BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21870.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318925 jgi|Araly1|318925|fgenesh1_pm.C_scaffold_3001941 933 0.0
Ahg930157 jgi|Araly1|930157|scaffold_302614.1 252 3e-66
> Ahg318925 jgi|Araly1|318925|fgenesh1_pm.C_scaffold_3001941
Length=633
Score = 933 bits (505), Expect = 0.0
Identities = 589/630 (93%), Gaps = 4/630 (1%)
Strand=Plus/Plus
Query 17 ATGTTAACCGCAGCCGGAGACGATGAACTGGACCCGGTCGTGGGACCAGAATCGGCAACG 76
|||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1 ATGTTAACCGTAGCCGGAGACGATGAACTAGACCCGGTCGTGGGACCAGAGCCGCCAACG 60
Query 77 GAAGCAGCCACTCCAAGAGTGCTGACTATAATCTCCCATGTGATGGAGAAGCTCGTGGCA 136
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGCAGCCACTCCAAGAGTGTTGACTATAATCTCCCATGTGATGGAGAAGCTCGTGGCA 120
Query 137 CGAAACGAGTGGTTAGCTAAGCAAACTAAGGGATTTGGGAAGAGCTTGGAGGCGTTTCAC 196
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 121 CGAAACGAGTGGTTAGCTAAACAAACTACGGGATTCGGGAAGAGCTTGGAGGCGTTTCAC 180
Query 197 GGCGTGAGAGCGCCGAGCATAAGTATAGCTAAA-TACCTTGAGAGGATATATAAGTACAC 255
|| || ||||| || |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 181 GGTGTCAGAGCACCAAGCATAAGTATAGC-AAAGTACCTTGAGAGGATATACAAGTACAC 239
Query 256 AAAATGTAGCCCGGCATGTTTCGTTGTTGGGTATGTGTACATAGACCGGTTGGCTCATAA 315
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAATGTAGCCCGGCGTGTTTCGTTGTTGGGTATGTGTACATAGACCGGTTGGCTCATAG 299
Query 316 GCATCCTGGTTCTTTGGTTGTCTCCTTGAATGTTCATAGACTCCTCGTCACTTGTGTCAT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCATCCTGGTTCTTTGGTTGTCTCCTTGAATGTTCATAGACTCCTCGTCACTTGTGTCAT 359
Query 376 GATTGCTGCCAAGATACTAGATGACGTGCACTACAACAACGAGTTCTATGCTCGGGTTGG 435
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATTGCTTCCAAGATACTAGACGACGTGCACTACAACAACGAGTTCTATGCTCGGGTTGG 419
Query 436 AGGCGTAAGCAATGCAGACTTGAACAAAATGGAGTTGGAGCTTCTCTTTCTTCTTGACTT 495
||| || |||||||| ||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct 420 AGGTGTGAGCAATGCGGACCTGAACAAAATGGAGTTAGAGCTTCTATTTCTCCTTGACTT 479
Query 496 TAGAGTTACTGTGAGTTTTAGAGTTTTCGAGAGCTATTGCTTTCACCTCGAAAAAGAGAT 555
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 CAGAGTGACCGTGAGTTTTAGAGTTTTTGAGAGCTATTGCTTTCACCTCGAAAAAGAGAT 539
Query 556 GCAACTAAACGACGCCGTTTCTTCCCTCAAAGATATTCAACCAATGCAAGAAAGTCTCTC 615
| |||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 540 GTTACTAAACGGCGACGTTTCTTCCCTCAAAAATATTCAACCATTGCAAGAAAGTCTCTC 599
Query 616 TCCAGCATC-TACTTTATCATCTTTATATG 644
||| |||| | ||||||||||||||||||
Sbjct 600 TCCTTCATCCT-CTTTATCATCTTTATATG 628
> Ahg930157 jgi|Araly1|930157|scaffold_302614.1
Length=193
Score = 252 bits (136), Expect = 3e-66
Identities = 152/160 (95%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 5 TGAAGAGAACCCATGTTAACCGCAGCCGGAGACGATGAACTGGACCCGGTCGTGGGACCA 64
|||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 9 TGAAGATAACCCATGTTAACCGTAGCCGGAGACGATGAACTAGACCCGGTCGTGGGAGCA 68
Query 65 GAATCGGCAACGGAAGCAGCCACTCCAAGAGTGCTGACTATAATCTCCCATGTGATGGAG 124
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 69 GAGCCGCCAACGGAAGCAGCCACTCCAAGAGTGTTGACTATAATCTCCCATGTGATGGAG 128
Query 125 AAGCTCGTGGCACGAAACGAGTGGTTAGCTAAGCAAACTA 164
||||||||||||||||||||||||||||||||||||||||
Sbjct 129 AAGCTCGTGGCACGAAACGAGTGGTTAGCTAAGCAAACTA 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5