BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21690.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479690 jgi|Araly1|479690|fgenesh2_kg.3__2391__AT3G21690.1 2832 0.0
> Ahg479690 jgi|Araly1|479690|fgenesh2_kg.3__2391__AT3G21690.1
Length=1855
Score = 2832 bits (1533), Expect = 0.0
Identities = 1723/1812 (95%), Gaps = 24/1812 (1%)
Strand=Plus/Plus
Query 1 ACATCCTCAAGCGATAACACC-acaaacaaaacaacaaaccaaaaaaaaaaaaa-agaga 58
||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||
Sbjct 1 ACATCCTCAAGCGATAACACCAAC-AACAAAACAACAAACAAAAAAAAAAAAAACAGAGA 59
Query 59 gagagagagagCAAATCTCCATCATCATCATGGACTCGTCTCCAAACGACGGCGTACACC 118
||||||||||||||| | | || ||||||||||||||||| ||||||||||||| |||
Sbjct 60 GAGAGAGAGAGCAAA--T-C-TC--CATCATGGACTCGTCTCAAAACGACGGCGTATACC 113
Query 119 AACCGCTTCTCCATCCTCAACCATCTCCATCTCCGCCGGAGTCAACCAACGGCGAGCTAG 178
||||||||||||||||||||||||||||| || || |||| |||| ||||||||||||||
Sbjct 114 AACCGCTTCTCCATCCTCAACCATCTCCACCTACGACGGAATCAAGCAACGGCGAGCTAG 173
Query 179 AAACTGTCCTCTCCGACGTAGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACCATAA 238
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 174 AAACCGTCCTCTCCGACGTCGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACAATAA 233
Query 239 TCGAATCAAAGCTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCGAATCAAAACTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 293
Query 299 ACCTCATGTCCATGTCTACTCAAATCTTCTCCGGCCATCTCGGTAACCTCGAACTCGCCG 358
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 ATCTCATGTCCATGTCCACTCAAATCTTCTCCGGCCATCTCGGTAACCTAGAACTCGCCG 353
Query 359 CCGCTTCTCTTGGTAACACCGGTATTCAAGTCTTCGCTTACGGTCTCATGCTAGGCATGG 418
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 354 CCGCTTCTCTTGGTAACACCGGTATCCAAGTCTTCGCTTATGGTCTCATGCTAGGCATGG 413
Query 419 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCGTACGGTGGTAGAAAATACGAGATGCTTG 478
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 414 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCATACGGTGGTCGAAAATACGACATGCTTG 473
Query 479 GAGTTTATCTCCAAAGATCAACCGTATTACTAACACTCACCGGCCTCCTCCTTACTTTAA 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 474 GAGTTTATCTCCAAAGATCAACCGTATTACTAACTCTCACCGGCCTCCTCCTTACCTTAA 533
Query 539 TCTACGTTTTCTCCGAACCAATCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCGG 598
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 534 TCTACGTTTTCTCCGAACCATTCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCCG 593
Query 599 CCGCATCGCTCTTCGTCTACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 658
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CTGCATCGCTCTTCGTATACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 653
Query 659 CAATACAAAAATTTCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 718
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CTATCCAAAAATTCCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 713
Query 719 CTACGCTCTTTGTTCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 778
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTACACTCTTTGTCCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 773
Query 779 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATAGTCGTGGCTCAGTTTG 838
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 774 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATTGTTGTGGCTCAGTTTG 833
Query 839 TTTATATTGTGACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTTATATTGTTACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 893
Query 899 TCTCGGGTTTGTGGAGTTTCTTTAAACTCTCCGCCGCTTCTGCCGTGATGCTTTGCCTTG 958
|||||||||| |||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 894 TCTCGGGTTTATGGAGTTTCTTTAAACTCTCTGCTGCCTCCGCCGTGATGCTTTGCCTTG 953
Query 959 AGACTTGGTATTTTCAGATTCTCGTTCTTCTTGCCGGACTTCTCGAGAATCCTGAACTTG 1018
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 954 AGACTTGGTATTTTCAGATTCTCGTTCTTCTCGCCGGACTTCTCGAGAATCCTGAACTTG 1013
Query 1019 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1073
Query 1079 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1133
Query 1139 CAGCAGCTTTTTCTGTGATCATCGTTAACATTTATTCGTTAATCACTTGTGTGATCCTAG 1198
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1134 CAGCAGCGTTTTCTGTAATCATCGTTAATATTTATTCGTTAATCACTTGTGTGATCCTAG 1193
Query 1199 CCATTGTTATTTTAGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1258
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CCATTGTTATTTTGGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1253
Query 1259 TCTCGGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCCGTAACACTTGTCCTTAACGGAA 1318
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1254 TCTCCGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCTGTAACGCTTGTCCTTAACGGAA 1313
Query 1319 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAGG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1314 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAAG 1373
Query 1379 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGGGCTCTCTTTGGGTTTTACT 1438
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1374 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGAGCTCTCTTTGGGTTTTACT 1433
Query 1439 TTAACTTCGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1498
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCAACTTTGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1493
Query 1499 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1553
Query 1559 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGAT---GCAGGT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1554 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGATCATGCAAGT 1613
Query 1616 TGATGAAAGTTTGGTATCCAAGGAACCGATTAGATT--CATCGG-TAAACCGATGCAAAT 1672
|||| ||||||||||||||| |||||||||||||| |||||| ||| ||||||||||
Sbjct 1614 CGATGGAAGTTTGGTATCCAATGAACCGATTAGATTTTCATCGGCTAA-CCGATGCAAAA 1672
Query 1673 GCTCAAAGTAACATGTGAGCTGGTAAAAAAGGATATGGATCAACCTTTTAAACTTCTACA 1732
||||| | || |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1673 GCTCATATTA----GTGAGCTGGTAATAAAGGATATGGATCTACCTTTTAAACTTCTACA 1728
Query 1733 ACTCAATTTTAAGTTTTTTGTGTTCTTGTTTAAAATG-TTAGA--GGTAGGTTATGTATT 1789
|||| |||||||| ||||||||||||||||| ||| | ||| | ||||||||||||||
Sbjct 1729 ACTCGATTTTAAGCTTTTTGTGTTCTTGTTTTAAA-GATTACACAGGTAGGTTATGTATA 1787
Query 1790 TTTGTATGCCAA 1801
||||||||||||
Sbjct 1788 TTTGTATGCCAA 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5