BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21865.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479706 jgi|Araly1|479706|fgenesh2_kg.3__2407__AT3G21865.1 1908 0.0
> Ahg479706 jgi|Araly1|479706|fgenesh2_kg.3__2407__AT3G21865.1
Length=1282
Score = 1908 bits (1033), Expect = 0.0
Identities = 1193/1267 (94%), Gaps = 24/1267 (2%)
Strand=Plus/Plus
Query 52 CAGGGAGGAGGCTCGAGAACAGTGCCCCATATCTGAAAGCTGAAGCTAAGAATCT----G 107
|||||| | ||||||||||||||| || ||||| ||||||||||||||||||||| |
Sbjct 24 CAGGGA-G-GGCTCGAGAACAGTG-CCAATATCCGAAAGCTGAAGCTAAGAATCTGAAAG 80
Query 108 ---GA--CGTTCGTGTTTAAACCGACGACGTATTTGAAATTGGCTTTGAAGGAAAGGTGA 162
|| | |||||| ||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 81 TTCGAGTCTTTCGTGATTAAAACGACGACGTATTTGAATTTCGCTTTGAAGGAAAGGTGA 140
Query 163 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 200
Query 223 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCCACTACATCGATTCGAA 282
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 201 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCTACTTCATCGATTCGCA 260
Query 283 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATATTTACGT 342
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 261 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATTTTTACGT 320
Query 343 GGAGGGCGATAAGAACGCCCGGAGAGCAACGTCAGAGAAGGCAGCCGAAGCGTAGGATTC 402
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 321 GGAGGGCGATAAGAACGCCGGGGGAGCAACGTCAAAGAAGGCAGCCGAAGCGTAGGATTA 380
Query 403 ACAATGCTGAAACGTCTAGTGCTGCTGCTGCTGCTTCTCAGTCGAATCTAGCTTCTTCGG 462
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 381 ACAATGCTGAAACGTCTAGTGCTGCTGCTGCTGCTGCTCAGTCGAATGTAGCTTC---GG 437
Query 463 TTGCT-CCGGAAGTTTCTTCGCCTCGTGAGGATAATGCGGTGCAAGATGTTGTTGATCAG 521
| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 438 T-GCTTCCTGAAGTTTCTTCGCCTCGTGAGGATAACGCGGTGCAAGATGTTGTTGATCAG 496
Query 522 TTCTTTCAACCTGTTAAACCTACTTTGGGGCAAATAGTTAGACAGAAGCTTAGTGAAGGA 581
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 497 TTCTTTCAACCTGTTAAACCTACATTGGGGCAAATAGTTAGGCAGAAGCTTAGTGAAGGA 556
Query 582 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 616
Query 642 CAAAAACAAGCCACAGTGAGGTCATCTGTTTTGGAAGTTCTACTAGAGATTACAAAGTAT 701
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 617 CAAAAACAAGCAACAGTGAGGTCATCTGTTTTGGAAGTTCTCCTAGAGATTACAAAGTAT 676
Query 702 AGTGATTTGTATCTTATGGAAAGAGTTCTTGACGATGAAAGCGAGGCCAAAGTTTTACAG 761
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 677 AGTGATTTATATCTCATGGAAAGAGTTCTTGACGATGAAAGCGAAGCCAAAGTTCTACAG 736
Query 762 GCTTTAGAGAATGCAGGAGTTTTTACATCTGGTGGTTTAGTCAAAGATAAGGTGCTCTTT 821
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 737 GCTTTAGAGAATGCAGGAGTTTTCACATCTGGTGGTTTGGTCAAAGATAAGGTCCTCTTT 796
Query 822 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAGCTAGAACCTGACTGGCATATT 881
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 797 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAACTAGAACCTGACTGGCATATC 856
Query 882 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATATCAGCTTCATGTC 941
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 857 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATACCAGCTTCACGTC 916
Query 942 GCTACGGTGAAACCCGAGCGAACAGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 1001
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 917 GCTACGGTGAAACCCGAGCGAACGGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 976
Query 1002 TTCTTTGGAAGTGTTTAATATCAACaaaaaaaGAGAGGTGAAAGATATTACGTTGTCCTG 1061
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 977 TTCTTTGGAAGTGTTTAATGTCAACAAAAAA-GAGAGGTGAAAGATACTACGTTGTCCTG 1035
Query 1062 ACTTAAGCATCGTTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGTTTTTCATTTT 1121
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATTTAAGCATCATTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGTTTTTCATTTT 1095
Query 1122 TCTTTGATTGTGTCTAAATTAAAGTTTGATATACA-TTTGGAGTTAGATAT-T-A---CT 1175
||||| ||||||||||||||||||||||||||||| ||||||||||||||| | | ||
Sbjct 1096 TCTTTTATTGTGTCTAAATTAAAGTTTGATATACACTTTGGAGTTAGATATATTATTACT 1155
Query 1176 GCGAGTGCCTCTGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCAAAAT 1235
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1156 GCGAGTGCCAATGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCACAAG 1215
Query 1236 TCTTTAAGAAATAAACAAATGTCCGTTGTTTAGTCATTAGTTCATCGACGAAGTGTGGAT 1295
|||| ||||||||||||||||||| || ||||||||||| ||||||||| |||||||||
Sbjct 1216 TCTTAAAGAAATAAACAAATGTCCTTTATTTAGTCATTAATTCATCGACAAAGTGTGGAA 1275
Query 1296 TAGTTCT 1302
|||||||
Sbjct 1276 TAGTTCT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5