BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21560.1 Length=1772 Score E Sequences producing significant alignments: (Bits) Value Ahg479675 jgi|Araly1|479675|fgenesh2_kg.3__2376__AT3G21560.1 2551 0.0 > Ahg479675 jgi|Araly1|479675|fgenesh2_kg.3__2376__AT3G21560.1 Length=1720 Score = 2551 bits (1381), Expect = 0.0 Identities = 1613/1724 (94%), Gaps = 20/1724 (1%) Strand=Plus/Plus Query 31 caaaacaaaaacagagcacacaaaaagagaaaccaagttttctt-aaaaaTGGAGCTAGA 89 |||||||||||||||||| |||||||||||||||||||||| || || |||||| ||||| Sbjct 1 CAAAACAAAAACAGAGCATACAAAAAGAGAAACCAAGTTTT-TTGAAGAATGGAACTAGA 59 Query 90 A-----T-CT--TCT-CCTCCTCTACCTCCTCATGTGATGCTCGTATCTTTTCCAGGGCA 140 | | || ||| |||||||||||||||||||||||||| ||||| || |||||||| Sbjct 60 ATCTTCTCCTCCTCTACCTCCTCTACCTCCTCATGTGATGCTTGTATCATTCCCAGGGCA 119 Query 141 AGGCCACGTTAATCCACTTCTTCGTCTTGGTAAGCTCTTAGCTTCAAAGGGTTTGCTCAT 200 ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 120 AGGCCACGTTAATCCACTTCTTCGTCTCGGCAAGCTCTTAGCTTCAAAGGGTTTACTCAT 179 Query 201 AACCTTCGTCACCACTGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 260 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 AACCTTCGTCACCACAGAGTCATGGGGCAAAAAGATGCGAATCTCCAACAAAATCCAAGA 239 Query 261 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTATGATTTCTTCGACGACGGGCT 320 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 240 CCGTGTCCTCAAACCGGTTGGTAAAGGCTATCTCCGGTACGATTTTTTCGACGACGGGCT 299 Query 321 TCCTGAAGACGACGAAGCTAGCAGAACCAACTTAACCATCCTCCGACCACATCTAGAGCT 380 |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| Sbjct 300 TCCTGAAGACGACGAAGCTAGCAGAACCGACTTAACCATCCTCCGACCACAACTCGAGCT 359 Query 381 GGTCGGCAAAAGAGAGATCAAGAACCTTGTGAAACGTTACAAGGAAGTAACGAAACAGCC 440 |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 360 GGTCGGTAAAAGAGAGATCAAGAACCTTGTGAAACGTTACGCGGAAGTGACGAAACAGCC 419 Query 441 CGTGACATGTCTTATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCAGAAGATCT 500 || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 AGTAACATGTCTCATCAACAACCCTTTCGTCTCTTGGGTCTGTGACGTGGCTGAAGATCT 479 Query 501 TCAAATCCCTTGTGCTGTTCTTTGGGTTCAATCTTGTGCCTGCTTAGCTGCTTATTACTA 560 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 480 TCAAATCCCTTGTGCTGTTCTCTGGGTTCAGTCTTGTGCCTGCTTAGCTGCTTATTACTA 539 Query 561 TTACCACCACAACCTAGTTGACTTCCCGACCAAAACAGAACCCGAGATCGATGTCCAAAT 620 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 540 TTACCACCACAACCTAGTTGACTTCCCGAGCAAAACAGAACCCGAGATCGATGTCCAAAT 599 Query 621 CTCTGGCATGCCTCTCTTGAAACATGACGAGATCCCTTCTTTCATTCACCCTTCAAGTCC 680 | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 600 CCCTGGCATGCCTCTCTTGAAACCCGACGAGACCCCTTCTTTCATTCACCCTTCAAGTCC 659 Query 681 TCACTCCGCTTTGCGAGAAGTGATCATAGATCAGATTAAACGGCTTCACAAGACTTTCTC 740 | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 660 TTATTCCGCTTTGCGAGAAGTGATCATAGATCAGATCAAACGGCTTCACAAGACTTTCTC 719 Query 741 CATTTTCATCGACACTTTCAACTCATTGGAGAAAGACATCATTGACCACATGTCGACGCT 800 ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || || Sbjct 720 TATTTTCATCGACACTTTCAACTCCTTGGAGAAAGAAATCATCGACCACATGTCAACTCT 779 Query 801 CTCTCTCCCCGGTGTTATCAGACCGCTAGGACCACTCTACAAAATGGCTAAAACCGTAGC 860 |||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 780 CTCTCTCCCCGGCGTTATCAGACCGCTCGGACCGCTTTACAAAATGGCTAAAACCGTAGC 839 Query 861 TTATGATGTCGTTAAAGTAAACATCTCTGAGCCAACGGATCCTTGCATGGAGTGGTTAGA 920 |||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 840 TTATGATGACGGCAAAGGAAACATCTCTGAGCCAACGGATCCTTGCATGGAATGGTTAGA 899 Query 921 CTCGCAGCCAGTTTCCTCCGTTGTTTACATCTCATTCGGGACCGTTGCTTACTTGAAACA 980 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 900 CTCGCAGCCTGTTTCCTCCGTTGTATACATCTCATTCGGGACCGTTGCTTACTTGAAACA 959 Query 981 AGAACAAATAGACGAGATCGCTTACGGTGTGTTAAACGCCGACGTTACGTTCTTGTGGGT 1040 |||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 960 AGAACAGATAGATGAGATCGCGTACGGTGTGTTAAACGCGGACGTTACGTTCTTATGGGT 1019 Query 1041 GATTAGACAACAAGAGTTAGGTTTCAACAAAGAGA-AACATGTTTTGCCGGAAGAAGTTA 1099 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | Sbjct 1020 GATTAGACAACAAGAGTTAGGTTTCAACAAAGA-ACGACATGTTTTGCCGGAAGAAGTAA 1078 Query 1100 AAGGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTATTATCTCATCCTTCAG 1159 || |||||||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 1079 AATGGAAAGGGAAGATCGTTGAATGGTGTTCACAAGAGAAAGTTTTGTCTCATCCTTCGG 1138 Query 1160 TGGCATGTTTCGTGACTCACTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1219 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TGGCATGTTTCGTGACTCATTGTGGATGGAACTCAACGATGGAAGCTGTGTCTTCCGGAG 1198 Query 1220 TCCCGACGGTTTGTTTTCCTCAATGGGGAGATCAAGTCACGGACGCCGTTTACATGATCG 1279 |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1199 TCCCGACGGTTTGTTTCCCTCAGTGGGGAGATCAAGTCACGGACGCAGTTTACATGATCG 1258 Query 1280 ATGTTTGGAAGACGGGAGTGAGGCTAAGCCGTggagaggcggaggagaggttagtgccga 1339 ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| Sbjct 1259 ATGTTTGGAAGACGGGAGTGAGGCTTGGCCGTGGAGAGGCGGATGAGAGGTTGGTGCCGA 1318 Query 1340 gggaggaagttgcggagaggttgagagaggttactaaaggagagaAAGCGATCGAGTTGA 1399 |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||| Sbjct 1319 GGGAGGAAGTGGCGGAGAGGCTGAGAGAGGTTACTAAAGGAGAGAAAGCAATCGAGCTGA 1378 Query 1400 AAAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGTTCGT 1459 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1379 AGAAGAATGCTTTGAAGTGGAAGGAAGAGGCGGAGGCGGCGGTTGCTCGCGGTGGATCGT 1438 Query 1460 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 CGGATAGGAATCTTGAAAAGTTTGTGGAGAAGTTGGGTGCCAAACCTGTGGGGAAAGTAC 1498 Query 1520 AAAACGGGAGTCATAATCATGTCTTGGCTGGATCAATCAAAAGCTTTTAAAAAGTCATTT 1579 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 1499 AAAACGGGAGTCATAATCATGTTTTGGCTGGATCAATCAAAAGCTTTTAAAAATTCATCA 1558 Query 1580 AAGtttttttgttttttGCCTTTGGTTTCTGCAAATTCGTAATTGTGTTTGTATCCATCC 1639 ||||||||| |||||||| ||||||||||||| ||| | ||||||||||||||| ||| | Sbjct 1559 AAGTTTTTTGGTTTTTTGTCTTTGGTTTCTGCGAATCCTTAATTGTGTTTGTATGCATTC 1618 Query 1640 TCCCATTGTGTTCTTTGTTTTTCTGTTTACTAt-tttttttt--GGTATGGGTCTAGGGG 1696 |||||||| ||||||||||| | |||||||| | |||||||| |||||||||||||||| Sbjct 1619 TCCCATTGCGTTCTTTGTTTCTGTGTTTACTTTCTTTTTTTTTTGGTATGGGTCTAGGGG 1678 Query 1697 AGAGTCAATGA-CCTTACT-GAAGAATGTCAGTCACGCATTAAA 1738 ||||||||| | |||| || ||||||||||||||| |||||||| Sbjct 1679 AGAGTCAAT-ATCCTT-CTTGAAGAATGTCAGTCAAGCATTAAA 1720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66505567770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5