BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21670.1 Length=2155 Score E Sequences producing significant alignments: (Bits) Value Ahg930129 jgi|Araly1|930129|scaffold_302586.1 2870 0.0 > Ahg930129 jgi|Araly1|930129|scaffold_302586.1 Length=1815 Score = 2870 bits (1554), Expect = 0.0 Identities = 1733/1820 (95%), Gaps = 10/1820 (1%) Strand=Plus/Plus Query 177 TCTAACTGCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCCAAAGATGGC 236 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 TCTAACTTCTCAAATAAGAAAATGGTTCATGTGTCATCATCTCATGGAGCAAAAGATGGC 60 Query 237 TCTGAAGAAGCCTAT-GATTACAGAGGAAACCCACCAGATAAGTCTAAAACCGGTGGATG 295 || ||||||| || | |||||| ||||||| ||||| ||||||||||||||||||||||| Sbjct 61 TCAGAAGAAG-CTTTCGATTACCGAGGAAATCCACCGGATAAGTCTAAAACCGGTGGATG 119 Query 296 GTTAGGCGCCGGTTTAATTTTAGGGAGCGAGCTATCAGAGAGAATATGCGTGATGGGCAT 355 |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 120 GTTAGGCGCCGGTTTAATCTTAGGGAGTGAGCTATCGGAGAGAATATGCGTGATGGGCAT 179 Query 356 ATCAATGAATCTAGTGACGTACCTTGTTGGAGATTTACACATCTCATCAGCTAAATCAGC 415 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 180 ATCAATGAATCTAGTGACTTACCTTGTCGGAGATTTACACATCTCATCAGCTAAATCAGC 239 Query 416 GACCATAGTCACCAACTTCATGGGAACTCTTAACCTTC-TAGGGCTTCTCGGTGGTTTTT 474 ||| ||||||||||||||||||||||||||||||| || |||| ||||| |||||||| | Sbjct 240 GACTATAGTCACCAACTTCATGGGAACTCTTAACC-TCTTAGGACTTCTTGGTGGTTTCT 298 Query 475 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTCACAGCTC 534 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 299 TGGCTGACGCTAAACTCGGTCGCTACAAGATGGTTGCAATCTCAGCTTCTGTTACAGCTC 358 Query 535 TGGGAGTGTTGCTTTTGACGGTGGCTACAACTATCTCAAGCATGAGACCACCAATATGTG 594 |||||||||| |||||||||||||||||||| ||||| || |||||||||||| ||||| Sbjct 359 TGGGAGTGTTACTTTTGACGGTGGCTACAACCATCTCGAGTATGAGACCACCACCATGTG 418 Query 595 ACGATTTCAGGAGACTTCATCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 654 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATGATTTCAGGAGACTTCACCATCAGTGCATAGAAGCAAACGGACACCAGTTGGCTCTTC 478 Query 655 TCTATGTTGCTCTCTATACCATAGCTCTAGGCGGAGGAGGAATCAAATCCAACGTCTCTG 714 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 479 TCTATGTTGCTCTCTATACCATAGCTCTAGGTGGAGGAGGAATCAAATCCAACGTCTCGG 538 Query 715 GTTTTGGGTCTGACCAGTTCGATACTAGTGATCCTAAAGAAGAGAAACAGATGATTTTCT 774 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 539 GTTTCGGGTCTGACCAGTTCGATACTAGTGATCCTAAGGAAGAGAAACAGATGATTTTCT 598 Query 775 TCTTCAACAGATTCTATTTCTCCATCAGCGTCGGCTCTCTCTTCGCCGTGATTGCTCTTG 834 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | Sbjct 599 TCTTCAACAGATTCTATTTCTCCATCAGCGTTGGCTCTCTTTTCGCCGTGATTGCTCTGG 658 Query 835 TTTACGTTCAGGACAACGTCGGGAGAGGCTGGGGTTACGGGATCTCTGCCGCGACTATGG 894 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 659 TTTACGTTCAGGATAACGTCGGGAGAGGCTGGGGTTACGGGATCTCGGCCGCGACTATGG 718 Query 895 TGGTTGCAGCCATTGTTTTACTCTGCGGAACGAAACGGTACCGTTTCAAGAAACCTAAAG 954 ||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||| Sbjct 719 TGGTTGCAGCCATTGTTTTGCTTTGTGGAACCAAACGGTACCGTTTCAAGAAACCTAAAG 778 Query 955 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GAAGCCCTTTTACAACAATATGGAGGGTTGGTTTCTTGGCTTGGAAGAAAAGAAAGGAGA 838 Query 1015 GTTACCCTGCGCATCCAAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 1074 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GTTACCCAGCGCATCCGAGTCTTTTGAACGGTTATGACAACACCACGGTTCCACACACAG 898 Query 1075 AGATGCTTAAGTGTTTAGACAAAGCCGCAATT-TCCAAGAACGAGAGCTCTCCTAGCTCG 1133 ||| ||| |||||||||||||||||||| ||| || ||||||||||| |||||||| ||| Sbjct 899 AGAGGCTAAAGTGTTTAGACAAAGCCGCGATTCTC-AAGAACGAGAGTTCTCCTAGTTCG 957 Query 1134 AAGGACTTCGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1193 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AAGGACTTAGAAGAGAAGGATCCGTGGATCGTTTCGACTGTTACACAAGTCGAAGAAGTG 1017 Query 1194 AAACTCGTGATGAAATTGGTACCGATTTGGGCAACGAACATTCTTTTCTGGACGATTTAC 1253 |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 1018 AAACTCGTGATGAAATTGGTGCCTATTTGGGCAACAAACATTCTTTTCTGGACGATTTAC 1077 Query 1254 TCCCAAATGACGACTTTCACGGTCGAACAAGCGACGTTTATGGACCGAAAACTCGGATCT 1313 || |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 1078 TCTCAAATGACGACTTTCACGGTAGAACAAGCAACGTTTATGGACCGAGAACTCGGATCT 1137 Query 1314 TTCACTGTTCCTGCAGGCTCTTACTCTGCTTTCCTCATACTCACAATTCTCCTCTTCACT 1373 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1138 TTCACTGTTCCTGCAGGCTCCTACTCTGCTTTTCTCATACTCACAATTCTCCTCTTCACT 1197 Query 1374 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TCCCTTAACGAGAGAGTCTTTGTTCCTTTAACAAGAAGGCTCACAAAAAAGCCTCAAGGA 1257 Query 1434 ATCACAAGCCTACAGAGAATCGGAGTAGGGCTAGTATTCTCAATGGCTGCAATGGCTGTA 1493 ||||| ||||| ||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 1258 ATCACCAGCCTCCAGAGAATCGGAGTAGGCCTTGTGTTCTCAATGGCTGCAATGGCCGTA 1317 Query 1494 GCCGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGATAAGAAAATAAGC 1553 || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1318 GCTGCGGTTATAGAGAACGCTAGACGCGAGGCAGCGGTTAACAACGGTACGAAAATAAGC 1377 Query 1554 GCGTTTTGGTTGGTTCCACAATATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1613 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GCGTTTTGGTTGGTTCCACAGTATTTCTTAGTCGGTGCGGGTGAGGCCTTTGCTTACGTT 1437 Query 1614 GGACAGCTTGAGTTCTTTATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1673 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 GGACAGCTTGAGTTCTTCATAAGAGAAGCACCAGAGAGGATGAAATCGATGAGCACCGGA 1497 Query 1674 TTGTTTCTAAGCACGATATCGATGGGATTCTTCGTGAGTAGCTTGCTTGTTTCGCTTGTT 1733 ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1498 TTGTTTCTAAGTACGATTTCGATGGGATTCTTCGTGAGTAGCTTGCTCGTTTCGCTTGTG 1557 Query 1734 GATAGGGTTACAGACAAAAGCTGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1793 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1558 GATAGGGTTACAGACAAAAGATGGCTTAGAAGTAACCTTAACAAAGCGAGATTGAACTAC 1617 Query 1794 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTATTGTGTTTGCC 1853 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1618 TTCTACTGGTTACTTGTTGTCTTGGGAGCATTGAACTTCTTGATTTTTCTTGTGTTTGCC 1677 Query 1854 ATGAAACATCAGTATAAAGCTGATGTGATTACTGTTGTTG-T-GACTGATGATGATTCAG 1911 ||||||||||||||||||||||||||||||| |||||| | | || |||||||||||||| Sbjct 1678 ATGAAACATCAGTATAAAGCTGATGTGATTAGTGTTGT-GATTGA-TGATGATGATTCAG 1735 Query 1912 TGGAGAAGGAAGTGACGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1971 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 TGGAGAAGGAGGTGAAGAAGAAAGAGAGCTCTGAATTTGAGCTTAAGGACATTCCTTGAA 1795 Query 1972 ACCAGATTTAGAAGAAGaaa 1991 || |||||| |||||||||| Sbjct 1796 ACAAGATTTTGAAGAAGAAA 1815 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81094131605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5