BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21760.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479701 jgi|Araly1|479701|fgenesh2_kg.3__2402__AT3G21760.1 2224 0.0
> Ahg479701 jgi|Araly1|479701|fgenesh2_kg.3__2402__AT3G21760.1
Length=1495
Score = 2224 bits (1204), Expect = 0.0
Identities = 1387/1477 (94%), Gaps = 6/1477 (0%)
Strand=Plus/Plus
Query 61 ATATTTTGAAAAATGAAACTGGAGCTGGTGTTCATACCATCACCTGGTGACGGACATCTC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATATTTTGAAAAATGAAAATGGAGCTGGTGTTCATACCATCACCTGGTGACGGACATCTC 81
Query 121 CGGCCATTAGTGGAGGTAGCTAAGCTTCATGTTGACCGTGACGACCATCTCTCCATCACC 180
||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 82 CGGCCATTAGTGGAGGTGGCTAAGCTTCTTGTCGACCGTGACGATCATCTCTCCATCACC 141
Query 181 ATCATCATCATCCCTCAGATGCATGGATTTAGTAGCAGTAACTCTTCTTCTTACATCGCT 240
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 142 ATCATCATCATCCCTCAGATGCATGGATTTAGTAGCGGTAACTCTTCCTCTTACATCGCT 201
Query 241 TCTCTCTCCTCTGATTCTGAAGAACGTCTTAGCTACAACGTTCTCTCCGTCCCTGATAAA 300
||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct 202 TCTCTCTCCTCTGCTTCTGTAGAACGTCTTCGCTACAACGTTCTCTCCGTAGCTGATAAA 261
Query 301 CCAGACTCCGATGACACCAAACCACATTTTTTCGACTACATTGATAACTTCAAGCCGCAG 360
|||| |||||||||| |||||||| |||| ||||||||||| ||| ||| |||||||||
Sbjct 262 CCAGCCTCCGATGACTCCAAACCAAATTTCTTCGACTACATCGATGGCTTTAAGCCGCAG 321
Query 361 GTCAAAGCCACGGTGGAAAAACTTACTGACCCGGGTCCACCAGATTCGCCGTCGCGTCTT 420
|| ||||||||||||||||||||||| ||||||| || || ||| || ||| |||| |||
Sbjct 322 GTAAAAGCCACGGTGGAAAAACTTACAGACCCGGCTCAACTAGAGTCCCCGCCGCGGCTT 381
Query 421 GCTGGATTCGTGGTGGATATGTTTTGCATGATGATGATTGATGTCGCTAATGAGTTTGGT 480
||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||
Sbjct 382 GCTGGATTCGTGGTGGATATGTTCTGCACGATGATGATTGATGTCGCCAACGAGTTTGGT 441
Query 481 GTTCCCAGTTACATGTTTTACACATCCAACGCAACGTTTCTTGGATTGCAAGTTCATGTT 540
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 442 GTTCCGAGTTACATGTTTTACACCTCCAACGCAACGTTTCTTGGATTGCAAGTTCATGTT 501
Query 541 GAATACCTTTACGACGTTAAGAACTATGACGTTAGTGACCTCAAGGACTCGGACACTACT 600
| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 502 CAGTACCTTTACGACGTTAAGAACTATGACGTTAGTGACCTGAAGGACTCGGACATTACT 561
Query 601 GAGCTGGAAGTTCCTTGTTTGACTCGTCCTTTACCGGTTAAGTGTTTCCCCTCGGTTCTA 660
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 562 GAGCTGGAAGTTCCCTGTTTGACTCGTCCTTTACCGGTTAAGTGTTTTCCCTCGGTTCTG 621
Query 661 TTAACCAAGGAGTGGTTACCGGTTATGTTTAGACAAACCAGAAGATTCCGAGAAACTAAA 720
||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 622 TTAGCCAAGGAGTGGTTACCGGTTATGTTTAGCCAAACCCGAAGATTCGGAGAAACTAAG 681
Query 721 GGTATTTTGGTAAATACATTCGCTGAGCTTGAGCCTCAAGCTATGAAGTTTTTCTCCGGC 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 GGTATTTTGGTAAATACGTTCGCTGAGCTTGAGCCTCAAGCTATGAAGTTTTTCTCCGGC 741
Query 781 GTAGATAGTCCTCTGCCTACGGTGTACACAGTTGGACCGGTTATGAATCTTAAAATCAAC 840
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 742 GTAGATAGTCCTCTTCCTACGGTGTACACAGTGGGACCGGTTATGAATCTTAAAATCAAC 801
Query 841 GGTCCAAAT-TCATCTGACGATAAGCAATCGGAGATCCTACGGTGGCTAGACGAGCAGCC 899
||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 802 GGTCC-AATATCATCTGACGATAAGCAATTGGAGATCCTGCGGTGGCTAGACGAGCAGCC 860
Query 900 ACGTAAATCCGTTGTTTTCCTCTGTTTCGGAAGCATGGGAGGTTTCCGTGAGGGCCAAGC 959
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 861 ACGTACATCCGTTGTGTTCCTCTGTTTCGGAAGCATGGGAGGTTTCCGTGAGGATCAAGC 920
Query 960 TAAAGAAATCGCAATCGCGCTTGAGCGAAGTGGTCACCGCTTTGTCTGGTCTCTTCGTCG 1019
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 921 TAAAGAAATCGCAATCGCGCTAGAGCGAAGTGGTCACCGCTTTCTCTGGTCTCTTCGTCG 980
Query 1020 TGCTCAACCAAAAGGATCGATAGGACCTCCCGAAGAATTTACGAATCTTGAGGAAATTCT 1079
|||||| ||||||||| |||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 981 TGCTCAGCCAAAAGGAACGATGGGACCTCCCGGAGAATTTACGAATCTTGAGGAGATTCT 1040
Query 1080 CCCGGAAGGATTCTTGGAACGGACGGCAGAGATAGGAAAGATTGTAGGTTGGGCTCCACA 1139
|||||| ||||| || ||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 1041 CCCGGAGGGATTTTTAGAACGGACGGCAGAGATCGGTAAGATTATCGGTTGGGCTCCACA 1100
Query 1140 AAGCGCCATTCTAGCAAATCCTGCGATCGGAGGGTTCGTGTCGCATTGTGGATGGAACTC 1199
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 1101 AAGCGCCATTCTAGCAAATCCTGCGATCGGAGGATTTGTGTCACACTGTGGATGGAACTC 1160
Query 1200 GACGCTAGAGAGTCTATGGTTCGGAGTTCCGATGGCTACGTGGCCGCTTTACGCAGAGCA 1259
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1161 GACGCTAGAGAGTCTATGGTTCGGAGTTCCGATAGCCACGTGGCCGCTTTACGCAGAGCA 1220
Query 1260 ACAAGTTAACGCGTTCGAGATGGTTGAGGAGCTAGGGCTAGCGGTGGAGGTCCGAAATAG 1319
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1221 ACAAGTTAACGCGTTCGAGATGGTTGACGAGCTAGGGCTAGCGGTGGAGATCCGAAATAG 1280
Query 1320 TTTCCGA-GGAGATTTCATGGCGGCGGA-TGATGAGTTGATGACGGCAGAGGAGATAGAG 1377
||||| | |||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1281 TTTCC-AGGGAGATTTCATGGCGGCGGACT-CGGAGTTGATGACGGCGGAGGAGATAGAG 1338
Query 1378 AGAGGGATCCGGTGTTTGATGGAGCAGGATAGTGACGTGAGGAGTAGAGTGAAGGAGATG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AGAGGGATCCGGTGTTTGATGGAGCAGGATAGTGACGTGAGGAGTAGAGTGAAGGAGATG 1398
Query 1438 AGCGAGAAGAGTCACGTAGCTTTAATGGACGGTGGATCTTCGCACGTTGCTCTTCTAAAG 1497
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 AGTGAGAAGAGTCACGTAGCTTTAATGGACGGTGGATCTTCGCACGTTGCTCTTCTAAAG 1458
Query 1498 TTTATTCAAGACGTCACTAAGAATATCTCTTGAATCT 1534
|| ||||||||||||||||||||| ||||||||||||
Sbjct 1459 TTCATTCAAGACGTCACTAAGAATCTCTCTTGAATCT 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5