BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G21860.1 Length=459 Score E Sequences producing significant alignments: (Bits) Value Ahg930150 jgi|Araly1|930150|scaffold_302607.1 455 1e-127 Ahg930151 jgi|Araly1|930151|scaffold_302608.1 418 2e-116 Ahg930149 jgi|Araly1|930149|scaffold_302606.1 252 2e-66 > Ahg930150 jgi|Araly1|930150|scaffold_302607.1 Length=507 Score = 455 bits (246), Expect = 1e-127 Identities = 395/466 (85%), Gaps = 14/466 (3%) Strand=Plus/Plus Query 1 ATGTCGACGAAGAAGATCAT-ATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGA 59 ||||||||||||| |||| | |||| |||||| |||||||| | || ||| || |||| Sbjct 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86 Query 60 AGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA- 118 ||| |||||| |||||||||||| |||| |||||||| ||| |||||||| |||||| Sbjct 87 AGATGCCGCACGCCAATGCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATAG 146 Query 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177 | | ||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||| Sbjct 147 A-GAAATCCCGCTTCCA-AACGTGACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTGC 204 Query 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237 || |||||||||||||||| ||||| |||| | ||||||||||||||||||| |||||| Sbjct 205 AAGAAGCACCACGTCGATGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAATGGGAC 264 Query 238 -AAGGAA-TTCATGGAAAAATATCAATCCACGATCTTTGATCTCATT-ATGGCTGCGAAT 294 || || |||||||||||| |||||| ||| |||||||||||||| || ||||| | | Sbjct 265 GAA--AAGTTCATGGAAAAAGATCAATTAACGCTCTTTGATCTCATTAAT-GCTGCTAGT 321 Query 295 TACCTAAACATCA-AAAGCCTTCTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAA 353 |||||| |||| | |||||||||||||||||||||||||||| | | ||||||||| ||| Sbjct 322 TACCTAGACAT-ACAAAGCCTTCTTGATCTAGCATGCCAAACTGCCTCGGATATGAGCAA 380 Query 354 AGACAACACTGTGGAGCACACTCGCAAATTCTTCAACATTGAGAATGATTATACACATGA 413 || ||| ||| |||| || |||||| |||||||||||||||||||||||| ||||| ||| Sbjct 381 AGCCAAAACTCTGGACCAGACTCGCGAATTCTTCAACATTGAGAATGATTTTACACCTGA 440 Query 414 GGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAATGA 459 ||||||| |||| |||| || ||| ||||| || |||||||||| Sbjct 441 GGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486 > Ahg930151 jgi|Araly1|930151|scaffold_302608.1 Length=499 Score = 418 bits (226), Expect = 2e-116 Identities = 386/463 (83%), Gaps = 12/463 (3%) Strand=Plus/Plus Query 1 ATGTCGACGAAGA-AGATCATA-TTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAG 58 |||||| |||||| | |||| | |||||||||||||||||| | || || ||| || ||| Sbjct 21 ATGTCGGCGAAGATA-ATCA-AGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAG 78 Query 59 AAGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA 118 ||||||| ||| |||||| |||||||||| |||| ||| ||| |||||||| ||||||| Sbjct 79 AAGAGGCTGCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATA 138 Query 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177 | | ||||||| ||||| || |||||| ||||||||||| ||||||| ||||||||| Sbjct 139 AAGAAATCCCGGTTCCA-AACGTGACAAGCAAGATTCTTTCGATGGTGGTCGAGTACTTA 197 Query 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237 || ||||||||||||| || ||||| |||| | |||||||||||||||||||||||||| Sbjct 198 AAGAAGCACCACGTCGGTGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAGTGGGAC 257 Query 238 AAGGAATTCATGGAAAAATATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATTAC 297 ||| |||||| ||| |||||||||||||||||||||||||||||||||||||| || Sbjct 258 GCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCAC 317 Query 298 CTAAACATCAAAAGCCTT-CTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAAAGA 356 |||||||||||||||||| || || ||| |||||||||| |||||||||||||||||||| Sbjct 318 CTAAACATCAAAAGCCTTACT-GACCTAACATGCCAAACTGTCGCGGATATGATCAAAGA 376 Query 357 C-AACACTGTGGAGCACACTC-GCAAATTCTTCAACATTGAGAATGATTATACACATGAG 414 || ||| | || | || || || |||||||||||||||||||| ||||| |||| Sbjct 377 GGAA-ACTCCAAAACAGA-TCCGCCAACGCTTCAACATTGAGAATGATTTTACACCTGAG 434 Query 415 GAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAAT 457 |||||| |||| |||| || | | ||||| || |||||||| Sbjct 435 GAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477 > Ahg930149 jgi|Araly1|930149|scaffold_302606.1 Length=269 Score = 252 bits (136), Expect = 2e-66 Identities = 214/251 (85%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 212 CCGACGAGGATCTCAAGAAGTGGGAC-AAGGAATTCATGGAAAAATATCAATCCACGATC 270 ||||||||||||||||||| |||||| || || ||||||||||| |||||| ||| || Sbjct 2 CCGACGAGGATCTCAAGAAATGGGACGAA--AAGTCATGGAAAAAGATCAATTAACGCTC 59 Query 271 TTTGATCTCATT-ATGGCTGCGAATTACCTAAACATCA-AAAGCCTTCTTGATCTAGCAT 328 |||||||||||| || ||||| | ||||||| |||| | ||||||||||||||||||||| Sbjct 60 TTTGATCTCATTAAT-GCTGCTAGTTACCTAGACAT-ACAAAGCCTTCTTGATCTAGCAT 117 Query 329 GCCAAACCGTCGCGGATATGATCAAAGACAACACTGTGGAGCACACTCGCAAATTCTTCA 388 ||||||| | | ||||||||| ||||| ||| ||| |||| || |||||| ||||||||| Sbjct 118 GCCAAACTGCCTCGGATATGAGCAAAGCCAAAACTCTGGACCAGACTCGCGAATTCTTCA 177 Query 389 ACATTGAGAATGATTATACACATGAGGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGG 448 ||||||||||||||| ||||| |||||||||| |||| |||| || ||| ||||| || Sbjct 178 ACATTGAGAATGATTTTACACCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGG 237 Query 449 GTTTTGAATGA 459 |||||||||| Sbjct 238 CTTTTGAATGA 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16597681215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5