BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22060.1
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479720 jgi|Araly1|479720|fgenesh2_kg.3__2421__AT3G22060.1 1195 0.0
Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292 259 3e-68
> Ahg479720 jgi|Araly1|479720|fgenesh2_kg.3__2421__AT3G22060.1
Length=896
Score = 1195 bits (647), Expect = 0.0
Identities = 746/795 (94%), Gaps = 2/795 (0%)
Strand=Plus/Plus
Query 21 CCACAAAATATCAATTTTCTT-CCAAAACAATGTCTTCATTAAAACGCATCGTTTGGTTC 79
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 1 CCACAAAATATCAATTTT-TTCCCAAAACAATGTCTTCATCAAAACGCATCGTTTGGTTC 59
Query 80 CCTATCTTGGCCATAGCCATACAAATTCTCTCTATACATACCGTTTTGTCTCAAAGCCAG 139
||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 CCTATCTTGATCGTAGCCATACAAATTCTCTCTATACATACCGTTTTGTCCCAAAGCCAG 119
Query 140 AACAATGCGTTTCTCTTCCACAAGTGCTCAGACATCGAAGGAAGCTTTACCTCAAAAAGT 199
||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 120 AACAATGCGTTTCTCTTCCACAAGTGCTCAGACATTGAAGGAAGCTTCACTTCGAAAAGT 179
Query 200 CTCTACGAGTCAAATCTCAACAATCTCTTTAGTCAGCTCTCTTACAAAGTTCCATCCACC 259
| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CCCTACGAGTCAAATCTTAACAATCTCTTTCCTCAGCTCTCTTACAAAGTTCCATCCACC 239
Query 260 GGTTTTGCCGCCTCCTCCACTGGCAACACTCCAAACAACGTCAACGGTTTGGCCCTTTGC 319
||||||||| |||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct 240 GGTTTTGCCACCTCCTCCGCTGGTATCACTCCAGACAACGTCAACGGTTTGGCCCTTTGC 299
Query 320 CGCGGTGATGCCTCCTCCTCTGACTGCCGCTCTTGTCTTGAGACTGCCATCCCCGAGCTA 379
|||||||||||||| |||||||| ||| |||| ||||||| || |||||||| ||| ||
Sbjct 300 CGCGGTGATGCCTCTTCCTCTGATTGCAGCTCCTGTCTTGCCACCGCCATCCCTGAGATA 359
Query 380 CGTCAGAGATGTCCGAACAACAAGGCGGGAATAGTATGGTATGACAACTGTCTTGTAAAG 439
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct 360 CGTCAGAGATGTCCGAGCAACAAGGCGGGAATAATATGGTATGACAACTGTCTTGTCAAG 419
Query 440 TATTCCTCGACCAATTTCTTCGGGAAGATAGATTTCGAGAACAGGTTCTATTTGTACAAC 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 TATTCCTCGACCAATTTCTTCGGGAAGATCGATTTCGAGAACAGGTTCTATTTGTACAAC 479
Query 500 GTCAAAAATGTGAGTGATCCATCAACATTCAACTCGCAGACGAAAGCTCTTTTAACCGAG 559
||||| |||||||| |||||||| || |||||| |||||||||| |||||||||||||||
Sbjct 480 GTCAACAATGTGAGCGATCCATCGACGTTCAACACGCAGACGAAGGCTCTTTTAACCGAG 539
Query 560 CTGACAAAGAAAGCGACTACTAGAGATAACCAGAAGCTATTTGCGACAGGAGAGAAAAAT 619
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 540 CTGACAAAGAAAGCGACTACTAGAGATAACCAGAAGCTGTTTGCGACAGGAGAGAAGAAT 599
Query 620 ATCGGAAAGAATAAATTGTACGGACTAGTGCAATGTACGAGGGACTTGAAGAGTATTACT 679
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 600 ATCGGGAAGAAGAAATTGTACGGACTAGTGCAGTGTACGAGGGACTTGAAGAGTGTGGCT 659
Query 680 TGTAAGGCGTGTTTAAATGGAATTATTGGGGAGCTTCCTAACTGTTGCGACGGTAAAGAA 739
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTAAGGCATGTTTAAATGGAATTATTGGGGAGCTTCCTAACTGTTGCGACGGTAAAGAA 719
Query 740 GGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGGTATGAGATTTACCCTTTTGTTAAG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGGTATGAGATTTACCCTTTTGTTAAG 779
Query 800 ACTGCTTGATTAGAG 814
||||||||||||||
Sbjct 780 GCTGCTTGATTAGAG 794
> Ahg348900 jgi|Araly1|348900|fgenesh1_pg.C_scaffold_5002292
Length=777
Score = 259 bits (140), Expect = 3e-68
Identities = 351/448 (78%), Gaps = 33/448 (7%)
Strand=Plus/Plus
Query 374 GAGCTACGTCAG-AGATGTCCGAACAACAAGGCGGGAATAGTATGGTATGACAACTGTCT 432
||||||||| || |||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 337 GAGCTACGT-AGAAGATGTCCGATGAACAAGGCGGGAATAGTATGGTTTGACAAGTGTCT 395
Query 433 TGTAAAGTATTCCT-CGACCAATTTCTTCGGGAAGATAGATTTCGAGAACAGGTTCTATT 491
| | |||| || || | || |||||||| |||||| ||| | |||||| |||||||
Sbjct 396 TCTCAAGT-TTTCTCCAACGGCTTTCTTCGAGAAGATCGATGACAAGAACAAGTTCTATA 454
Query 492 TGTACAACGTCAAA-AATGTGAGTGATCCATCAACATTCAACT-CGCAGACGAAAGCTCT 549
|||||| | |||| || || || ||||| | | ||||| | || |||| ||||||||
Sbjct 455 TGTACAGC-ACAAAGAAAGTAAGCGATCCGGCGTCGTTCAA-TGCGAAGACAAAAGCTCT 512
Query 550 TTTAACCGAGCTGACAAAGAAAGCGACTACTAG-AGATAACCAGAAGCTA-T-TTG--C- 603
|||| |||||||| | |||| | ||||| | |||| | | ||| || | ||| |
Sbjct 513 ACTAACTGAGCTGACCACGAAA--G-CTACTCGTAGATCA-GATAAGTTATTGTTGTACG 568
Query 604 -GACAGGAGAGA-AAAATATCGGAAAGAAT-AAATTGTACGGACTAGTGCAATGTACGA- 659
||| || |||| ||| |||| ||| || || |||||||| | ||||| ||||| |
Sbjct 569 AGACGGGGGAGATGAAA-CTCGGGAAG-ATGAAGCTGTACGGAATGGTGCAGTGTAC-AC 625
Query 660 GGGACTTGAAGAGTATTAC---TTGTAAGGCGTGTTTAAATGGA-ATTATTGGGGAGCTT 715
||||| | | | || |||| ||||||| ||||||| || | |||||||||||||||
Sbjct 626 GGGACCT-ATG-GT-TTACGGTTTGTAAGACGTGTTTGGAT-AAGATTATTGGGGAGCTT 681
Query 716 CCTAACTGTTGCGACGGTAAAGAAGGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGG 775
||||| ||||| || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 682 CCTAAATGTTGTGATGGTAAAGAAGGAGGGAGAGTTGTGAGTGGGAGTTGTAACTTTAGG 741
Query 776 TATGAGATTTACCCTTTTGTTAAGACTG 803
|||||||||||||||||| || | ||||
Sbjct 742 TATGAGATTTACCCTTTTCTTGACACTG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5