BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21390.1 Length=1357 Score E Sequences producing significant alignments: (Bits) Value Ahg342288 jgi|Araly1|342288|fgenesh1_pg.C_scaffold_3002051 1266 0.0 > Ahg342288 jgi|Araly1|342288|fgenesh1_pg.C_scaffold_3002051 Length=930 Score = 1266 bits (685), Expect = 0.0 Identities = 739/766 (96%), Gaps = 0/766 (0%) Strand=Plus/Plus Query 473 GGGTTTCTGGCGTGGAAATGTTCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 532 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 165 GGGTTTTTGGCGTGGAAATGTCCCAGCTTTACTTATGGTTGTGCCTTATACATCCATACA 224 Query 533 ATTTGCAGTCTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 592 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ATTTGCAGTTTTACATAAGGTGAAGTCTTTTGCCGCTGGTTCATCAAAGGCCGAAAATCA 284 Query 593 TGCTCAACTGAGCCCTTATCTTTCTTACATCAGTGGGGCACTAGCAGGGTGTGCAGCAAC 652 |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 285 TGCTCAACTGAGCCCTTATCTTTCATACATTAGCGGGGCACTAGCAGGGTGTGCAGCAAC 344 Query 653 AGTTGGATCGTATCCGTTTGACCTATTGCGGACTGTATTGGCGTCCCAGGGTGAGCCAAA 712 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 345 AGTTGGATCGTATCCATTTGACCTATTGCGGACTGTATTAGCTTCCCAGGGTGAGCCAAA 404 Query 713 GGTGTATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 772 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 GGTATATCCAAATATGAGGTCAGCATTTCTGAGTATAGTGCAAACTCGTGGAATCAAAGG 464 Query 773 GTTGTATGCAGGATTGTCCCCTACTCTGATCGAGATCATTCCTTATGCTGGTCTGCAGTT 832 ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| Sbjct 465 GTTGTATGCAGGATTGTCCCCAACTTTGATCGAGATAATTCCTTATGCTGGTCTGCAGTT 524 Query 833 TGGCACCTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCTTC 892 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 525 CGGCACTTATGACACATTTAAACGCTGGAGTATGGTATATAATAAGCGATACCGATCATC 584 Query 893 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTTTTCCTTTGCGG 952 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 585 TTCATCAAGCTCAACGAATCCAAGTGATAGTCTTTCTAGCTTTCAGCTCTTCCTTTCCGG 644 Query 953 TTTAGCTTCGGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 1012 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TTTAGCTTCTGGCACTGTTTCTAAACTAGTCTGTCATCCGCTTGATGTTGTCAAGAAAAG 704 Query 1013 ATTCCAGGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTGAATGC 1072 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 705 ATTCCAAGTCGAAGGTCTGCAACGTCACCCAAAATATGGAGCCCGAGTAGAGCTAAATGC 764 Query 1073 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCTGAAGGTTGGCACGGGCT 1132 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 765 TTACAAGAACATGTTTGACGGTTTAGGGCAGATATTAAGATCAGAAGGTTGGCACGGCCT 824 Query 1133 TTATAAAGGCATTGTTCCATCAACCATTAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 1192 || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 825 CTACAAAGGCATTGTTCCATCAACCATCAAAGCTGCACCTGCTGGTGCTGTAACATTTGT 884 Query 1193 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACCTGA 1238 |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 885 GGCCTATGAACTTGCATCCGATTGGTTTGAGGCAAATTTGACATGA 930 Score = 239 bits (129), Expect = 5e-62 Identities = 147/156 (94%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 208 GTTATAGCAAGGAGCTCGTGATCATGAGTGGTACAGAGTTAGATGAGCCTGGAAAGTTAA 267 |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| Sbjct 11 GTTATAGCAAGGAGCTGGTGATCATGAGTGGTACAGAGTTAGAAGAGCCTGGACAGTTAA 70 Query 268 AACGTGCTGTCATTGATGCTTCTGCTGGTGGTGTTGCTGGTGCGATTTCACGTATGGTTA 327 |||||||||| || |||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct 71 AACGTGCTGTGATAGATGCTTCAGCTGGTGCTGTTGCTGGTGCCATTTCACGTATGGTTA 130 Query 328 CCTCTCCCCTTGATGTTATCAAGATTAGATTTCAGG 363 ||||||| |||||||||||||||||||||||||||| Sbjct 131 CCTCTCCTCTTGATGTTATCAAGATTAGATTTCAGG 166 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50779725444 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5