BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G21890.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479709 jgi|Araly1|479709|fgenesh2_kg.3__2410__AT3G21890.1 614 3e-175
Ahg930155 jgi|Araly1|930155|scaffold_302612.1 579 1e-164
> Ahg479709 jgi|Araly1|479709|fgenesh2_kg.3__2410__AT3G21890.1
Length=544
Score = 614 bits (332), Expect = 3e-175
Identities = 458/513 (89%), Gaps = 31/513 (6%)
Strand=Plus/Plus
Query 51 caagaaagagattgagaaaaaTGTGTAGAGGCTTGA---ATAAT---GAAGAGAGCAGAA 104
|||| || ||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 27 CAAG-AA-AGATTTAGAAAAATGTGTAGAGGCTTGATCTTTAATGAAGAAGAGAGCAGAA 84
Query 105 GAAGTGACGGAGGA-GGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGT 163
|||| |||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 85 GAAGCCACGG-TGATGGTTGCCGGAGTCTTTGCACGAGACCGAGTGTTCCGGTTAGGTGT 143
Query 164 GAGCTTTGCGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGA 223
|||||||| | ||| || ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 144 GAGCTTTGTGGCGGCGATGCCTCCGTGTTCTGTGAGGCTGACTCGGCGTTTCTCTGTAGA 203
Query 224 AAATGTGACCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTG 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AAATGTGACCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTG 263
Query 284 CTATGCACTTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCAC 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CTATGCACTTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCAC 323
Query 344 GTTGTTTTACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAA 403
|||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 324 GTTGTTTTACCGTCGGTGACGACGGTGGGAGAAGCCACCGTGGAGAGTAGAAGTGAACAA 383
Query 404 GATAATCATGAGGTTCCGTTTGTTTTTCTCTGATTATTAGAtttttttGGTGTAAGCTAT 463
||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||
Sbjct 384 GATAATCATGAGGTTCCGTTTGTATTTCTCTGATTTTTAG-TTTTTTT--T-----CTA- 434
Query 464 AAATATTCTAGGGtttttatgcaattttcttttaagaaaaatctga-aaattttaatttt 522
|||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 435 ----------GGGTTTTTATGCAATTTTCTATTAAGAAAAATCTGGGAAATTT-AATTTT 483
Query 523 atgaagcttagaattttaAGAAATGTGTAATGa 555
||||||||||||||||||| ||||| ||| |||
Sbjct 484 ATGAAGCTTAGAATTTTAAAAAATGGGTATTGA 516
> Ahg930155 jgi|Araly1|930155|scaffold_302612.1
Length=416
Score = 579 bits (313), Expect = 1e-164
Identities = 376/405 (93%), Gaps = 9/405 (2%)
Strand=Plus/Plus
Query 59 agattgagaaaaaTGTGTAGAGGCTTGA---ATAAT---GAAGAGAGCAGAAGAAGTGAC 112
||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 13 AGATTTAGAAAAATGTGTAGAGGCTTGATCTTTAATGAAGAAGAGAGCAGAAGAAGCCAC 72
Query 113 GGAGGA-GGTTGCCGGAGTCTCTGCACGAGACCGAGTGTTCCGGTAAGGTGTGAGCTTTG 171
|| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 73 GG-TGATGGTTGCCGGAGTCTTTGCACGAGACCGAGTGTTCCGGTTAGGTGTGAGCTTTG 131
Query 172 CGACGGAGACGCCTCCGTGTTCTGTGAAGCGGACTCGGCGTTCCTCTGTAGAAAATGTGA 231
| ||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 132 TGGCGGCGATGCCTCCGTGTTCTGTGAGGCTGACTCGGCGTTTCTCTGTAGAAAATGTGA 191
Query 232 CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CCGGTGGGTTCATGGAGCGAATTTTCTAGCTTGGAGACACGTAAGGCGCGTGCTATGCAC 251
Query 292 TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TTCTTGTCAGAAACTCACGCGCCGGTGCCTCGTCGGAGATCATGACTTCCACGTTGTTTT 311
Query 352 ACCGTCGGTGACGACGGTCGGAGAAACCACCGTGGAGAATAGAAGTGAACAAGATAATCA 411
|||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||
Sbjct 312 ACCGTCGGTGACGACGGTGGGAGAAGCCACCGTGGAGAGTAGAAGTGAACAAGATAATCA 371
Query 412 TGAGGTTCCGTTTGTTTTTCTCTGATTATTAGAttttttt-GGTG 455
||||||||||||||| ||||||||||| |||| ||||||| ||||
Sbjct 372 TGAGGTTCCGTTTGTGTTTCTCTGATTTTTAGTTTTTTTTTGGTG 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5