BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22370.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479749 jgi|Araly1|479749|fgenesh2_kg.3__2450__AT3G22370.1 1871 0.0
Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530 767 0.0
> Ahg479749 jgi|Araly1|479749|fgenesh2_kg.3__2450__AT3G22370.1
Length=1274
Score = 1871 bits (1013), Expect = 0.0
Identities = 1145/1209 (95%), Gaps = 8/1209 (1%)
Strand=Plus/Plus
Query 89 GATTTGAAACAATGATGATAACTCGCGGTGGAGCCAAGGCGGCGAAATCGCTGTTAGTGG 148
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 41 GATTTGAAACAATGATGATGACTCGCGGTGGAGCCAAGGCGGCGAAATCGCTGTTAGCGG 100
Query 149 CGGCTGGACCACGTTTGTTCTCGACGGTCCGTACGGTTTCGTCTCACGAGGCTTTATCAG 208
||||| |||||||||||||||||||| |||||||| ||||||||||||| || |||||||
Sbjct 101 CGGCTAGACCACGTTTGTTCTCGACGATCCGTACGATTTCGTCTCACGAAGCGTTATCAG 160
Query 209 CAAGCCATATTTTGAAGCCTG-GTGTTACATCTGCTTGGATATGGACTAGAGCTCCGACG 267
|||||||| | |||||||||| | ||| |||| |||||||| ||||||||||||||||||
Sbjct 161 CAAGCCATCTCTTGAAGCCTGAG-GTTGCATCGGCTTGGATCTGGACTAGAGCTCCGACG 219
Query 268 ATTGGAGGTATGAGATTCGCTAGCACGATCACTCTGGGAGAGAAAACTCCGATGAAGGAG 327
||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct 220 ATTGGAGGTATGAGATTCGCTAGCACGATTACTTTAGGAGAGAAAACTCCGACGAAGGAA 279
Query 328 GAGGACGCGAATCAGAAGAAAACAGAGAACGAATCCACCGGTGGAGACGCCGCCGGAGGT 387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 280 GAGGACGCGAATCAGAAGAAAACAGAGAAGGAATCCACCGGTGGAGACGCCGCCGGAGGT 339
Query 388 AATAACAAGGGAGATAAAGGAATCGCGAGCTATTGGGGTGTTGAACCTAATAAGATTACT 447
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 340 AATAACAAGGGAGATAAAGGAATCGCTAGCTATTGGGGTGTTGAACCTAATAAGATTACT 399
Query 448 AAAGAAGATGGTTCTGAATGGAAGTGGAACTGTTTCAGGCCATGGGAAACGTATAAAGCT 507
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 400 AAAGAAGATGGTTCTGAATGGAAGTGGAATTGTTTCAGGCCATGGGAGACTTATAAAGCT 459
Query 508 GATATAACGATAGATCTGAAGAAGCATCATGTTCCAACGACGTTTCTTGATAGAATAGCT 567
||| | || |||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 460 GATTTGACTATAGATCTGAAGAAACATCATGTTCCTACGACGTTTCTTGATAGATTAGCT 519
Query 568 TATTGGACTGTTAAATCTCTTCGTTGGCCTACCGATTTGTTCTTCCAGAGGAGATATGGA 627
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 520 TATTGGACTGTTAAATCTCTTCGTTGGCCTACTGATTTGTTCTTCCAGAGGAGATATGGT 579
Query 628 TGTCGAGCTATGATGCTTGAAACTGTAGCAGCAGTACCTGGAATGGTTGGAGGAATGTTA 687
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 580 TGTCGAGCTATGATGCTTGAGACTGTAGCAGCAGTGCCTGGAATGGTTGGAGGAATGTTA 639
Query 688 CTACACTGCAAATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAGGCTCTTCTT 747
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 640 CTACACTGCAAATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAAGCCCTTCTT 699
Query 748 GAGGAAGCAGAGAATGAGAGAATGCATCTTATGACATTCATGGAAGTCGCGAAACCGAAA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GAGGAAGCAGAGAATGAGAGAATGCATCTTATGACATTCATGGAAGTCGCGAAACCGAAA 759
Query 808 TGGTACGAGAGAGCGCTCGTGATCACTGTGCAAGGAGTCTTCTTCAACGCTTATTTCCTT 867
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 760 TGGTACGAGAGAGCGCTTGTGATCACTGTGCAAGGAGTTTTCTTCAACGCGTATTTCCTT 819
Query 868 GGTTACTTAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGGTACCTTGAAGAAGAAGCG 927
|||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 820 GGTTACCTAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATATCTTGAAGAAGAAGCA 879
Query 928 ATCCATTCTTATACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCT 987
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ATCCATTCTTACACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCT 939
Query 988 GCTCCGGCTATTGCTATTGATTACTGGAGGCTTCCTGCTGATGCGACACTTCGTGATGTT 1047
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 940 GCTCCGGCTATCGCTATTGATTACTGGAGGCTTCCTGCTGATGCAACACTCCGTGATGTT 999
Query 1048 GTGATGGTTGTTCGTGCTGACGAGGCTCATCACCGTGATGTAAACCATTTTGCATCTGAT 1107
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1000 GTGATTGTTGTTCGTGCTGACGAGGCTCATCACCGTGATGTCAACCATTTTGCATCTGAT 1059
Query 1108 ATTCACTACCAAGGTCGTGAACTAAAGGAAGCTCCAGCTCCAATTGGGTATCATTGATTC 1167
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 ATTCATTACCAAGGTCGTGAACTAAAGGAAGCTCCAGCTCCAATTGGGTATCATTGATTT 1119
Query 1168 GATTAAAAGAAGAGCTTTTTCTCAA--GTTTAAAACTTTGTTCTAAAGAATTTAAGTTCT 1225
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1120 GATTGAAAGAAGAGCTTTTTCTCAAAAGTTTAAAACTTTGTTCTAAAGAATTTGAGTTCT 1179
Query 1226 TTG-ACTTGTATATACATCATCA-C--CTCTGCTTAAGCCATACTTGGATTCGGCTTTCT 1281
|| ||||||||||||||||||| | |||| ||| ||||| |||||||||||||||||
Sbjct 1180 TTTCACTTGTATATACATCATCATCAGCTCTACTTGAGCCAAACTTGGATTCGGCTTTCG 1239
Query 1282 TTGAATGTT 1290
|||||||||
Sbjct 1240 TTGAATGTT 1248
> Ahg347138 jgi|Araly1|347138|fgenesh1_pg.C_scaffold_5000530
Length=993
Score = 767 bits (415), Expect = 0.0
Identities = 655/769 (85%), Gaps = 24/769 (3%)
Strand=Plus/Plus
Query 408 AATCGCGAGCTATTGGGGTGTTGAA-CCTAAT-AAGATTACTAAAGAAGATGGTTCTGAA 465
||||| || |||||||| | |||| || || || || || ||||||||||| |||||
Sbjct 237 AATCGTTAGTTATTGGGGCG-TGAAGCC-GATGAAAATCACCAAAGAAGATGGAACTGAA 294
Query 466 TGGAAGTGGAAC-TG-TTTCAGGCCATGGGAAACGTATAAAGCTGATATAACGATAGATC 523
||||| ||| || || |||| |||||||||| ||||||||||||||| | |||||||||
Sbjct 295 TGGAAATGG-ACTTGTTTTC-GGCCATGGGAGACGTATAAAGCTGATTTGACGATAGATT 352
Query 524 TGAAGAAGCATCATGTTCCAACGACGTTT-CTTGATAGAA-TAGCTTATTGGACT-GTTA 580
|||||||||| |||||||| | || ||| | || | || |||||||||||| | ||||
Sbjct 353 TGAAGAAGCACCATGTTCCTTCCAC-TTTACCGGACA-AATTAGCTTATTGGA-TGGTTA 409
Query 581 AATCTCTTCGTTGGCCTACCGATTTGTTCTTCCAGAGGAGATATGGATGTCGAGCTATGA 640
|||||||||| |||||||||||| | |||||||||||| | |||||||| ||||| ||||
Sbjct 410 AATCTCTTCGATGGCCTACCGATCTCTTCTTCCAGAGGCGGTATGGATGCCGAGCGATGA 469
Query 641 TGCTT-GAAACTGTAGCAGCAGTACCTGGAATGGTTGGAGGAATG-TTACTACACTGCAA 698
|| || ||||| || ||||| || || |||||||||||||| ||| ||| | |||| |||
Sbjct 470 TG-TTAGAAACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGGATGCTTA-TGCACTTCAA 527
Query 699 ATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAGGCTCTTCTTGAGGAAGCAGA 758
||||||||| ||||| || |||||||| || |||||||| || |||||||||||||||||
Sbjct 528 ATCGCTTCGGCGTTTCGAACAAAGTGGGGGTTGGATTAAAGCCCTTCTTGAGGAAGCAGA 587
Query 759 GAATGAGAGAATGCATCTTA-TGACATTCATGGAAGTCGCGAAACCGAAATGGTACGAGA 817
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 588 GAATGAGAGAATGCA-CTTAATGACATTCATGGAAGTCGCGAAACCCAAATGGTACGA-A 645
Query 818 -GAGCGCTCGTGATCACTGTGCAAGGAGTCTTCTTCAACGCTTATTTCCTTGGTTACTTA 876
|||| || |||||| | || ||||| || ||||||||||||||||| || || ||||||
Sbjct 646 CGAGCTCTTGTGATCGCCGTTCAAGGCGTTTTCTTCAACGCTTATTTACTCGGATACTTA 705
Query 877 ATCTCTCCCAAGTTTGCTCATCGTATGGTTGGGTACCTTGAAGAAGAAGCGATCCATTCT 936
||||| ||||| |||||||||||||||||||| |||||||| |||||||| || ||||||
Sbjct 706 ATCTCCCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCT 765
Query 937 TATACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCTGCTCCGGCT 996
|| || || |||||||| |||||||| || ||||||||||| || |||||||| ||||||
Sbjct 766 TACACCGAATTTCTCAAAGAACTTGATAATGGTAACATTGAAAACGTTCCTGCACCGGCT 825
Query 997 ATTGCTATTGATTACTGGAGGCTTCCTGCTGATGCGACACTTCGTGATGTTGTGATGGTT 1056
|||||||||||||||||||||||| ||||| || || ||||||||||| || |||||
Sbjct 826 ATTGCTATTGATTACTGGAGGCTTGAAGCTGACGCAACGCTTCGTGATGTCGTCATGGTG 885
Query 1057 GTTCGTGCTGACGAGGCTCATCACCGTGATGTAAACCATTTTGCATCTGATATTCACTAC 1116
||||||||||| ||||| |||||||||||||| ||||| | |||||| ||||||||||||
Sbjct 886 GTTCGTGCTGATGAGGCCCATCACCGTGATGTTAACCACTATGCATCCGATATTCACTAC 945
Query 1117 CAAGGTCGTGAACT-AAAGGAAGCTCCAGCTCCAATTGGGTATCATTGA 1164
||||||| ||| || |||| ||||||||||||| || || |||||||||
Sbjct 946 CAAGGTCATGAGCTGAAAG-AAGCTCCAGCTCCCATAGGATATCATTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5