BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21630.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value Ahg479684 jgi|Araly1|479684|fgenesh2_kg.3__2385__AT3G21630.1 2782 0.0 > Ahg479684 jgi|Araly1|479684|fgenesh2_kg.3__2385__AT3G21630.1 Length=1949 Score = 2782 bits (1506), Expect = 0.0 Identities = 1769/1893 (93%), Gaps = 29/1893 (2%) Strand=Plus/Plus Query 52 ATGAAGCTAAAGATTTCTCTAATCGCTCCG---Attcttcttctcttctca--------t 100 |||||||| || | |||||||||||||||| ||||||||||||||||| | Sbjct 1 ATGAAGCT-AA-A-TTCTCTAATCGCTCCGCTTCTTCTTCTTCTCTTCTCATCGTCGTTT 57 Query 101 -tcttcttcGCCGTGGAATCTAAGTGCAGG-ACTAGCTGTC-CTTTAGCTCTAGCTTCGT 157 ||||||||||||| ||||||||||||||| || ||||| | ||||||||||||||| | Sbjct 58 CTCTTCTTCGCCGTCGAATCTAAGTGCAGGAAC-AGCTG-CGATTTAGCTCTAGCTTCTT 115 Query 158 ACTATC-TCGAGAACGGAACAACACTCTCCGTCATCAACCAAAACCTCAATTCTTCAATC 216 |||| | ||| ||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 116 ACTA-CGTCGCTAACGGAACAACTCTCTCCGCCATCAACCAAAACCTCAATTCTTCAATC 174 Query 217 GCGCCTTACGATCAAATCAATTTCGATCCAATCCTCAGGTACAA-CAGTAACATTAAAGA 275 ||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||| ||| Sbjct 175 GCGCCTTACGATCAAGTCAATTTCGATCCAATCCTTAGGTACAACCCG-AACATTAGAGA 233 Query 276 CAAAGATAGAATCCAGATGGGCTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAACC 335 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 234 CAAAGATAGAATCCAGATGGGTTCTAGGGTTCTTGTACCTTTCCCTTGCGAATGTCAGCC 293 Query 336 TGGTGATTTCCTAGGGCACAATTTCAGCTACAGTGTTCGACAGGAAGATACTTACGAAAG 395 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 294 TGGTGATTTTCTAGGGCACAATTTCAGCTACAGTGTTCGACAAGAAGATACTTATGAAAG 353 Query 396 AGTCGCGATTAGTAATTACGCGAATCTCACGACGATGGAGTCGTTACAGGCGAGGAATCC 455 ||| ||||| || |||||||||||| | |||||| |||| || || |||||||||||||| Sbjct 354 AGTGGCGATCAGGAATTACGCGAATTTAACGACGGTGGAATCCTTGCAGGCGAGGAATCC 413 Query 456 TTTTCCGGCGACTAACATACCTCTCTCTGCGACGCTTAATGTATTGGTGAATTGTTCTTG 515 ||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| Sbjct 414 TTTTCCGGCGACTAATATCCCGCTCTCTGCGACGCTTAATGTGTTGGTGAATTGTTCTTG 473 Query 516 TGGTGATGAGAGTGTTTCGAAAGATTTTGGTTTGTTTGTTACGTATCCGCTTCGTCCTGA 575 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 474 TGGTGATGAGAGTGTTTCTAAGGATTTTGGTTTGTTTGTTACTTATCCGCTTCGTCCTGA 533 Query 576 AGACAGTCTCAGTTCTATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGATA 635 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 534 GGATAGTCTCAGTTCGATTGCGAGATCTTCCGGTGTATCGGCGGATATTCTGCAGAGGTA 593 Query 636 TAATCCCGGTGTTAATTTTAACTCCGGGAATGGAATCGTTTATGTGCCTGGAAGAGATCC 695 |||||| | ||||||||||||||| |||||||||||||||||||| || |||| |||||| Sbjct 594 TAATCCTGATGTTAATTTTAACTCAGGGAATGGAATCGTTTATGTCCCGGGAAAAGATCC 653 Query 696 AAATGGTGCATTTCCACCATTCAAATCAAGTAAACAAGATGGTGTTGGTGCTGGAGTTAT 755 || ||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||| Sbjct 654 AAGTGGTGCATTTCCAGCTTTCAAATCAAGTAAACAAGGTGGTATTGGTGCTGGAGTTAT 713 Query 756 TGCTGGTATAGTTATAGGAGTGATTGTGGCTTTGTTGTTGATCTTGTTTATCGTATATTA 815 ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 714 TGCTGGTATAGTTGTAGGAGTGATTGTGGCTTTGTTGTTAATCTTGTTTATCATATATTA 773 Query 816 TGCTTACCGGAAGAATAAGTCGAAGGGTGATTCGTTTTCTTCTTCTATTCCGTTGTCTAC 875 |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 774 TGCTTACCGGAAGAGCAAGTCGAAGGGTGATTCGTATTCATCTTCTATTCCGTTGTCTAC 833 Query 876 TAAGGCTGATCATGCTTCTTCTACTAGTCTCCAAAGTGGAGGTTTGGGTGGTGCCGGAGT 935 ||||||||||| |||||||||||| || |||||||||||||| ||||||||| ||||||| Sbjct 834 TAAGGCTGATCTTGCTTCTTCTACCAGCCTCCAAAGTGGAGGCTTGGGTGGTACCGGAGT 893 Query 936 GTCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTTCGTTGGAGGAACT 995 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 894 ATCTCCTGGCATTGCTGCCATAAGCGTGGACAAATCTGTTGAGTTTACGTTGGAGGAGCT 953 Query 996 AGCAAAGGCTACTGATAATTTCAATTTGTCTTTTAAGATTGGGCAAGGTGGTTTTGGGGC 1055 |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 954 CGCAAAGGCTACTGATAATTTCAATCTGTCTTTTAAGATTGGTCAAGGTGGTTTTGGGGC 1013 Query 1056 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATTAAGAAGATGGACATGGAGGC 1115 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1014 TGTTTACTATGCAGAGCTGAGAGGAGAAAAAGCTGCGATCAAGAAGATGGACATGGAGGC 1073 Query 1116 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 ATCGAAACAGTTCTTGGCGGAACTAAAAGTCTTAACGCGTGTACATCATGTCAACCTGGT 1133 Query 1176 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 TCGCCTGATTGGATATTGTGTTGAGGGATCACTTTTCTTGGTGTATGAATATGTTGAGAA 1193 Query 1236 TGGTAACCTTGGACAACATTTACATGGGTCAGGACGAGAACCATTACCGTGGACTAAGAG 1295 ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1194 TGGCAACCTTGGACAACATTTACATGGGTCAGGACAAGAACCACTACCGTGGACTAAGAG 1253 Query 1296 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 AGTGCAGATTGCACTAGACTCAGCTAGAGGTTTAGAATATATCCACGAGCACACGGTTCC 1313 Query 1356 AGTTTATGTCCATAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAAATTCCGAGC 1415 || |||||||| |||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1314 TGTCTATGTCCACAGGGACATTAAATCTGCCAATATTTTGATAGACCAGAATTTTCGAGC 1373 Query 1416 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGTTCAGCAACTCGGGG 1475 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1374 AAAGGTAGCAGATTTCGGGTTAACAAAACTGACAGAAGTTGGAGGCTCAGCAACTCGTGG 1433 Query 1476 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTGTCTGCAAA 1535 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1434 TGCAATGGGTACATTTGGTTACATGGCACCAGAGACTGTTTATGGAGAAGTATCTGCAAA 1493 Query 1536 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGTGCGGT 1595 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1494 AGTAGATGTATATGCATTTGGAGTTGTCCTTTACGAATTGATTTCTGCGAAAGGCGCGGT 1553 Query 1596 TGTCAAAATGACAGAAGCCGTTGGTGAATTTAGAGGCCTTGTTGGTGTGTTCGAAGAATC 1655 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1554 TGTCAAAATGACGGAAGCCGTTGGTGAATTTAGAGGCCTCGTTGGTGTGTTCGAAGAAGC 1613 Query 1656 ATTCAAGGAAACCGACAAAGAAGAAGCACTACGCAAGATTATAGACCCGAGGCTCGGTGA 1715 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 1614 ATTCAAGGAGACCGACAAAGAAGAAGCACTACGTAAGATTATAGACCCGAGGCTTGGGGA 1673 Query 1716 TAGTTACCCGTTTGATTCGGTATACAAGATGGCGGAATTAGGGAAAGCATGTACACAAGA 1775 ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1674 TAGCTACCCGTTTGATTCGGTATATAAGATGGCGGAATTAGGGAAAGCTTGTACACAAGA 1733 Query 1776 GAATGCGCAGCTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCTCTTT-T 1834 |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1734 GAATGCTCAACTACGTCCGAGTATGAGATACATTGTGGTTGCTTTATCCACTCT-TTTCT 1792 Query 1835 CGTCTACCGGAAATTGGGATGTTGGAAACTTCCAAAACGAAGATTTAGTCAGTCTTATGT 1894 |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 1793 CGTCAACCGGAAATTGGGATGTTGCAAACTTCCAAAACGATGATTTAGTCAGTCTTATGT 1852 Query 1895 CCGGCCGGTAGACTCGTTTTCCGGTTTGCTGTT 1927 | |||||||||| |||| ||||||||||||| Sbjct 1853 CTGGCCGGTAGA---GTTT-CCGGTTTGCTGTT 1881 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77589829065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5