BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21750.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930138 jgi|Araly1|930138|scaffold_302595.1 1954 0.0
> Ahg930138 jgi|Araly1|930138|scaffold_302595.1
Length=1472
Score = 1954 bits (1058), Expect = 0.0
Identities = 1330/1458 (91%), Gaps = 31/1458 (2%)
Strand=Plus/Plus
Query 204 AAACAAAAGTCGCCGTCATGAAAGTAGAACTTGTGTTCATACCATCGCCGGGCGTTGGCC 263
||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||| ||||
Sbjct 4 AAACAAAAGTCGCCGCCATGAAAATCGAACTTGTGTTCATACCTTCGCCGGGCGTGGGCC 63
Query 264 ATATCCGAGCAACAACGGCGTTAGCAAAGCTTCTCGTTGCCAGCGACAACCGCCTCTCCG 323
||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 64 ATATCCGAGCAACCACGGCGTTAGCAAAGCTTCTCGTCGACAGCGACGACCGCCTCTCCG 123
Query 324 TCACTCTCATCGTCATTCCTTCACGAGTCTCC-GACGACGCTTCTTCCTCCGTCTACACG 382
|||||||||||||||| ||||||| | ||||| || || |||||||||||| ||||||||
Sbjct 124 TCACTCTCATCGTCATCCCTTCACAATTCTCCGGA-GATGCTTCTTCCTCCCTCTACACG 182
Query 383 AACTCCGAAGACCGTCTCCGCTACATCCTCCTCCCCGCCCGAGATCAAACTACT--G-AT 439
|| |||||||||||| ||||||||||||||||||||||| |||||||| | ||| | ||
Sbjct 183 AAGTCCGAAGACCGTTTCCGCTACATCCTCCTCCCCGCCGGAGATCAATCAACTGAGCAT 242
Query 440 -C--TCGTATCTTACATCGACAGCCAG-AAACCACAAGTAAGAGCCGTCGTGTCC-AAGG 494
| |||||||||||||||||| || | ||||||||||| | ||||| ||||||| ||
Sbjct 243 ACTTTCGTATCTTACATCGACAACC-GTAAACCACAAGTGACAGCCGCCGTGTCCGAA-C 300
Query 495 TCGCTGGAGATGTTTCAACACGTTCAGACTCACGGCTAGCTGGGATTGTCGTAGACATGT 554
|||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 301 TCGCCCGAGACGTTTCAACACGTTCAGACTCGCGGCTAGCTGGGATTGTCGTGGACATGT 360
Query 555 TCTGCACGTCCATGATAGACATCGCCGATGAGTTTAACCTCTCGGCTTATATCTTCTACA 614
|||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 361 TCTGCACGTCGATGATAGACATCGCCGACGAGTTTAACTTCCCGGCTTATATCTTCTACA 420
Query 615 CGTCCAACGCTTCTTATCTCGGGCTACAGTTCCACGTTCAATCTCTTTACGACGAGAAAG 674
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 421 CGTCGAACGCTTCTTATCTCGGGCTACAGTTCCATGTTCAATCTCTTTACGATGAGAAAA 480
Query 675 AACTCGACGTAAGTGAGTTCAAA-GA-TACGGA-GATGAAGTTTGACGTTCCAACTCTGA 731
||||||||||||||||||| ||| || | | || | |||||||||||||||||||||||
Sbjct 481 AACTCGACGTAAGTGAGTT-AAAGGACT-CTGACG-TGAAGTTTGACGTTCCAACTCTGT 537
Query 732 CTCAGCCTTTTCCGGCAAAATGTTTGCCTTCAGTGATGCTAAACAAG-AAATGGTTTCCT 790
|||||||||||||||| || ||||| |||||||| |||||| || || ||||||||||||
Sbjct 538 CTCAGCCTTTTCCGGCGAACTGTTTACCTTCAGTCATGCTAGAC-AGTAAATGGTTTCCT 596
Query 791 TACGTTTTGGGTCGAGCTAGAAGTTTTAGAGCAACGAAGGGTATTTTGGTAAATTCGGTG 850
|||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 597 TACGTTGTGGGTCGAGCTAGAAGTTTTAGGGAAACGAAGGGTATTTTGGTAAATTCCGTG 656
Query 851 GCTGACATGGAACCTCAGGCGTTG-AGTTTCTTTTCCGGTGGA-AATGGGAATACAAATA 908
|| || |||||||||||||||||| || ||||||||||| || ||||||||||| ||||
Sbjct 657 GCGGAGATGGAACCTCAGGCGTTGAAG-TTCTTTTCCGG-CGAGAATGGGAATACGAATA 714
Query 909 TC-CCTCCGGTGTACGCGGTTGGGCCCATTATGGACTTAGAATCTAGCGGCGATGAAGAG 967
| || ||||| ||||||||||||||||| |||||||| ||| |||||||||| || |||
Sbjct 715 -CTCCACCGGTTTACGCGGTTGGGCCCATAATGGACTTCGAAACTAGCGGCGACGATGAG 773
Query 968 AAGAGAAAGGAGATTTTACATTGGCTAAAAGAGCAACCGACGAAATCTGTAGTGTTTCTC 1027
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct 774 AAGAGAAAGGAGATTTTACGTTGGTTAAAAGAGCAACCGACGAAATCTGTAGTGTTCCTC 833
Query 1028 TGTTTTGGGAGCATGGGAGGTTTCAGTGAGGAACAAGCAAGAGAAATAGCTGTGGCGCTC 1087
|||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 834 TGTTTTGGGAGCATGGGAGGTTTCAGTGCGGAACAATCAAGAGAAATAGCCGTGGCGCTC 893
Query 1088 GAGCGAAGCGGACACAGGTTTCTCTGGTCGCTTCGCCGCGCTTCTCCTGTTGG-AAACAA 1146
||||||||||| |||||||||||||||||||| || ||||||||| ||| ||| |||||
Sbjct 894 GAGCGAAGCGGCCACAGGTTTCTCTGGTCGCTCCGTCGCGCTTCT-CTGGTGGAAAACAT 952
Query 1147 GTCTAATCCTCCTCCCGGAGAATTCACGAACTTAGAGGAGATTCTTCCAAAAGGGTTTTT 1206
| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 GACTAATGCTCCTCCTGGAGAATTCACGAACCTAGAGGAGATTCTTCCAAAAGGGTTTTT 1012
Query 1207 AGATCGGACGGTGGAGATAGGGAAGATCATAAGCTGGGCACCACAAGTAGATGTGTTGAA 1266
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 1013 AGGTCGGACAGTGGAGATAGGGAAGATCATAAGCTGGGCACCACAAGTGGATGTGCTAAA 1072
Query 1267 TAGTCCTGCTATAGGAGCGTTCGTGACACATTGTGGATGGAACTCAATTCTCGAGAGTCT 1326
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1073 GAGTCCTGCGATAGGTGCGTTCGTGACACATTGTGGATGGAACTCGATTCTTGAGAGTCT 1132
Query 1327 TTGGTTCGGTGTTCCGATGGCGGCGTGGCCTATCTATGCTGAGCAACAGTTTAACGCGTT 1386
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1133 ATGGTTCGGTGTTCCGATGGCGGCGTGGCCTATCTATGCGGAGCAACAGTTTAACGCGTT 1192
Query 1387 TCATATGGTGGATGAGCTTGGTTTAGCGGCGGAGGTAAAGAAGGAGTACCGTAGAGATTT 1446
|||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1193 TCATATGGTGGAGGAGCTTGGTTTAGCGGCGGAGGTGAGGAAGGAGTATCGTAGAGATTT 1252
Query 1447 TCTGGTGGAGGAGCCGGAGATTGTGACGGCTGATGAGATAGAGAGAGGGATCAAGTGTGC 1506
|||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1253 TCTGGTGGGGGAGCCGGAGATTGTGACTGCTGATGAGATAGAGAGAGGAATCAAGTGTGC 1312
Query 1507 GATGGAGCAGGATA---GCAAGATGAGGAAGAGGGTGATGGAGATGAAGGATAAGCTCCA 1563
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1313 GATGGTGCAGGATAGGCGCAAGATGAGGGAGAGGGTGATGGAGATGAAGGATAAGCTCCA 1372
Query 1564 CGTGGCGTTGGTGGACGGTGGATCTTCGAACTGTGCTCTAAAGAAGTTTGTTCAAGACGT 1623
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1373 CGTGGCGTTGGTGGACGGTGGATCTTCAAACTGTGCTATAAAGAAGTTTGTTCAAGACGT 1432
Query 1624 GGTCGATAATGTTCCATA 1641
||||||||||||||||||
Sbjct 1433 GGTCGATAATGTTCCATA 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5