATCAGCTCTGGATCAATTCATACC 178 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 121 CTCCGGGTACGGATATGACTGGAATATCCTTCAGGGATCAGCTCTGGATCAATTCATATC 180 Query 179 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCTTTCTACGATACAACTT 238 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 181 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCCTTCTACGATACAACCT 240 Query 239 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 300 Query 299 AGATGACAGGTCTAGAATATATGTTAACTGATGCTACTGAACCAAACCTGTTCGTCTTTC 358 |||||||||| || || |||||| ||||||||||||||||||| |||||||||||||| | Sbjct 301 AGATGACAGGACTTGAGTATATGCTAACTGATGCTACTGAACCTAACCTGTTCGTCTTCC 360 Query 359 GTAAGCAAAAGAGAGATGGTCCTGAGAAAGTCACACCGATGCTAACATATTATATCTTGG 418 ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 361 GTAAGCAGAAGAGAGATGGTCCTGAGAAAGTCACACCCATGCTAACTTATTATATCTTGG 420 Query 419 ATGGTTCTATTTACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGAGTTAGTCGGA 478 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 ATGGTTCTATATACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGTGTTAGTCGGA 480 Query 479 CTATTTATAATATATCCAAGGCTTTCACTGATGCTGCATCGAAATTGGAGACCATTAGAC 538 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 481 CTATTTATAATATATCCAAGGCTTTCTCTGTTGCTGCATCGAAATTGGAGACCATTAGAC 540 Query 539 AAG 541 ||| Sbjct 541 AAG 543 Score = 604 bits (327), Expect = 3e-172 Identities = 379/404 (94%), Gaps = 4/404 (1%) Strand=Plus/Plus Query 665 TTGATACTGAAAACCAGAACGAA-CCTGCTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 723 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 544 TTGATACTGAAAACCAGAACGAACCCT-CTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 602 Query 724 CTAAAGGAAATGAAGCGAGTCGATGTCATTCTTACCTCATTATATCGCAAGTTAGCGCCA 783 ||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| ||| Sbjct 603 CTAAAAGAAATGAAGCGAGTTGATGTCATTCTTACCTCGTTGTACCGCAAGTTAGCCCCA 662 Query 784 CCACCTCCACCCCCACCCTTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 843 ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 663 GCACCTCCACCCCCTCCATTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 722 Query 844 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAGTTGATCCAATTATCGAT 903 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 723 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAATTGATCCTATTATCGAT 782 Query 904 CAAGGTCCTGCTAAAAGAATGAAGTTCTAAGCTCATCAAAATTGTTTCTTCATCTATGCA 963 ||||||||||||||||||||||| || ||||||||| || ||||||| | |||||||||| Sbjct 783 CAAGGTCCTGCTAAAAGAATGAAATTATAAGCTCATTAAGATTGTTT-T-CATCTATGCA 840 Query 964 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCGCATTGTTTAATCTGA 1023 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct 841 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCTCATCGTTTAATATGA 900 Query 1024 ACTCCTTACACAATTGTTGACATGATTACTTCTCATAAAGTTTC 1067 |||| |||||||||||||||| ||||||||||||||||| |||| Sbjct 901 ACTCGTTACACAATTGTTGACCTGATTACTTCTCATAAATTTTC 944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40600906605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5