BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G22425.2
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2 1428 0.0
Ahg946852 jgi|Araly1|946852|scaffold_703081.1 678 0.0
> Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2
Length=1050
Score = 1428 bits (773), Expect = 0.0
Identities = 957/1043 (92%), Gaps = 23/1043 (2%)
Strand=Plus/Plus
Query 11 AGGAGAATCAAAGCGTCGTC--TCTTGTTCCTTCCGCTGCCAACAAAATGGAGCTGTCGT 68
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 AGGAGAATCAAAGCGTCGTCAGTCTTCTTCCTTCCGCTGCCAACAAAATGGAGCTGTCGT 60
Query 69 CTGCGTCCGCCATATTAAGCCACTCCTCCTCCGCCGCTCAGCTTCTCAGACCTAAGCTCG 128
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGCATCCGCCATATTTGGCCACTCCTCCTCCGCCGCTCAGCTTCTCAGACCTAAGCTCG 120
Query 129 GGTTTATTGATTTGCTTCCTCGTCGAGCGATGATCGTTTCTTCTCCTTCTTCTTCGCTTC 188
||||||| ||||| |||||||||||||| || ||||| || | | || |||| | |||
Sbjct 121 GGTTTATAGATTTACTTCCTCGTCGAGCAATAATCGTGTC-T-T-CTGCTTC-T--ATTC 174
Query 189 CTCGATTTTTGCGGATGGAATCTCAATCTCAGC-TTCGCCAATC-TAtctcttgct-ctg 245
|||||||||||||||||||||||||||||| | || || | | |||| ||| ||
Sbjct 175 CTCGATTTTTGCGGATGGAATCTCAATCTC-CCATT--AAAAACGTTTCTCAGGCTACTT 231
Query 246 cttcttcttcttcttctATGGCATTAGGTAGAATTGGAGAAGTAAAGAGAGTAACAAAGG 305
|| |||||||||| ||||| | ||||| | ||||||||||||||||||||||||||||||
Sbjct 232 CTGCTTCTTCTTCCTCTATCGAATTAGCTCGAATTGGAGAAGTAAAGAGAGTAACAAAGG 291
Query 306 AAACGAATGTTTCAGTGAAGATTAATTTGGATGGTACTGGAGTTGCAGATAGTTCTAGTG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 292 AAACGAATGTTTCAGTGAAGATTAATTTGGATGGTACTGGAGTTGCAGATAGTTCTACTG 351
Query 366 GAATTCCTTTCCTTGACCATATGTTAGATCAACTTGCTTCGCATGGCTTGTTTGATGTGC 425
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 352 GAATTCCTTTTCTTGACCATATGTTAGATCAACTTGCTTCACATGGCTTGTTTGATGTGC 411
Query 426 ACGTTAGAGCTACTGGTGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACGTTAGAGCTACTGGTGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTC 471
Query 486 TTGCCATTGGAACTGCTCTATTAAAGGCTCTTGGTGAGCGTAAAGGGATTAACCGGTTTG 545
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 472 TTGCCATTGGAACAGCTCTTTTAAAGGCCCTTGGTGAGCGTAAAGGGATTAACCGGTTTG 531
Query 546 GTGACTTCACAGCTCCTCTAGATGAAGCGCTTATACATGTTTCCTTGGACTTGTCTGGTC 605
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTGACTTCACAGCTCCTTTAGATGAAGCGCTTATACATGTTTCCTTGGACTTGTCTGGTC 591
Query 606 GACCATATCTTGGTTACAACTTGGAGATACCAACTCAGAGAGTTGGAACATATGATACTC 665
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 592 GACCATATCTTGGTTACAACTTGGAGATTCCAACCCAGAGAGTTGGAACTTATGACACTC 651
Query 666 AGTTGGTGGAGCACTTTTTCCAGTCGTTGGTGAATACTTCTGGTATGACTCTTCACATCC 725
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 652 AGTTGGTGGAGCACTTCTTCCAGTCGTTGGTGAATACTTCTGGTATGACACTTCACATCC 711
Query 726 GGCAGCTCGCTGGTGAAAACTCTCATCACATAATAGAGGCGACGTTTAAGGCGTTTGCCA 785
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 712 GGCAGCTTGCTGGTGAAAACTCTCATCACATAATAGAGGCGACCTTTAAGGCCTTTGCCA 771
Query 786 GAGCTCTACGACAAGCAACAGAG-ACTGATCCACGCCGTGGTGGGACAATACCAAGTTCA 844
| ||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct 772 GGGCTCTACGACAAGCAACAGAGGA-TGATCCACGTCGTGGTGGGACGATACCAAGTTCA 830
Query 845 AAAGGAGTCTTATCACGGTCTTGAAAGCTAATCAAACACACAAGACAGTTCCCAGATTCA 904
||||||||||| ||||| |||||| |||| | |||||||||||||||||||||| |||||
Sbjct 831 AAAGGAGTCTTGTCACGATCTTGAGAGCTCAGCAAACACACAAGACAGTTCCCAAATTCA 890
Query 905 CACTTCATCGTCGAGTTCATGAGCCATCGTCAATTCTCTTATGGTACCAAATGCCAAGCC 964
|||||||| ||||||||| ||| |||||||| ||| ||||||| | ||||||||||||||
Sbjct 891 CACTTCATTGTCGAGTTCCTGAACCATCGTCGATTTTCTTATGTTGCCAAATGCCAAGCC 950
Query 965 TGTTGGATCTTGCTGTTCCATTCCATTACAGAAGCACAAAGAGCAAAATGTGAAAATAGA 1024
||||||||||| ||||| | || | ||||| | ||||||||||||||||||||||||
Sbjct 951 TGTTGGATCTTACTGTTAC-TT---TG-CAGAATCGCAAAGAGCAAAATGTGAAAATAGA 1005
Query 1025 TTAGA-GATCACACAGTTCAGAA 1046
| || |||||||||||||||||
Sbjct 1006 GT-GAAGATCACACAGTTCAGAA 1027
> Ahg946852 jgi|Araly1|946852|scaffold_703081.1
Length=859
Score = 678 bits (367), Expect = 0.0
Identities = 517/591 (87%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 276 GAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTGAAGATTAATTTGG 335
|||| || ||||| ||||||| |||||||||||| ||||| ||||||||| |||||||||
Sbjct 247 GAATAGGTGAAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGCTTAATTTGG 306
Query 336 ATGGTACTGGAGTTGCAGATAGTTCTAGTGGAATTCCTTTCCTTGACCATATGTTAGATC 395
|||||| ||||||| ||||||| || | ||| ||| |||||||||| |||||||||||||
Sbjct 307 ATGGTAATGGAGTTTCAGATAGCTCCACTGGGATTGCTTTCCTTGATCATATGTTAGATC 366
Query 396 AACTTGCTTCGCATGGCTTGTTTGATGTGCACGTTAGAGCTACTGGTGATGTTCACATTG 455
|||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| |||| ||||
Sbjct 367 AACTTGCTTCACATGGATTGTTCGATGTACACGTAAGAGCTACTGGTGATATTCATATTG 426
Query 456 ATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACTGCTCTATTAAAGGCTC 515
|||||||||| || ||||||||| | || |||||||||||||| ||| | || ||||| |
Sbjct 427 ATGATCATCATACGAATGAAGATGTTGCGCTTGCCATTGGAACAGCTTTGTTGAAGGCAC 486
Query 516 TTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTCCTCTAGATGAAGCGC 575
|||| ||||| |||||||||||||| ||||| || || ||||||||||| |||||||| |
Sbjct 487 TTGGGGAGCGGAAAGGGATTAACCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCAC 546
Query 576 TTATACATGTTTCCTTGGACT-TGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATA 634
|||||||||||||| |||| | | ||||||||||| |||||||| ||||| || |||||
Sbjct 547 TTATACATGTTTCCCTGGA-TCTATCTGGTCGACCGTATCTTGGCTACAATTTAGAGATT 605
Query 635 CCAACTCAGAGAGTTGGAACATATGATACTCAGTTGGTGGAGCACTTT-TTCCAGTCGTT 693
||||| |||||||| |||||||| || ||||||||||||||||| ||| |||||||| ||
Sbjct 606 CCAACCCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAGCA-TTTCTTCCAGTCATT 664
Query 694 GGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGCTCGCTGGTGAAAACTCTCATCA 753
|||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 665 AGTGAATACTTCTGGTATGACACTTCACATCCGACAGCTTGCTGGTAAAAACTCTCATCA 724
Query 754 CATAATAGAGGCGACGTTTAAGGCGTTTGCCAGAGCTCTACGACAAGCAACAGAGACTGA 813
|| ||||| ||||| |||||||| ||||| || ||||| ||||||||||||||| ||||
Sbjct 725 TATTATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTGA 784
Query 814 TCCACGCCGTGGTGGGACAATACCAAGTTCAAAAGGAGTCTTATCACGGTC 864
|||||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct 785 TCCACGTCGCGGTGGGACAATACCAAGTTCAAAAGGAGTCTTGTCGCGGTC 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5